File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF185DEL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF185DEL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF185DEL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF185DEL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF185DEL.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF652POL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF652POL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF652POL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF652POL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF652POL.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.463M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.463M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.463M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.463M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.463M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.463M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.463M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF185DEL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF185DEL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF185DEL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF185DEL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF185DEL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF185DEL.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF652POL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF652POL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF652POL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF652POL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF652POL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF652POL.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF185DEL.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.463M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.463M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 1178505710390318867 chip.macs2_signal_track_pooled 1671290597095929583 BW FC 1178505710390318867->1671290597095929583 -871653265940485178 BW p-val 1178505710390318867->-871653265940485178 -4991469473599914983 chip.call_peak_pooled 6410883890464669939 Peak (bfilt) -4991469473599914983->6410883890464669939 4245607430960492311 Peak -4991469473599914983->4245607430960492311 4791558115228964282 chip.idr_ppr 4245607430960492311->4791558115228964282 4385879143813914500 chip.idr 4245607430960492311->4385879143813914500 7857643952468151929 chip.overlap 4245607430960492311->7857643952468151929 -7144076020389842331 chip.overlap_ppr 4245607430960492311->-7144076020389842331 -4822065302729616286 chip.pool_ta 9157832774770428175 TAG-ALIGN -4822065302729616286->9157832774770428175 9157832774770428175->1178505710390318867 9157832774770428175->-4991469473599914983 9157832774770428175->4791558115228964282 9157832774770428175->4385879143813914500 9157832774770428175->7857643952468151929 9157832774770428175->-7144076020389842331 6828678465750396407 chip.call_peak 1730227376872121644 Peak (bfilt) 6828678465750396407->1730227376872121644 -7878598682777717178 Peak 6828678465750396407->-7878598682777717178 -7878598682777717178->4385879143813914500 -7878598682777717178->7857643952468151929 -4473385551792320185 chip.reproducibility_overlap -7878598682777717178->-4473385551792320185 9144423307535195360 chip.reproducibility_idr -7878598682777717178->9144423307535195360 -6291260105590657382 chip.bam2ta -7530479822605983 TAG-ALIGN -6291260105590657382->-7530479822605983 -7530479822605983->-4822065302729616286 -7530479822605983->6828678465750396407 -2457845724451107441 chip.macs2_signal_track -7530479822605983->-2457845724451107441 -7530479822605983->4791558115228964282 -7530479822605983->-4473385551792320185 -7530479822605983->9144423307535195360 -7530479822605983->-7144076020389842331 1511627177794994293 chip.filter -7969865112940027268 SAMstats QC 1511627177794994293->-7969865112940027268 3142588409875009501 Filt/deduped BAM 1511627177794994293->3142588409875009501 -5546532646853635675 LibCmplx QC 1511627177794994293->-5546532646853635675 