<<include /software/circos/0.69-9/circos-0.69-9/etc/colors_fonts_patterns.conf>>

<<include /software/circos/0.69-9/circos-0.69-9/etc/housekeeping.conf>>

<<include hg19.ideogram.conf>>
<<include hg19.ticks.conf>>

<image>
<<include /software/circos/0.69-9/circos-0.69-9/etc/image.conf>>
</image>

# karyotype   = /oak/stanford/groups/akundaje/marinovg/AncientHumans/2023-01-16-clustering/hg38.karyotype
karyotype   = karyotype.human.hg38-chr.txt

chromosomes_units           = 1000000
chromosomes_display_default = yes
chromosomes                 = chr1;chr2;chr3;chr4;chr5;chr6;chr7;chr8;chr9;chr10;chr11;chr12;chr13;chr14;chr15;chr16;chr17;chr18;chr19;chr20;chr21;chr22;chrX;chrY;chrM

<plots>


<plot>
type  = heatmap
file  = logcounts_single_clustering_format.5000bp_ext.max
r1    = 0.97r
r0    = 0.87r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.6
max = 0.6
color_mapping = 2
</plot>

<plot>
type  = heatmap
file  = logcounts_single_clustering_format.5000bp_ext.max.0.6.chr-hist.log2FC_per_chr_size
r1    = 0.84r
r0    = 0.64r
stroke_thickness = 0
color = spectral-9-div-rev
min = -1.5
max = 1.5
color_mapping = 2
</plot>

<plot>
type  = heatmap
file  = logcounts_single_clustering_format.5000bp_ext.max.0.6.chr-hist.log2FC_per_variants
r1    = 0.63r
r0    = 0.43r
stroke_thickness = 0
color = spectral-9-div-rev
min = -1.5
max = 1.5
color_mapping = 2
</plot>


</plots>

