File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF185DEL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF185DEL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF185DEL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF185DEL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF185DEL.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF652POL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF652POL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF652POL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF652POL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF652POL.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.463M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.463M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.463M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.463M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185DEL.crop_101-2bp.nodup.pr1_x_ctl.pooled.252M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185DEL.crop_101-2bp.nodup.pr2_x_ctl.pooled.252M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF185DEL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF185DEL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF185DEL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF185DEL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF185DEL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF185DEL.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF652POL.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF652POL.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF652POL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF652POL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF652POL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF652POL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF652POL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF652POL.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a5fe07fa-97a9-4611-b746-4e762c5fb97d/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF185DEL.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/99234283-dd0c-4592-9912-9e1e388ef8b1/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.463M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.463M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF185DEL.crop_101-2bp.nodup_x_ctl.pooled.252M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF652POL.crop_101-2bp.nodup_x_ctl.pooled.210M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -4318738156923493528 chip.macs2_signal_track_pooled 102396511438269064 BW FC -4318738156923493528->102396511438269064 1141172184421577454 BW p-val -4318738156923493528->1141172184421577454 -7479586090380971012 chip.call_peak_pooled -1237428459522398616 Peak (bfilt) -7479586090380971012->-1237428459522398616 -5355960993737375416 Peak -7479586090380971012->-5355960993737375416 -6753757229107726449 chip.idr_ppr -5355960993737375416->-6753757229107726449 34801863822899812 chip.idr -5355960993737375416->34801863822899812 3023839565603855677 chip.overlap -5355960993737375416->3023839565603855677 -8290754094739098810 chip.overlap_ppr -5355960993737375416->-8290754094739098810 -6294312049438464853 chip.pool_ta -4156516973542617448 TAG-ALIGN -6294312049438464853->-4156516973542617448 -4156516973542617448->-4318738156923493528 -4156516973542617448->-7479586090380971012 -4156516973542617448->-6753757229107726449 -4156516973542617448->34801863822899812 -4156516973542617448->3023839565603855677 -4156516973542617448->-8290754094739098810 7929250182810549625 chip.call_peak 3139761896094853421 Peak (bfilt) 7929250182810549625->3139761896094853421 -7335653905500493684 Peak 7929250182810549625->-7335653905500493684 -7335653905500493684->34801863822899812 -7335653905500493684->3023839565603855677 -4262601568769870390 chip.reproducibility_overlap -7335653905500493684->-4262601568769870390 -4662305966674381935 chip.reproducibility_idr -7335653905500493684->-4662305966674381935 -3249107960196740271 chip.bam2ta 