<<include /software/circos/0.69-9/circos-0.69-9/etc/colors_fonts_patterns.conf>>

<<include /software/circos/0.69-9/circos-0.69-9/etc/housekeeping.conf>>

<<include hg19.ideogram.conf>>
<<include hg19.ticks.conf>>

<image>
<<include /software/circos/0.69-9/circos-0.69-9/etc/image.conf>>
</image>

# karyotype   = /oak/stanford/groups/akundaje/marinovg/AncientHumans/2023-01-16-clustering/hg38.karyotype
karyotype   = karyotype.human.hg38-chr.txt

chromosomes_units           = 1000000
chromosomes_display_default = yes
# chromosomes                 = chr1;chr2;chr3;chr4;chr5;chr6;chr7;chr8;chr9;chr10;chr11;chr12;chr13;chr14;chr15;chr16;chr17;chr18;chr19;chr20;chr21;chr22;chrX;chrY;chrM
chromosomes                 = chr1;chr2;chr3

<plots>

<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.3
r1    = 0.93r
r0    = 0.929528443114r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.4
r1    = 0.929528443114r
r0    = 0.929056886228r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.5
r1    = 0.929056886228r
r0    = 0.928585329341r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.6
r1    = 0.928585329341r
r0    = 0.928113772455r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.7
r1    = 0.928113772455r
r0    = 0.927642215569r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.8
r1    = 0.927642215569r
r0    = 0.927170658683r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.9
r1    = 0.927170658683r
r0    = 0.926699101796r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.10
r1    = 0.926699101796r
r0    = 0.92622754491r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.11
r1    = 0.92622754491r
r0    = 0.925755988024r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.12
r1    = 0.925755988024r
r0    = 0.925284431138r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.13
r1    = 0.925284431138r
r0    = 0.924812874251r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.14
r1    = 0.924812874251r
r0    = 0.924341317365r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.15
r1    = 0.924341317365r
r0    = 0.923869760479r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.16
r1    = 0.923869760479r
r0    = 0.923398203593r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.17
r1    = 0.923398203593r
r0    = 0.922926646707r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.18
r1    = 0.922926646707r
r0    = 0.92245508982r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.19
r1    = 0.92245508982r
r0    = 0.921983532934r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.20
r1    = 0.921983532934r
r0    = 0.921511976048r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.21
r1    = 0.921511976048r
r0    = 0.921040419162r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.22
r1    = 0.921040419162r
r0    = 0.920568862275r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.23
r1    = 0.920568862275r
r0    = 0.920097305389r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.24
r1    = 0.920097305389r
r0    = 0.919625748503r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.25
r1    = 0.919625748503r
r0    = 0.919154191617r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.26
r1    = 0.919154191617r
r0    = 0.918682634731r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.27
r1    = 0.918682634731r
r0    = 0.918211077844r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.28
r1    = 0.918211077844r
r0    = 0.917739520958r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.29
r1    = 0.917739520958r
r0    = 0.917267964072r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.30
r1    = 0.917267964072r
r0    = 0.916796407186r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.31
r1    = 0.916796407186r
r0    = 0.916324850299r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.32
r1    = 0.916324850299r
r0    = 0.915853293413r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.33
r1    = 0.915853293413r
r0    = 0.915381736527r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.34
r1    = 0.915381736527r
r0    = 0.914910179641r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.35
r1    = 0.914910179641r
r0    = 0.914438622754r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.36
r1    = 0.914438622754r
r0    = 0.913967065868r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.37
r1    = 0.913967065868r
r0    = 0.913495508982r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.38
r1    = 0.913495508982r
r0    = 0.913023952096r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.39
r1    = 0.913023952096r
r0    = 0.91255239521r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.40
r1    = 0.91255239521r
r0    = 0.912080838323r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.41
r1    = 0.912080838323r
r0    = 0.911609281437r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.42
r1    = 0.911609281437r
r0    = 0.911137724551r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.43
r1    = 0.911137724551r
r0    = 0.910666167665r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.44
r1    = 0.910666167665r
r0    = 0.910194610778r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.45
r1    = 0.910194610778r
r0    = 0.909723053892r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.46
r1    = 0.909723053892r
r0    = 0.909251497006r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.47
r1    = 0.909251497006r
r0    = 0.90877994012r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.48
r1    = 0.90877994012r
r0    = 0.908308383234r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.49
r1    = 0.908308383234r
r0    = 0.907836826347r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.50
r1    = 0.907836826347r
r0    = 0.907365269461r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.51
r1    = 0.907365269461r
r0    = 0.906893712575r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.52
r1    = 0.906893712575r
r0    = 0.906422155689r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.53
r1    = 0.906422155689r
r0    = 0.905950598802r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.54
r1    = 0.905950598802r
r0    = 0.905479041916r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.55
r1    = 0.905479041916r
r0    = 0.90500748503r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.56
r1    = 0.90500748503r
r0    = 0.904535928144r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.57
r1    = 0.904535928144r
r0    = 0.904064371257r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.58
r1    = 0.904064371257r
r0    = 0.903592814371r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.59
r1    = 0.903592814371r
r0    = 0.903121257485r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


<plot>
type  = heatmap
file  = lcounts_ungrouped_no_blacklist.5000bp_ext.60
r1    = 0.903121257485r
r0    = 0.902649700599r
stroke_thickness = 0
color = spectral-9-div-rev
min = -0.2
max = 0.2
color_mapping = 2
</plot>


</plots>

