File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF594EJQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF594EJQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF594EJQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF594EJQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF594EJQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF677MGT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF677MGT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF677MGT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF677MGT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF677MGT.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF594EJQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF594EJQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF594EJQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF594EJQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF594EJQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF594EJQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF594EJQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF594EJQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF677MGT.crop_101-2bp.nodup.pr1_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF677MGT.crop_101-2bp.nodup.pr1_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF677MGT.crop_101-2bp.nodup.pr1_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF677MGT.crop_101-2bp.nodup.pr1_x_ctl.pooled.349M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF677MGT.crop_101-2bp.nodup.pr2_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF677MGT.crop_101-2bp.nodup.pr2_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF677MGT.crop_101-2bp.nodup.pr2_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF677MGT.crop_101-2bp.nodup.pr2_x_ctl.pooled.349M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.531M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF594EJQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF594EJQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF594EJQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF594EJQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF594EJQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF594EJQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF594EJQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF594EJQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF677MGT.crop_101-2bp.nodup.pr1_x_ctl.pooled.349M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF677MGT.crop_101-2bp.nodup.pr2_x_ctl.pooled.349M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF677MGT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF677MGT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF677MGT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF677MGT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF677MGT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3909b7ce-8bac-42b6-95a3-f0c94044b7e9/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF677MGT.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/911035fb-a61b-4097-b63a-232861a41387/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF594EJQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/41ac0fd3-a11d-4426-a82a-24e14e8c1e70/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a92d818c-9865-48b2-8ab3-477200f59981/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.531M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a92d818c-9865-48b2-8ab3-477200f59981/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.531M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a92d818c-9865-48b2-8ab3-477200f59981/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a92d818c-9865-48b2-8ab3-477200f59981/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF594EJQ.