1177763200985494846 TAG-ALIGN -3249107960196740271->1177763200985494846 1177763200985494846->-6294312049438464853 1177763200985494846->7929250182810549625 1812271580384757900 chip.macs2_signal_track 1177763200985494846->1812271580384757900 1177763200985494846->-6753757229107726449 1177763200985494846->-4262601568769870390 1177763200985494846->-4662305966674381935 1177763200985494846->-8290754094739098810 -3219727131619157679 chip.filter -7913303548872139639 SAMstats QC -3219727131619157679->-7913303548872139639 -2633431139087706574 Filt/deduped BAM -3219727131619157679->-2633431139087706574 8197014431050749329 LibCmplx QC -3219727131619157679->8197014431050749329 -2633431139087706574->-3249107960196740271 -911049610006720845 chip.jsd -2633431139087706574->-911049610006720845 3278171218339454298 chip.align -4989078950719484958 SAMstats QC 3278171218339454298->-4989078950719484958 -5410990180739605001 BAM 3278171218339454298->-5410990180739605001 -5410990180739605001->-3219727131619157679 4898784348931044350 chip.xcor 3096171056608950544 XCOR Plot 4898784348931044350->3096171056608950544 8711008585471651024 BW FC 1812271580384757900->8711008585471651024 -8116039253044943285 BW p-val 1812271580384757900->-8116039253044943285 -8169617982217180805 FASTQ R1 (1) -8169617982217180805->3278171218339454298 -8169617982217180805->4898784348931044350 6509456850958491973 FASTQ R2 (1) 6509456850958491973->3278171218339454298 -748169359542345627 chip.call_peak -4811872873048150339 Peak (bfilt) -748169359542345627->-4811872873048150339 1020069957542246891 Peak -748169359542345627->1020069957542246891 1020069957542246891->34801863822899812 1020069957542246891->3023839565603855677 1020069957542246891->-4262601568769870390 1020069957542246891->-4662305966674381935 6322285901108466369 chip.bam2ta 7996088994324169854 TAG-ALIGN 6322285901108466369->7996088994324169854 7996088994324169854->-6294312049438464853 7996088994324169854->-748169359542345627 -3669873643611575799 chip.macs2_signal_track 7996088994324169854->-3669873643611575799 7996088994324169854->-6753757229107726449 7996088994324169854->-4262601568769870390 7996088994324169854->-4662305966674381935 7996088994324169854->-8290754094739098810 43911375985650013 chip.filter 5137122829579708889 SAMstats QC 43911375985650013->5137122829579708889 5116496948380181469 Filt/deduped BAM 43911375985650013->5116496948380181469 -3636932018541929653 LibCmplx QC 43911375985650013->-3636932018541929653 5116496948380181469->6322285901108466369 5116496948380181469->-911049610006720845 -3776984721075812388 chip.align -6212603198387521147 SAMstats QC -3776984721075812388->-6212603198387521147 5695484777777634310 BAM -3776984721075812388->5695484777777634310 5695484777777634310->43911375985650013 -2506084488217775671 chip.xcor 5518092725343989453 XCOR Plot -2506084488217775671->5518092725343989453 -1713173604812886634 BW FC -3669873643611575799->-1713173604812886634 -8752072612358262526 BW p-val -3669873643611575799->-8752072612358262526 -4478940568600000875 FASTQ R1 (1) -4478940568600000875->-3776984721075812388 -4478940568600000875->-2506084488217775671 761743424162375424 FASTQ R2 (1) 761743424162375424->-3776984721075812388 -7120671527126433358 chip.pool_ta_ctl -9168696177800921452 TAG-ALIGN -7120671527126433358->-9168696177800921452 -9168696177800921452->-4318738156923493528 -9168696177800921452->-7479586090380971012 -9168696177800921452->7929250182810549625 -9168696177800921452->1812271580384757900 -9168696177800921452->-748169359542345627 -9168696177800921452->-3669873643611575799 -9168696177800921452->-6753757229107726449 -9168696177800921452->-4262601568769870390 -9168696177800921452->-4662305966674381935 -9168696177800921452->-8290754094739098810 -5050301174424817074 chip.bam2ta_ctl -6853495300511918290 TAG-ALIGN -5050301174424817074->-6853495300511918290 -6853495300511918290->-7120671527126433358 -557932072841690998 Filt/deduped BAM -557932072841690998->-5050301174424817074 -557932072841690998->-911049610006720845 