3142588409875009501->-6291260105590657382 7612333714258170718 chip.jsd 3142588409875009501->7612333714258170718 2439143392987232650 chip.align 4274001136518377018 SAMstats QC 2439143392987232650->4274001136518377018 -7818273135721906138 BAM 2439143392987232650->-7818273135721906138 -7818273135721906138->1511627177794994293 -168523280704600186 chip.xcor 1971439590571889016 XCOR Plot -168523280704600186->1971439590571889016 -4981292158187969758 BW FC -2457845724451107441->-4981292158187969758 6806915525177146337 BW p-val -2457845724451107441->6806915525177146337 3559137732213373436 FASTQ R1 (1) 3559137732213373436->2439143392987232650 3559137732213373436->-168523280704600186 -6815125288282898592 FASTQ R2 (1) -6815125288282898592->2439143392987232650 -282811856494619296 chip.call_peak -556757356874364506 Peak (bfilt) -282811856494619296->-556757356874364506 -7286785631592564104 Peak -282811856494619296->-7286785631592564104 -7286785631592564104->4385879143813914500 -7286785631592564104->7857643952468151929 -7286785631592564104->-4473385551792320185 -7286785631592564104->9144423307535195360 3651586866856683290 chip.bam2ta 6829519572168068416 TAG-ALIGN 3651586866856683290->6829519572168068416 6829519572168068416->-4822065302729616286 6829519572168068416->-282811856494619296 -7227789201128974164 chip.macs2_signal_track 6829519572168068416->-7227789201128974164 6829519572168068416->4791558115228964282 6829519572168068416->-4473385551792320185 6829519572168068416->9144423307535195360 6829519572168068416->-7144076020389842331 5917322118148397062 chip.filter -7071478663308478814 SAMstats QC 5917322118148397062->-7071478663308478814 -7313806997953599327 Filt/deduped BAM 5917322118148397062->-7313806997953599327 -6609981756743016183 LibCmplx QC 5917322118148397062->-6609981756743016183 -7313806997953599327->3651586866856683290 -7313806997953599327->7612333714258170718 -7135078993387543658 chip.align 388940382886822058 SAMstats QC -7135078993387543658->388940382886822058 8101672202043725126 BAM -7135078993387543658->8101672202043725126 8101672202043725126->5917322118148397062 1312036061409261795 chip.xcor 905373549155570413 XCOR Plot 1312036061409261795->905373549155570413 1537680299615592860 BW FC -7227789201128974164->1537680299615592860 7772644330124561483 BW p-val -7227789201128974164->7772644330124561483 -2081290313748542134 FASTQ R1 (1) -2081290313748542134->-7135078993387543658 -2081290313748542134->1312036061409261795 -2639182565661839908 FASTQ R2 (1) -2639182565661839908->-7135078993387543658 -3272831855349869233 chip.pool_ta_ctl 6492404824066487731 TAG-ALIGN -3272831855349869233->6492404824066487731 6492404824066487731->1178505710390318867 6492404824066487731->-4991469473599914983 6492404824066487731->6828678465750396407 6492404824066487731->-2457845724451107441 6492404824066487731->-282811856494619296 6492404824066487731->-7227789201128974164 6492404824066487731->4791558115228964282 6492404824066487731->-4473385551792320185 6492404824066487731->9144423307535195360 6492404824066487731->-7144076020389842331 -3679049102410479132 chip.bam2ta_ctl 3017857176068249767 TAG-ALIGN -3679049102410479132->3017857176068249767 3017857176068249767->-3272831855349869233 3407337033430907093 Filt/deduped BAM 3407337033430907093->-3679049102410479132 3407337033430907093->7612333714258170718 -5440525598909405939 chip.bam2ta_ctl -4682778343956684311 TAG-ALIGN -5440525598909405939->-4682778343956684311 -4682778343956684311->-3272831855349869233 -4570940071389589855 Filt/deduped BAM -4570940071389589855->-5440525598909405939 -4570940071389589855->7612333714258170718 -8705492123641401517 chip.bam2ta_ctl 2388825755613020613 TAG-ALIGN -8705492123641401517->2388825755613020613 2388825755613020613->-3272831855349869233 6596340767098928050 Filt/deduped BAM 6596340767098928050->-8705492123641401517 6596340767098928050->7612333714258170718 -2262152278939687881 chip.bam2ta_ctl 3057894360335963465 TAG-ALIGN -2262152278939687881->3057894360335963465 3057894360335963465->-3272831855349869233 -3166489891882799423 Filt/deduped BAM -3166489891882799423->-2262152278939687881 -3166489891882799423->7612333714258170718 -7422644301655454659 chip.bam2ta_ctl -5297905232356270843 TAG-ALIGN -7422644301655454659->-5297905232356270843 -5297905232356270843->-3272831855349869233 -1220625455808474838 Filt/deduped BAM -1220625455808474838->-7422644301655454659 -1220625455808474838->7612333714258170718 4312214420660992018 chip.bam2ta_ctl -8747980261901012174 TAG-ALIGN 4312214420660992018->-8747980261901012174 -8747980261901012174->-3272831855349869233 -168234951780213161 Filt/deduped BAM -168234951780213161->4312214420660992018 -168234951780213161->7612333714258170718 -6529873341224075806 chip.bam2ta_ctl -8985060237200188854 TAG-ALIGN -6529873341224075806->-8985060237200188854 -8985060237200188854->-3272831855349869233 6921485330418902610 Filt/deduped BAM 6921485330418902610->-6529873341224075806 6921485330418902610->7612333714258170718 -5266877574447630281 chip.bam2ta_ctl 5003197052304260416 TAG-ALIGN -5266877574447630281->5003197052304260416 5003197052304260416->-3272831855349869233 -3383215787117863258 Filt/deduped BAM -3383215787117863258->-5266877574447630281 -3383215787117863258->7612333714258170718 2272789959236469434 chip.bam2ta_ctl 3138724081287182917 TAG-ALIGN 2272789959236469434->3138724081287182917 3138724081287182917->-3272831855349869233 -3296182850382652219 Filt/deduped BAM -3296182850382652219->2272789959236469434 -3296182850382652219->7612333714258170718 -2232068844037669394 chip.bam2ta_ctl 1041238510300004623 TAG-ALIGN -2232068844037669394->1041238510300004623 1041238510300004623->-3272831855349869233 5970381802612254444 Filt/deduped BAM 5970381802612254444->-2232068844037669394 5970381802612254444->7612333714258170718 -3655606329806561180 chip.bam2ta_ctl 4398310860321102929 TAG-ALIGN -3655606329806561180->4398310860321102929 4398310860321102929->-3272831855349869233 8193394607620155569 Filt/deduped BAM 8193394607620155569->-3655606329806561180 8193394607620155569->7612333714258170718 5989016554664155057 chip.bam2ta_ctl -2307967140779198308 TAG-ALIGN 5989016554664155057->-2307967140779198308 -2307967140779198308->-3272831855349869233 5451978172280102348 Filt/deduped BAM 5451978172280102348->5989016554664155057 5451978172280102348->7612333714258170718 -4727277738437315723 chip.bam2ta_ctl -9031595318401722243 TAG-ALIGN -4727277738437315723->-9031595318401722243 -9031595318401722243->-3272831855349869233 -5123766357222142622 Filt/deduped BAM -5123766357222142622->-4727277738437315723 -5123766357222142622->7612333714258170718 2684422247441355575 chip.bam2ta_ctl 4327677441368808460 TAG-ALIGN 2684422247441355575->4327677441368808460 4327677441368808460->-3272831855349869233 -5965599094716379692 Filt/deduped BAM -5965599094716379692->2684422247441355575 -5965599094716379692->7612333714258170718 -5655857349612892001 chip.bam2ta_ctl 2579135692557024354 TAG-ALIGN -5655857349612892001->2579135692557024354 2579135692557024354->-3272831855349869233 3208971115027418387 Filt/deduped BAM 3208971115027418387->-5655857349612892001 3208971115027418387->7612333714258170718 -1338842831577831683 chip.bam2ta_ctl -7701077970674944267 TAG-ALIGN -1338842831577831683->-7701077970674944267 -7701077970674944267->-3272831855349869233 -8090651466416813477 Filt/deduped BAM -8090651466416813477->-1338842831577831683 -8090651466416813477->7612333714258170718 -2083805097432404000 chip.bam2ta_ctl -737840506759247519 TAG-ALIGN -2083805097432404000->-737840506759247519 -737840506759247519->-3272831855349869233 -4056576332255741977 Filt/deduped BAM -4056576332255741977->-2083805097432404000 -4056576332255741977->7612333714258170718 -7798627598896733601 chip.bam2ta_ctl -5015303802797431093 TAG-ALIGN -7798627598896733601->-5015303802797431093 -5015303802797431093->-3272831855349869233 8349717632099153289 Filt/deduped BAM 8349717632099153289->-7798627598896733601 8349717632099153289->7612333714258170718 6453257656016389516 chip.bam2ta_ctl -2422802766608111747 TAG-ALIGN 6453257656016389516->-2422802766608111747 -2422802766608111747->-3272831855349869233 -4041085117696474803 Filt/deduped BAM -4041085117696474803->6453257656016389516 -4041085117696474803->7612333714258170718 7335549732699586206 chip.bam2ta_ctl 6391044644627942350 TAG-ALIGN 7335549732699586206->6391044644627942350 6391044644627942350->-3272831855349869233 -2219110494292892311 Filt/deduped BAM -2219110494292892311->7335549732699586206 -2219110494292892311->7612333714258170718 -9017652065924118864 chip.bam2ta_ctl 6088904352311258322 TAG-ALIGN -9017652065924118864->6088904352311258322 6088904352311258322->-3272831855349869233 -6351398054665320378 Filt/deduped BAM -6351398054665320378->-9017652065924118864 -6351398054665320378->7612333714258170718 7163192690241818216 chip.bam2ta_ctl 5581496232319176376 TAG-ALIGN 7163192690241818216->5581496232319176376 5581496232319176376->-3272831855349869233 2031093566164383635 Filt/deduped BAM 2031093566164383635->7163192690241818216 2031093566164383635->7612333714258170718 8490049378825501279 chip.bam2ta_ctl -6586808912416581178 TAG-ALIGN 8490049378825501279->-6586808912416581178 -6586808912416581178->-3272831855349869233 -6984857494088268681 Filt/deduped BAM -6984857494088268681->8490049378825501279 -6984857494088268681->7612333714258170718 1797776808814543263 chip.bam2ta_ctl -2189028192884816897 TAG-ALIGN 1797776808814543263->-2189028192884816897 -2189028192884816897->-3272831855349869233 6823067497803797427 Filt/deduped BAM 6823067497803797427->1797776808814543263 6823067497803797427->7612333714258170718 8163144883993144824 IDR Plot ppr 4791558115228964282->8163144883993144824 -2617127408920439547 IDR Peak ppr 4791558115228964282->-2617127408920439547 -2617127408920439547->9144423307535195360 2724560489236340068 IDR Plot rep1_vs_rep2 4385879143813914500->2724560489236340068 5707091009137695164 IDR NPeak rep1_vs_rep2 4385879143813914500->5707091009137695164 5707091009137695164->9144423307535195360 5566696005757230980 Overlap Peak rep1_vs_rep2 7857643952468151929->5566696005757230980 5566696005757230980->-4473385551792320185 -3611188986862346866 Overlap Peak optimal -4473385551792320185->-3611188986862346866 -3434623769386830753 Overlap reproducibility -4473385551792320185->-3434623769386830753 -845187013314652056 IDR Peak optimal 9144423307535195360->-845187013314652056 -8816800344527379918 IDR reproducibility 9144423307535195360->-8816800344527379918 3465178449856572132 Overlap Peak ppr -7144076020389842331->3465178449856572132 3465178449856572132->-4473385551792320185 -5006759531508701038 JSD Plot 7612333714258170718->-5006759531508701038

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.fc.signal.bigwig?Expires=1601339922&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=ltyWS6nsG37NGIizZhC2ZxEw3%2BHvWiKIQH9vVO8nWgIVBenMDosLnAfsbKzdclWqUnXalvYLn8AOBPJL%2BtQ7mc3Fs8p5iViUugyk6rWIeU1SS4KhwKQRcCvJ3yOUak8SkzL7XIz1Rx71ac0HJEw0AiwIGWwQ%2FNacf%2F736a9Cabi8Yq5ix%2Brl3v9ygnMAu3TfwKVIdV17Uhj72BTdu82XRTxoYGcIU5leVSISP1ueGVSV2vR32mGrCobbewz1G2sjxL2bGn%2BY6MtBDig9EdbMTyzfWbjqrThe5pcv7Lud7v6Kbkqa%2FhkxH0p86wOmbEBpbUV7yXd%2BOhYz%2FtHjiqZiQw%3D%3D"
track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.fc.signal.bigwig?Expires=1601339922&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=6akpgPn4T2%2F%2BH%2B5tKGjYkE4PlmZTgXnM5gQCMF%2BKQiwWNUvh5KgYpHqE7bmzMvb0%2Bz0tN4%2FEVrCsEDla0iLOPMS%2FMEZdLWTBAyVfn96ae8dO6D2acBjq3n2RkuvCYLdCvNAMoJxWf03r%2BJ2gI0yrJ3ToKKIAHeHVq8IzHZnxXFvqJc3dulo8eqp76saCUa4%2F8jrsUxryZ7ActveVsqbvotFxO0S9Xv9vYiojxtgW1G1j21NEEwHmyKObL75esJJHAQbaygXpYuJ27mXkrQ2xYKr389mLO537KTZR%2BInJgPn2SfY5dZ27qjvB4YBWLjYlBnUeDcDTb1pJmCo7bQZdiA%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.463M.pval.signal.bigwig?Expires=1601339922&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=i2pVqGdAD7mKBd3LO%2BMQJ58C%2BchM5seWRgQVymrO1h44wYqT4F%2FE3EqporKR%2BxhIGmev04FOII%2B2btMS29uk2TIumfcozYhq88nGuh61jKCg%2BRSlvvPkNAR7HutflBlGt%2BizGYH8PejnsfU%2BgCGIK1kAkR19AWvgKDkcU5H%2Bz%2BuIXjA%2BnRWYNuQ8Pc0f%2Fjje1tw2BJZrvmkWx7ziS9D9t6vtPcI7BynRcqe5mc74Wz7RRQuacq4%2BahbnIDi%2BqAIunMseoY25IArpPz4xkiqyzeMSGSLB8ySSrCPo%2BuOppArXCc6P%2Bw%2FnEmiUaX%2FGQLOUgugDhFIA2fXr1qupLel%2Fdw%3D%3D"
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