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a92d818c-9865-48b2-8ab3-477200f59981/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a92d818c-9865-48b2-8ab3-477200f59981/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF677MGT.crop_101-2bp.nodup_x_ctl.pooled.349M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -5941113070408355171 chip.macs2_signal_track_pooled -6510827334672296475 BW FC -5941113070408355171->-6510827334672296475 762705876791123968 BW p-val -5941113070408355171->762705876791123968 8128881455815869643 chip.call_peak_pooled -6036728784918772499 Peak (bfilt) 8128881455815869643->-6036728784918772499 6982862930948906457 Peak 8128881455815869643->6982862930948906457 -4812520157291395476 chip.idr_ppr 6982862930948906457->-4812520157291395476 -4749682742424862432 chip.idr 6982862930948906457->-4749682742424862432 -1794583966246576993 chip.overlap 6982862930948906457->-1794583966246576993 -1754725024145958573 chip.overlap_ppr 6982862930948906457->-1754725024145958573 -2205424373688867666 chip.pool_ta -368624180086788380 TAG-ALIGN -2205424373688867666->-368624180086788380 -368624180086788380->-5941113070408355171 -368624180086788380->8128881455815869643 -368624180086788380->-4812520157291395476 -368624180086788380->-4749682742424862432 -368624180086788380->-1794583966246576993 -368624180086788380->-1754725024145958573 6150047272892752522 chip.call_peak 4267541247771198711 Peak (bfilt) 6150047272892752522->4267541247771198711 5013363616839465598 Peak 6150047272892752522->5013363616839465598 5013363616839465598->-4749682742424862432 5013363616839465598->-1794583966246576993 8469438178962034065 chip.reproducibility_overlap 5013363616839465598->8469438178962034065 2319917740647935159 chip.reproducibility_idr 5013363616839465598->2319917740647935159 7752590270776822350 chip.bam2ta -5448209328234506989 TAG-ALIGN 7752590270776822350->-5448209328234506989 -5448209328234506989->-2205424373688867666 -5448209328234506989->6150047272892752522 -4906105826953485836 chip.macs2_signal_track -5448209328234506989->-4906105826953485836 -5448209328234506989->-4812520157291395476 -5448209328234506989->8469438178962034065 -5448209328234506989->2319917740647935159 -5448209328234506989->-1754725024145958573 303921470970737987 chip.filter -3960332525332249739 SAMstats QC 303921470970737987->-3960332525332249739 7263940246256999658 Filt/deduped BAM 303921470970737987->7263940246256999658 -9094307844569522420 LibCmplx QC 303921470970737987->-9094307844569522420 7263940246256999658->7752590270776822350 7951503215633027163 chip.jsd 7263940246256999658->7951503215633027163 -9059050246359061352 chip.align 328555851754270183 SAMstats QC -9059050246359061352->328555851754270183 -1534437836823430151 BAM -9059050246359061352->-1534437836823430151 -1534437836823430151->303921470970737987 -7130379516383248419 chip.xcor 8938643830914143285 XCOR Plot -7130379516383248419->8938643830914143285 592261372432112032 BW FC -4906105826953485836->592261372432112032 -1798556326248063482 BW p-val -4906105826953485836->-1798556326248063482 -3441545462377367418 FASTQ R1 (1) -3441545462377367418->-9059050246359061352 -3441545462377367418->-7130379516383248419 4118933097493548754 FASTQ R2 (1) 4118933097493548754->-9059050246359061352 -345694615604532028 chip.call_peak 6579120511799043815 Peak (bfilt) -345694615604532028->6579120511799043815 -6906309051193919132 Peak -345694615604532028->-6906309051193919132 -6906309051193919132->-4749682742424862432 -6906309051193919132->-1794583966246576993 -6906309051193919132->8469438178962034065 -6906309051193919132->2319917740647935159 -129066501700844714 chip.bam2ta 989486359199848103 TAG-ALIGN -129066501700844714->989486359199848103 989486359199848103->-2205424373688867666 989486359199848103->-345694615604532028 -1237065153542541865 chip.macs2_signal_track 989486359199848103->-1237065153542541865 989486359199848103->-4812520157291395476 989486359199848103->8469438178962034065 989486359199848103->2319917740647935159 989486359199848103->-1754725024145958573 3464585570873410859 chip.filter -1078587495967213052 SAMstats QC 3464585570873410859->-1078587495967213052 942887237442154117 Filt/deduped BAM 3464585570873410859->942887237442154117 6005378564084414586 LibCmplx QC 3464585570873410859->6005378564084414586 942887237442154117->-129066501700844714 942887237442154117->7951503215633027163 -257906770497651230 chip.align 7883924929748815432 SAMstats QC -257906770497651230->7883924929748815432 -350440704149155477 BAM -257906770497651230->-350440704149155477 -350440704149155477->3464585570873410859 -9140158314419129145 chip.xcor 1521229433393014256 XCOR Plot -9140158314419129145->1521229433393014256 -3943489974195427435 BW FC -1237065153542541865->-3943489974195427435 -3326082463303988442 BW p-val -1237065153542541865->-3326082463303988442 -1607006124120641561 FASTQ R1 (1) -1607006124120641561->-257906770497651230 -1607006124120641561->-9140158314419129145 -5599931685881159781 FASTQ R2 (1) -5599931685881159781->-257906770497651230 271528091590146184 chip.pool_ta_ctl 2066600833333081600 TAG-ALIGN 271528091590146184->2066600833333081600 2066600833333081600->-5941113070408355171 2066600833333081600->8128881455815869643 2066600833333081600->6150047272892752522 2066600833333081600->-4906105826953485836 2066600833333081600->-345694615604532028 2066600833333081600->-1237065153542541865 2066600833333081600->-4812520157291395476 2066600833333081600->8469438178962034065 2066600833333081600->2319917740647935159 2066600833333081600->-1754725024145958573 -4209711355092037187 chip.bam2ta_ctl -7262242459175414139 TAG-ALIGN -4209711355092037187->-7262242459175414139 -7262242459175414139->271528091590146184 -191730571659156180 Filt/deduped BAM -191730571659156180->-4209711355092037187 -191730571659156180->7951503215633027163 -6532824098806344986 chip.bam2ta_ctl 2847546676444502867 TAG-ALIGN -6532824098806344986->2847546676444502867 2847546676444502867->271528091590146184 -5380540706858340454 Filt/deduped BAM -5380540706858340454->-6532824098806344986 -5380540706858340454->7951503215633027163 -1719375237960580165 chip.bam2ta_ctl 3972649079737339729 TAG-ALIGN -1719375237960580165->3972649079737339729 3972649079737339729->271528091590146184 8088327927930259804 Filt/deduped BAM 8088327927930259804->-1719375237960580165 8088327927930259804->7951503215633027163 2688256448563007490 chip.bam2ta_ctl -4101329512274824496 TAG-ALIGN 2688256448563007490->-4101329512274824496 -4101329512274824496->271528091590146184 -2784161916100251283 Filt/deduped BAM -2784161916100251283->2688256448563007490 -2784161916100251283->7951503215633027163 1764612582362019530 chip.bam2ta_ctl -7132315799891151601 TAG-ALIGN 1764612582362019530->-7132315799891151601 -7132315799891151601->271528091590146184 -5872378996210494355 Filt/deduped BAM -5872378996210494355->1764612582362019530 -5872378996210494355->7951503215633027163 -3756562309583278600 chip.bam2ta_ctl 8079024219068470617 TAG-ALIGN -3756562309583278600->8079024219068470617 8079024219068470617->271528091590146184 4447701713204242518 Filt/deduped BAM 4447701713204242518->-3756562309583278600 4447701713204242518->7951503215633027163 -1889894221040724005 chip.bam2ta_ctl -5584502025166725494 TAG-ALIGN -1889894221040724005->-5584502025166725494 -5584502025166725494->271528091590146184 5462296868856319097 Filt/deduped BAM 5462296868856319097->-1889894221040724005 5462296868856319097->7951503215633027163 -660251071356130313 chip.bam2ta_ctl 7408750164088610946 TAG-ALIGN -660251071356130313->7408750164088610946 7408750164088610946->271528091590146184 5829190476383250026 Filt/deduped BAM 5829190476383250026->-660251071356130313 5829190476383250026->7951503215633027163 6277951297071314302 chip.bam2ta_ctl -1183706418839636191 TAG-ALIGN 6277951297071314302->-1183706418839636191 -1183706418839636191->271528091590146184 -6631916878196437509 Filt/deduped BAM -6631916878196437509->6277951297071314302 -6631916878196437509->7951503215633027163 5545115628288979013 chip.bam2ta_ctl 6151102938542975387 TAG-ALIGN 5545115628288979013->6151102938542975387 6151102938542975387->271528091590146184 2102662640073194053 Filt/deduped BAM 2102662640073194053->5545115628288979013 2102662640073194053->7951503215633027163 -7096009643639262380 chip.bam2ta_ctl -1314466312769181332 TAG-ALIGN -7096009643639262380->-1314466312769181332 -1314466312769181332->271528091590146184 623264800481153520 Filt/deduped BAM 623264800481153520->-7096009643639262380 623264800481153520->7951503215633027163 -2344943558908784448 chip.bam2ta_ctl -3841585644822561840 TAG-ALIGN -2344943558908784448->-3841585644822561840 -3841585644822561840->271528091590146184 1435437726893345643 Filt/deduped BAM 1435437726893345643->-2344943558908784448 1435437726893345643->7951503215633027163 7908097609081538949 chip.bam2ta_ctl 2688408018897646306 TAG-ALIGN 7908097609081538949->2688408018897646306 