File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF809WZP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF809WZP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF809WZP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF809WZP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF809WZP.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF413PLS.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF413PLS.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413PLS.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413PLS.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF413PLS.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.517M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.517M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.517M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.517M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF809WZP.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF809WZP.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF809WZP.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF809WZP.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF809WZP.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF809WZP.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF809WZP.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF809WZP.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF413PLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.261M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF413PLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.261M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF413PLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.261M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF413PLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.261M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF413PLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.261M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF413PLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.261M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF413PLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.261M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF413PLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.261M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.517M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.517M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.517M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF809WZP.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF809WZP.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF809WZP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF809WZP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF809WZP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF809WZP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF809WZP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF809WZP.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413PLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.261M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413PLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.261M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF413PLS.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF413PLS.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF413PLS.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF413PLS.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413PLS.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413PLS.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF809WZP.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.517M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.517M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -1014730700309691235 chip.macs2_signal_track_pooled 7357414144063568722 BW FC -1014730700309691235->7357414144063568722 -596311263952265082 BW p-val -1014730700309691235->-596311263952265082 -6877735346377822301 chip.call_peak_pooled 4147750962661877154 Peak (bfilt) -6877735346377822301->4147750962661877154 -2160830088615873610 Peak -6877735346377822301->-2160830088615873610 6942000736353982539 chip.idr_ppr -2160830088615873610->6942000736353982539 6431073050223457827 chip.idr -2160830088615873610->6431073050223457827 -8738106273501179162 chip.overlap -2160830088615873610->-8738106273501179162 3781920899632213360 chip.overlap_ppr -2160830088615873610->3781920899632213360 3889429890443237467 chip.pool_ta 42250273104644478 TAG-ALIGN 3889429890443237467->42250273104644478 42250273104644478->-1014730700309691235 42250273104644478->-6877735346377822301 