<<include /software/circos/0.69-9/circos-0.69-9/etc/colors_fonts_patterns.conf>>

<<include /software/circos/0.69-9/circos-0.69-9/etc/housekeeping.conf>>

<<include hg19.ideogram.conf>>
<<include hg19.ticks.conf>>

<image>
<<include /software/circos/0.69-9/circos-0.69-9/etc/image.conf>>
</image>

# karyotype   = /oak/stanford/groups/akundaje/marinovg/AncientHumans/2023-01-16-clustering/hg38.karyotype
karyotype   = karyotype.human.hg38-chr.txt

chromosomes_units           = 1000000
chromosomes_display_default = yes
# chromosomes                 = chr1;chr2;chr3;chr4;chr5;chr6;chr7;chr8;chr9;chr10;chr11;chr12;chr13;chr14;chr15;chr16;chr17;chr18;chr19;chr20;chr21;chr22;chrX;chrY;chrM
chromosomes                 = chr1;chr2;chr3

<plots>

<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.3
r1    = 0.92r
r0    = 0.90r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.4
r1    = 0.90r
r0    = 0.88r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.5
r1    = 0.88r
r0    = 0.86r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.6
r1    = 0.86r
r0    = 0.84r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.7
r1    = 0.84r
r0    = 0.82r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.8
r1    = 0.82r
r0    = 0.80r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.9
r1    = 0.80r
r0    = 0.78r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.10
r1    = 0.78r
r0    = 0.76r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>





</plots>