2688408018897646306->271528091590146184 1754682955905255725 Filt/deduped BAM 1754682955905255725->7908097609081538949 1754682955905255725->7951503215633027163 8194912597357009276 chip.bam2ta_ctl -8873928309615519739 TAG-ALIGN 8194912597357009276->-8873928309615519739 -8873928309615519739->271528091590146184 -8325216713214008074 Filt/deduped BAM -8325216713214008074->8194912597357009276 -8325216713214008074->7951503215633027163 5417823800154978103 chip.bam2ta_ctl 1450531859689676020 TAG-ALIGN 5417823800154978103->1450531859689676020 1450531859689676020->271528091590146184 -8680432455931680589 Filt/deduped BAM -8680432455931680589->5417823800154978103 -8680432455931680589->7951503215633027163 2833619055256157017 chip.bam2ta_ctl 8453507420243596494 TAG-ALIGN 2833619055256157017->8453507420243596494 8453507420243596494->271528091590146184 1136485527045013524 Filt/deduped BAM 1136485527045013524->2833619055256157017 1136485527045013524->7951503215633027163 -8626190000828182184 chip.bam2ta_ctl 706984006582947776 TAG-ALIGN -8626190000828182184->706984006582947776 706984006582947776->271528091590146184 -5750104407187361562 Filt/deduped BAM -5750104407187361562->-8626190000828182184 -5750104407187361562->7951503215633027163 6735996209875285179 chip.bam2ta_ctl 1626241101298079181 TAG-ALIGN 6735996209875285179->1626241101298079181 1626241101298079181->271528091590146184 -6668723896404953387 Filt/deduped BAM -6668723896404953387->6735996209875285179 -6668723896404953387->7951503215633027163 -487840193600578193 chip.bam2ta_ctl 8313082939631700115 TAG-ALIGN -487840193600578193->8313082939631700115 8313082939631700115->271528091590146184 -8333505155286340810 Filt/deduped BAM -8333505155286340810->-487840193600578193 -8333505155286340810->7951503215633027163 -3969054702019384106 chip.bam2ta_ctl -3649331440441665486 TAG-ALIGN -3969054702019384106->-3649331440441665486 -3649331440441665486->271528091590146184 3143435106618593347 Filt/deduped BAM 3143435106618593347->-3969054702019384106 3143435106618593347->7951503215633027163 6774084599621043927 chip.bam2ta_ctl -8356059530804979467 TAG-ALIGN 6774084599621043927->-8356059530804979467 -8356059530804979467->271528091590146184 277643517909768646 Filt/deduped BAM 277643517909768646->6774084599621043927 277643517909768646->7951503215633027163 -8987853920470316677 chip.bam2ta_ctl -5330405165960341527 TAG-ALIGN -8987853920470316677->-5330405165960341527 -5330405165960341527->271528091590146184 -5834867580725435355 Filt/deduped BAM -5834867580725435355->-8987853920470316677 -5834867580725435355->7951503215633027163 -7980112096013759985 chip.bam2ta_ctl 6684606516257665829 TAG-ALIGN -7980112096013759985->6684606516257665829 6684606516257665829->271528091590146184 -2247178665217999008 Filt/deduped BAM -2247178665217999008->-7980112096013759985 -2247178665217999008->7951503215633027163 -2409054459949334851 chip.bam2ta_ctl 375053798102500519 TAG-ALIGN -2409054459949334851->375053798102500519 375053798102500519->271528091590146184 -4177051528613767985 Filt/deduped BAM -4177051528613767985->-2409054459949334851 -4177051528613767985->7951503215633027163 943055062822298681 IDR Plot ppr -4812520157291395476->943055062822298681 -811023294364766476 IDR Peak ppr -4812520157291395476->-811023294364766476 -811023294364766476->2319917740647935159 3548011031178580446 IDR Plot rep1_vs_rep2 -4749682742424862432->3548011031178580446 3852787020923581012 IDR NPeak rep1_vs_rep2 -4749682742424862432->3852787020923581012 3852787020923581012->2319917740647935159 -3253527688509295045 Overlap Peak rep1_vs_rep2 -1794583966246576993->-3253527688509295045 -3253527688509295045->8469438178962034065 -2586724656689228850 Overlap Peak optimal 8469438178962034065->-2586724656689228850 3816284233027233286 Overlap reproducibility 8469438178962034065->3816284233027233286 1511550607233159597 IDR Peak optimal 2319917740647935159->1511550607233159597 -1599177005727422862 IDR reproducibility 2319917740647935159->-1599177005727422862 2243325741135695188 Overlap Peak ppr -1754725024145958573->2243325741135695188 2243325741135695188->8469438178962034065 -6801200816698092882 JSD Plot 7951503215633027163->-6801200816698092882

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