42250273104644478->6942000736353982539 42250273104644478->6431073050223457827 42250273104644478->-8738106273501179162 42250273104644478->3781920899632213360 -8471006859505661481 chip.call_peak -2378012505873563759 Peak (bfilt) -8471006859505661481->-2378012505873563759 -6769015880682929663 Peak -8471006859505661481->-6769015880682929663 -6769015880682929663->6431073050223457827 -6769015880682929663->-8738106273501179162 2101777442489574657 chip.reproducibility_overlap -6769015880682929663->2101777442489574657 2086613436118264038 chip.reproducibility_idr -6769015880682929663->2086613436118264038 56573874440260279 chip.bam2ta 6431208482646827787 TAG-ALIGN 56573874440260279->6431208482646827787 6431208482646827787->3889429890443237467 6431208482646827787->-8471006859505661481 4975425039742842057 chip.macs2_signal_track 6431208482646827787->4975425039742842057 6431208482646827787->6942000736353982539 6431208482646827787->2101777442489574657 6431208482646827787->2086613436118264038 6431208482646827787->3781920899632213360 -654591562355116368 chip.filter 4414790515121086413 SAMstats QC -654591562355116368->4414790515121086413 4199153170835026827 Filt/deduped BAM -654591562355116368->4199153170835026827 -4493670310381893850 LibCmplx QC -654591562355116368->-4493670310381893850 4199153170835026827->56573874440260279 -3118768136673818273 chip.jsd 4199153170835026827->-3118768136673818273 -2061856008713198204 chip.align -1172023716622102888 SAMstats QC -2061856008713198204->-1172023716622102888 -5273761911701180482 BAM -2061856008713198204->-5273761911701180482 -5273761911701180482->-654591562355116368 2715033683142064251 chip.xcor -4144055635689975368 XCOR Plot 2715033683142064251->-4144055635689975368 -1336997361309491832 BW FC 4975425039742842057->-1336997361309491832 -5415581008563282280 BW p-val 4975425039742842057->-5415581008563282280 869968270545642616 FASTQ R1 (1) 869968270545642616->-2061856008713198204 869968270545642616->2715033683142064251 -9125504837859588474 FASTQ R2 (1) -9125504837859588474->-2061856008713198204 -6595792946851012173 chip.call_peak -2641796427956848924 Peak (bfilt) -6595792946851012173->-2641796427956848924 -9040487615136669124 Peak -6595792946851012173->-9040487615136669124 -9040487615136669124->6431073050223457827 -9040487615136669124->-8738106273501179162 -9040487615136669124->2101777442489574657 -9040487615136669124->2086613436118264038 -6378379606376672474 chip.bam2ta 5748007744131406536 TAG-ALIGN -6378379606376672474->5748007744131406536 5748007744131406536->3889429890443237467 5748007744131406536->-6595792946851012173 -5134943119727784673 chip.macs2_signal_track 5748007744131406536->-5134943119727784673 5748007744131406536->6942000736353982539 5748007744131406536->2101777442489574657 5748007744131406536->2086613436118264038 5748007744131406536->3781920899632213360 7285792141004271849 chip.filter -5838624028301104448 SAMstats QC 7285792141004271849->-5838624028301104448 -4552645438865221436 Filt/deduped BAM 7285792141004271849->-4552645438865221436 871458188660418119 LibCmplx QC 7285792141004271849->871458188660418119 -4552645438865221436->-6378379606376672474 -4552645438865221436->-3118768136673818273 -1169000656181691835 chip.align 207070224721769710 SAMstats QC -1169000656181691835->207070224721769710 -2406934528209720625 BAM -1169000656181691835->-2406934528209720625 -2406934528209720625->7285792141004271849 -5162655528072946844 chip.xcor 6066683547962624894 XCOR Plot -5162655528072946844->6066683547962624894 5244317713465326740 BW FC -5134943119727784673->5244317713465326740 8246385226978102787 BW p-val -5134943119727784673->8246385226978102787 6281782099850615683 FASTQ R1 (1) 6281782099850615683->-1169000656181691835 6281782099850615683->-5162655528072946844 -6239933986005603458 FASTQ R2 (1) -6239933986005603458->-1169000656181691835 -5819281295712346931 chip.pool_ta_ctl 3110855220237685818 TAG-ALIGN -5819281295712346931->3110855220237685818 3110855220237685818->-1014730700309691235 3110855220237685818->-6877735346377822301 3110855220237685818->-8471006859505661481 3110855220237685818->4975425039742842057 3110855220237685818->-6595792946851012173 3110855220237685818->-5134943119727784673 3110855220237685818->6942000736353982539 3110855220237685818->2101777442489574657 3110855220237685818->2086613436118264038 3110855220237685818->3781920899632213360 -9084774260839460929 chip.bam2ta_ctl -8186194977050133937 TAG-ALIGN -9084774260839460929->-8186194977050133937 -8186194977050133937->-5819281295712346931 -7652690788986948588 Filt/deduped BAM -7652690788986948588->-9084774260839460929 -7652690788986948588->-3118768136673818273 -3753071197243709685 chip.bam2ta_ctl 7740181987446678971 TAG-ALIGN -3753071197243709685->7740181987446678971 7740181987446678971->-5819281295712346931 -4492582773919999205 Filt/deduped BAM -4492582773919999205->-3753071197243709685 -4492582773919999205->-3118768136673818273 -195137603693981240 chip.bam2ta_ctl 8599675907977429833 TAG-ALIGN -195137603693981240->8599675907977429833 8599675907977429833->-5819281295712346931 4927420931514149819 Filt/deduped BAM 4927420931514149819->-195137603693981240 4927420931514149819->-3118768136673818273 -1959026930259454423 chip.bam2ta_ctl 8493656540230845079 TAG-ALIGN -1959026930259454423->8493656540230845079 8493656540230845079->-5819281295712346931 157877695698664151 Filt/deduped BAM 157877695698664151->-1959026930259454423 157877695698664151->-3118768136673818273 8805221374206516614 chip.bam2ta_ctl 9006617636052571765 TAG-ALIGN 8805221374206516614->9006617636052571765 9006617636052571765->-5819281295712346931 -7589223157929075309 Filt/deduped BAM -7589223157929075309->8805221374206516614 -7589223157929075309->-3118768136673818273 -8077360183062186097 chip.bam2ta_ctl 87993600309676738 TAG-ALIGN -8077360183062186097->87993600309676738 87993600309676738->-5819281295712346931 8787127974966050744 Filt/deduped BAM 8787127974966050744->-8077360183062186097 8787127974966050744->-3118768136673818273 -7197585648340292387 chip.bam2ta_ctl -3481259117899587678 TAG-ALIGN -7197585648340292387->-3481259117899587678 -3481259117899587678->-5819281295712346931 -532378136713574213 Filt/deduped BAM -532378136713574213->-7197585648340292387 -532378136713574213->-3118768136673818273 -7875378475130955891 chip.bam2ta_ctl 4431790422295201567 TAG-ALIGN -7875378475130955891->4431790422295201567 4431790422295201567->-5819281295712346931 -6760788129724716585 Filt/deduped BAM -6760788129724716585->-7875378475130955891 -6760788129724716585->-3118768136673818273 -1337673491334532364 chip.bam2ta_ctl 2748692443177483664 TAG-ALIGN -1337673491334532364->2748692443177483664 2748692443177483664->-5819281295712346931 8176750140974197814 Filt/deduped BAM 8176750140974197814->-1337673491334532364 8176750140974197814->-3118768136673818273 -6053511680531371889 chip.bam2ta_ctl -9052420766153091594 TAG-ALIGN -6053511680531371889->-9052420766153091594 -9052420766153091594->-5819281295712346931 824984542076503688 Filt/deduped BAM 824984542076503688->-6053511680531371889 824984542076503688->-3118768136673818273 -4057210332928110132 chip.bam2ta_ctl -4388842194884185301 TAG-ALIGN -4057210332928110132->-4388842194884185301 -4388842194884185301->-5819281295712346931 -3889132064788676267 Filt/deduped BAM -3889132064788676267->-4057210332928110132 -3889132064788676267->-3118768136673818273 6626318694268251435 chip.bam2ta_ctl 2079869258537268520 TAG-ALIGN 6626318694268251435->2079869258537268520 2079869258537268520->-5819281295712346931 -8153967959243036944 Filt/deduped BAM -8153967959243036944->6626318694268251435 -8153967959243036944->-3118768136673818273 1848969383656337905 chip.bam2ta_ctl -8190661859389510414 TAG-ALIGN 1848969383656337905->-8190661859389510414 -8190661859389510414->-5819281295712346931 5231547378412464333 Filt/deduped BAM 5231547378412464333->1848969383656337905 5231547378412464333->-3118768136673818273 -1011333100749242629 chip.bam2ta_ctl 3961046003562213211 TAG-ALIGN -1011333100749242629->3961046003562213211 3961046003562213211->-5819281295712346931 -7079666583800437305 Filt/deduped BAM -7079666583800437305->-1011333100749242629 -7079666583800437305->-3118768136673818273 4589987098172007203 chip.bam2ta_ctl -8791524132565752470 TAG-ALIGN 4589987098172007203->-8791524132565752470 -8791524132565752470->-5819281295712346931 -7937966671182311587 Filt/deduped BAM -7937966671182311587->4589987098172007203 -7937966671182311587->-3118768136673818273 -2199961994032035845 chip.bam2ta_ctl -5018256122630805107 TAG-ALIGN -2199961994032035845->-5018256122630805107 -5018256122630805107->-5819281295712346931 3123406324565852059 Filt/deduped BAM 3123406324565852059->-2199961994032035845 3123406324565852059->-3118768136673818273 -8392583365138404519 chip.bam2ta_ctl 2154509413083651152 TAG-ALIGN -8392583365138404519->2154509413083651152 2154509413083651152->-5819281295712346931 3040216887632003235 Filt/deduped BAM 3040216887632003235->-8392583365138404519 3040216887632003235->-3118768136673818273 -6818563457462458411 chip.bam2ta_ctl -3968830726977605131 TAG-ALIGN -6818563457462458411->-3968830726977605131 -3968830726977605131->-5819281295712346931 -596039249316514325 Filt/deduped BAM -596039249316514325->-6818563457462458411 -596039249316514325->-3118768136673818273 -3368343538892720041 chip.bam2ta_ctl 2998247748878200009 TAG-ALIGN -3368343538892720041->2998247748878200009 2998247748878200009->-5819281295712346931 5535594577695957824 Filt/deduped BAM 5535594577695957824->-3368343538892720041 5535594577695957824->-3118768136673818273 2102012736381407911 chip.bam2ta_ctl -8787279352390672460 TAG-ALIGN 2102012736381407911->-8787279352390672460 -8787279352390672460->-5819281295712346931 -2992508294450520032 Filt/deduped BAM -2992508294450520032->2102012736381407911 -2992508294450520032->-3118768136673818273 6378589983860472374 chip.bam2ta_ctl 7816173907402075013 TAG-ALIGN 6378589983860472374->7816173907402075013 7816173907402075013->-5819281295712346931 7528839612488522467 Filt/deduped BAM 7528839612488522467->6378589983860472374 7528839612488522467->-3118768136673818273 -2080584860066711823 chip.bam2ta_ctl 1417752083393596361 TAG-ALIGN -2080584860066711823->1417752083393596361 1417752083393596361->-5819281295712346931 2700168776331714143 Filt/deduped BAM 2700168776331714143->-2080584860066711823 2700168776331714143->-3118768136673818273 3172771211695854223 chip.bam2ta_ctl 5986862697144702600 TAG-ALIGN 3172771211695854223->5986862697144702600 5986862697144702600->-5819281295712346931 2109139871842273195 Filt/deduped BAM 2109139871842273195->3172771211695854223 2109139871842273195->-3118768136673818273 -5088923414014872760 chip.bam2ta_ctl 5211000049980995846 TAG-ALIGN -5088923414014872760->5211000049980995846 5211000049980995846->-5819281295712346931 8917871200121547269 Filt/deduped BAM 8917871200121547269->-5088923414014872760 8917871200121547269->-3118768136673818273 6783969739092742365 IDR Plot ppr 6942000736353982539->6783969739092742365 -3469217717535725147 IDR Peak ppr 6942000736353982539->-3469217717535725147 -3469217717535725147->2086613436118264038 587810287048306066 IDR Plot rep1_vs_rep2 6431073050223457827->587810287048306066 -570840270721441031 IDR NPeak rep1_vs_rep2 6431073050223457827->-570840270721441031 -570840270721441031->2086613436118264038 -6972523065194132551 Overlap Peak rep1_vs_rep2 -8738106273501179162->-6972523065194132551 -6972523065194132551->2101777442489574657 1526305677578505207 Overlap Peak optimal 2101777442489574657->1526305677578505207 -9198869032416351405 Overlap reproducibility 2101777442489574657->-9198869032416351405 763373891864765366 IDR Peak optimal 2086613436118264038->763373891864765366 -4163227724993737447 IDR reproducibility 2086613436118264038->-4163227724993737447 -6178630415309197281 Overlap Peak ppr 3781920899632213360->-6178630415309197281 -6178630415309197281->2101777442489574657 4367297589949263584 JSD Plot -3118768136673818273->4367297589949263584

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF809WZP.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig?Expires=1601341216&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=3aXy2iWdlc11Q7f%2BLRLK2BqLJ4nsKt7nw4hS8awU2GxmGFTgB4fVJKnosS%2BN5ulU4NHlP2yl2VLYCUTl2ZLRLArywM6qSQT2XRgVFip5JxQcs7MXqGI72oUrJgS1l%2BwkuK9WCWaftAltKDFgc3ZtDsE4G9C%2BMoAWm0xuCLbsSYcEmhINUJ60XX%2BVh6NoWAGaIDgm%2BPbXyV6HeV8n%2F1sZTnZKWW7O9%2B57GgBKC44c5HASo3vmzDeWUKTnFS16jOzUxTI6wCmA48O6VC45D5YJQ55dYUd9llYQetD3L8%2F3RTBe4rtBLqxlF6m%2FfU7rswIQwCUI8lVT94QS%2BHfMIv0QsQ%3D%3D"
track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF413PLS.crop_101-2bp.nodup_x_ctl.pooled.261M.fc.signal.bigwig?Expires=1601341216&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=4%2FXrLpJTw7GTvy1qV5UL5kmesdAFO7nrmuJIIW4tDLqIuyjWP7Bv6VXHrHXRtofy9GiCjIuRxpty4YmXERl1cZimO2VE4MTLF5zUDJkwVbqXiVu%2BIicE5yvJP3iAiyHuRPn%2FnodEdtvIv5Ml8nhaVyoohPSRrkcO6LS9ydKwilAvFj7SL113JrV5WMN5gdCGoBQlCYjOTdCe7xOQZaHxyLBYiK1k2MQce1iSAH%2FpAAgtsiYnaBF6Ju75%2BSKAemC5MtPgmJkwCV3p4he5Kl3%2FCETig%2BiKiXW8rrnTsKcVbmKmmZMQpwzRVWS2Yx924FMAzNF8wgmcZG4xiwH26xT%2Bhw%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d790fdad-5b2e-4ffb-b71b-9306c27a007f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.517M.pval.signal.bigwig?Expires=1601341216&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=zHw8p5Z7e1calPIDloMLOLwdoRqq2TsJ2%2F%2FTPqqlMVEyC7AZkVZBc5y4YDRe05z1E0srp1VzFK55E5r%2Fkc9NQxwwa1P8%2BahXccFvMqporAwzYnA6EBniziSaXtcPvHgYu%2B4ngFn8E9icepbGYuFFXkpPPZu0q0%2Fb3Mf0qrgVSJuR%2BlA6lwWuD91tgEkSaaBqMt8Bosd5A%2BDv%2FIDQLt%2Bb8joOGz57Mf0EtV1c6OZTW4lfcxzri%2FdR%2B7zQ9poIrpQk0xX80r2Kr7ZBzfMRmm%2BNLjecfXarjocQPCfXmMIlildYRXtboITN0ErP0Z1Xfw6u5IEwJiNITr1Cwe1QqI%2B%2BDg%3D%3D"
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