2418618375689365785 chip.bam2ta_ctl -2405722495309132835 TAG-ALIGN 2418618375689365785->-2405722495309132835 -2405722495309132835->-7120671527126433358 -8382927415407321913 Filt/deduped BAM -8382927415407321913->2418618375689365785 -8382927415407321913->-911049610006720845 -4854412320994308264 chip.bam2ta_ctl 5684560707708911756 TAG-ALIGN -4854412320994308264->5684560707708911756 5684560707708911756->-7120671527126433358 -7143808603850489732 Filt/deduped BAM -7143808603850489732->-4854412320994308264 -7143808603850489732->-911049610006720845 -4666679888919195584 chip.bam2ta_ctl -8760071426748331986 TAG-ALIGN -4666679888919195584->-8760071426748331986 -8760071426748331986->-7120671527126433358 6085952559743842673 Filt/deduped BAM 6085952559743842673->-4666679888919195584 6085952559743842673->-911049610006720845 -932888977036303744 chip.bam2ta_ctl 2133871145672774946 TAG-ALIGN -932888977036303744->2133871145672774946 2133871145672774946->-7120671527126433358 6985799078249394772 Filt/deduped BAM 6985799078249394772->-932888977036303744 6985799078249394772->-911049610006720845 627633610133373026 chip.bam2ta_ctl 8941222564889886430 TAG-ALIGN 627633610133373026->8941222564889886430 8941222564889886430->-7120671527126433358 3222228282932104597 Filt/deduped BAM 3222228282932104597->627633610133373026 3222228282932104597->-911049610006720845 -5365056237819480894 chip.bam2ta_ctl 1631853158584705776 TAG-ALIGN -5365056237819480894->1631853158584705776 1631853158584705776->-7120671527126433358 -3244501713479896794 Filt/deduped BAM -3244501713479896794->-5365056237819480894 -3244501713479896794->-911049610006720845 -3986203035250809054 chip.bam2ta_ctl 6315692233348222393 TAG-ALIGN -3986203035250809054->6315692233348222393 6315692233348222393->-7120671527126433358 -83411554999421946 Filt/deduped BAM -83411554999421946->-3986203035250809054 -83411554999421946->-911049610006720845 5376417406518460190 chip.bam2ta_ctl 4386169470577266704 TAG-ALIGN 5376417406518460190->4386169470577266704 4386169470577266704->-7120671527126433358 5741299325925555276 Filt/deduped BAM 5741299325925555276->5376417406518460190 5741299325925555276->-911049610006720845 2707596484872368734 chip.bam2ta_ctl 3476493126413341903 TAG-ALIGN 2707596484872368734->3476493126413341903 3476493126413341903->-7120671527126433358 3920001271877287034 Filt/deduped BAM 3920001271877287034->2707596484872368734 3920001271877287034->-911049610006720845 -3370815123772942235 chip.bam2ta_ctl -8770480292454356296 TAG-ALIGN -3370815123772942235->-8770480292454356296 -8770480292454356296->-7120671527126433358 1769488427330237481 Filt/deduped BAM 1769488427330237481->-3370815123772942235 1769488427330237481->-911049610006720845 -6190952786044747189 chip.bam2ta_ctl 6613206753403962019 TAG-ALIGN -6190952786044747189->6613206753403962019 6613206753403962019->-7120671527126433358 -815667534568576887 Filt/deduped BAM -815667534568576887->-6190952786044747189 -815667534568576887->-911049610006720845 -1297559407156576454 chip.bam2ta_ctl 1104103471857326242 TAG-ALIGN -1297559407156576454->1104103471857326242 1104103471857326242->-7120671527126433358 -7325893879224889986 Filt/deduped BAM -7325893879224889986->-1297559407156576454 -7325893879224889986->-911049610006720845 6932732840847224932 chip.bam2ta_ctl -6112359577476041674 TAG-ALIGN 6932732840847224932->-6112359577476041674 -6112359577476041674->-7120671527126433358 5473760787303050079 Filt/deduped BAM 5473760787303050079->6932732840847224932 5473760787303050079->-911049610006720845 5010821787827092770 chip.bam2ta_ctl -5516589267342754802 TAG-ALIGN 5010821787827092770->-5516589267342754802 -5516589267342754802->-7120671527126433358 4441333291485510320 Filt/deduped BAM 4441333291485510320->5010821787827092770 4441333291485510320->-911049610006720845 -4986744221132672888 chip.bam2ta_ctl 4000835494948734820 TAG-ALIGN -4986744221132672888->4000835494948734820 4000835494948734820->-7120671527126433358 1447896458000121955 Filt/deduped BAM 1447896458000121955->-4986744221132672888 1447896458000121955->-911049610006720845 -603931968077960606 chip.bam2ta_ctl -4040576608493711539 TAG-ALIGN -603931968077960606->-4040576608493711539 -4040576608493711539->-7120671527126433358 -1584063445239726133 Filt/deduped BAM -1584063445239726133->-603931968077960606 -1584063445239726133->-911049610006720845 -3549856116173136970 chip.bam2ta_ctl 6435198672327344313 TAG-ALIGN -3549856116173136970->6435198672327344313 6435198672327344313->-7120671527126433358 -3613325079641864132 Filt/deduped BAM -3613325079641864132->-3549856116173136970 -3613325079641864132->-911049610006720845 507902903675803023 chip.bam2ta_ctl -6134931783204645170 TAG-ALIGN 507902903675803023->-6134931783204645170 -6134931783204645170->-7120671527126433358 -1843130881019860599 Filt/deduped BAM -1843130881019860599->507902903675803023 -1843130881019860599->-911049610006720845 -6811277409576458822 chip.bam2ta_ctl -3262951098311662702 TAG-ALIGN -6811277409576458822->-3262951098311662702 -3262951098311662702->-7120671527126433358 -3764883714171688101 Filt/deduped BAM -3764883714171688101->-6811277409576458822 -3764883714171688101->-911049610006720845 -3619343959498505707 chip.bam2ta_ctl -6986591605990515409 TAG-ALIGN -3619343959498505707->-6986591605990515409 -6986591605990515409->-7120671527126433358 7829081181910484506 Filt/deduped BAM 7829081181910484506->-3619343959498505707 7829081181910484506->-911049610006720845 8139157036835551791 chip.bam2ta_ctl -6406872695692496742 TAG-ALIGN 8139157036835551791->-6406872695692496742 -6406872695692496742->-7120671527126433358 -798861197964128652 Filt/deduped BAM -798861197964128652->8139157036835551791 -798861197964128652->-911049610006720845 6412780444877426137 chip.bam2ta_ctl -977027534272524047 TAG-ALIGN 6412780444877426137->-977027534272524047 -977027534272524047->-7120671527126433358 -5930615214592272158 Filt/deduped BAM -5930615214592272158->6412780444877426137 -5930615214592272158->-911049610006720845 5825688670349590232 chip.bam2ta_ctl -2924373703084593765 TAG-ALIGN 5825688670349590232->-2924373703084593765 -2924373703084593765->-7120671527126433358 -8181389375245382354 Filt/deduped BAM -8181389375245382354->5825688670349590232 -8181389375245382354->-911049610006720845 -7847054962905620439 IDR Plot ppr -6753757229107726449->-7847054962905620439 4840575922650097936 IDR Peak ppr -6753757229107726449->4840575922650097936 4840575922650097936->-4662305966674381935 2645884437119497619 IDR Plot rep1_vs_rep2 34801863822899812->2645884437119497619 -2480300671921704396 IDR NPeak rep1_vs_rep2 34801863822899812->-2480300671921704396 -2480300671921704396->-4662305966674381935 5858156997033667754 Overlap Peak rep1_vs_rep2 3023839565603855677->5858156997033667754 5858156997033667754->-4262601568769870390 -4045412981217503251 Overlap Peak optimal -4262601568769870390->-4045412981217503251 -4082956974358654551 Overlap reproducibility -4262601568769870390->-4082956974358654551 -3912069189605981766 IDR Peak optimal -4662305966674381935->-3912069189605981766 -215061635550622574 IDR reproducibility -4662305966674381935->-215061635550622574 -492492690473206814 Overlap Peak ppr -8290754094739098810->-492492690473206814 -492492690473206814->-4262601568769870390 3942179647664689995 JSD Plot -911049610006720845->3942179647664689995

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/8ef5be82-e64b-4ecb-8eef-7469b7aaf580/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.463M.pval.signal.bigwig?Expires=1601333630&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=EjQS9T%2F%2Fm%2BOTp5%2Fao%2BuF8BKODx2crj63geJTmrhq%2FFctje4G6DcbY9hyAnXZC4Mhizc2ilWef476OCISO77ng8tqZzvuj038rF8%2B7q6mk3WgAJB7i8Wn7bjf9H3pEpAlVeozQraA4q9sCPfFafhazS2b%2BueRL6EYljIAoezhJu8sYx2EQhJteK2J1%2FtTqljTfYTTyFYKOA%2B1y%2BvoU7WAnJcsLbp4tnpimGsRJlj9%2Bbb1PG8vJ46%2BA%2FD9uOGST2nxM9JNbpqZKhGb3cxctEuS8ulKqYQL9GlUw%2B%2F4GaP50VCbDW2M113PypqdUpa5d1Cxt%2Bj83tf9Y3oVmpoDbIZzCw%3D%3D"
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