File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF999JFC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF999JFC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF999JFC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF999JFC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF999JFC.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF053VVJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF053VVJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF053VVJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF053VVJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF053VVJ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.508M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.508M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.508M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.508M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF999JFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF999JFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF999JFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF999JFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF999JFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF999JFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF999JFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF999JFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF053VVJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF053VVJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF053VVJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF053VVJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF053VVJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF053VVJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF053VVJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF053VVJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.508M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.508M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.508M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF999JFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF999JFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF999JFC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF999JFC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF999JFC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF999JFC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF999JFC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF999JFC.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF053VVJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.305M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF053VVJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.305M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF053VVJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF053VVJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF053VVJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF053VVJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF053VVJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF053VVJ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF999JFC.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.508M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.508M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF999JFC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/a3fc43fd-9977-40d2-be0f-c36ba9f8ddd9/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF053VVJ.crop_101-2bp.nodup_x_ctl.pooled.305M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 4602263990006271540 chip.macs2_signal_track_pooled -6335908649613317199 BW FC 4602263990006271540->-6335908649613317199 -4274645404014853169 BW p-val 4602263990006271540->-4274645404014853169 -168848366985284640 chip.call_peak_pooled 7930464799376328612 Peak (bfilt) -168848366985284640->7930464799376328612 -3272061231503234396 Peak -168848366985284640->-3272061231503234396 4687932452776095517 chip.idr_ppr -3272061231503234396->4687932452776095517 -1008256676333134394 chip.idr -3272061231503234396->-1008256676333134394 -3817645107841223038 chip.overlap -3272061231503234396->-3817645107841223038 -5698990553789037326 chip.overlap_ppr -3272061231503234396->-5698990553789037326 3496938279197680529 chip.pool_ta -8937878640641571599 TAG-ALIGN 3496938279197680529->-8937878640641571599 -8937878640641571599->4602263990006271540 -8937878640641571599->-168848366985284640 -8937878640641571599->4687932452776095517 -8937878640641571599->-1008256676333134394 -8937878640641571599->-3817645107841223038 -8937878640641571599->-5698990553789037326 -6047632154827855947 chip.call_peak -1138946864793590115 Peak (bfilt) -6047632154827855947->-1138946864793590115 -6520664743560731807 Peak -6047632154827855947->-6520664743560731807 -6520664743560731807->-1008256676333134394 -6520664743560731807->-3817645107841223038 8573292921273394766 chip.reproducibility_overlap -6520664743560731807->8573292921273394766 -6709855233752631518 chip.reproducibility_idr -6520664743560731807->-6709855233752631518 7911502684168975658 chip.bam2ta 1434533658905385992 TAG-ALIGN 7911502684168975658->1434533658905385992 1434533658905385992->3496938279197680529 1434533658905385992->-6047632154827855947 -1434948997451350304 chip.macs2_signal_track 1434533658905385992->-1434948997451350304 1434533658905385992->4687932452776095517 1434533658905385992->8573292921273394766 1434533658905385992->-6709855233752631518 1434533658905385992->-5698990553789037326 332104910738500939 chip.filter 5151558035083365579 SAMstats QC 332104910738500939->5151558035083365579 7446806010008368382 Filt/deduped BAM 332104910738500939->7446806010008368382 1973238904728799423 LibCmplx QC 332104910738500939->1973238904728799423 7446806010008368382->7911502684168975658 -481531182392211505 chip.jsd 7446806010008368382->-481531182392211505 6588408683838926372 chip.jsd 7446806010008368382->6588408683838926372 7120656558124163537 chip.align -7273834655713525726 SAMstats QC 7120656558124163537->-7273834655713525726 -855533350010327405 BAM 7120656558124163537->-855533350010327405 -855533350010327405->332104910738500939 1087326841368166156 chip.xcor -4488382102152323454 XCOR Plot 1087326841368166156->-4488382102152323454 -2961316315502384493 BW FC -1434948997451350304->-2961316315502384493 -6851207966533822443 BW p-val -1434948997451350304->-6851207966533822443 4178279611220286926 FASTQ R1 (1) 4178279611220286926->7120656558124163537 4178279611220286926->1087326841368166156 -8460895258780259378 FASTQ R2 (1) -8460895258780259378->7120656558124163537 3057758151475952464 chip.call_peak -3038721454674314229 Peak (bfilt) 3057758151475952464->-3038721454674314229 6793281895490582588 Peak 3057758151475952464->6793281895490582588 6793281895490582588->-1008256676333134394 6793281895490582588->-3817645107841223038 6793281895490582588->8573292921273394766 6793281895490582588->-6709855233752631518 1957693852591960241 chip.bam2ta 5500739836133166442 TAG-ALIGN 1957693852591960241->5500739836133166442 5500739836133166442->3496938279197680529 5500739836133166442->3057758151475952464 8784347282427850248 chip.macs2_signal_track 5500739836133166442->8784347282427850248 5500739836133166442->4687932452776095517 5500739836133166442->8573292921273394766 5500739836133166442->-6709855233752631518 5500739836133166442->-5698990553789037326 -2810037175362628298 chip.filter 7106747884230584349 SAMstats QC -2810037175362628298->7106747884230584349 -2814652985506521264 Filt/deduped BAM -2810037175362628298->-2814652985506521264 -2884773436222685732 LibCmplx QC -2810037175362628298->-2884773436222685732 -2814652985506521264->1957693852591960241 -2814652985506521264->-481531182392211505 -2814652985506521264->6588408683838926372 -4263570048803851108 chip.align -7879262408034950598 SAMstats QC -4263570048803851108->-7879262408034950598 -6499389969490761312 BAM -4263570048803851108->-6499389969490761312 -6499389969490761312->-2810037175362628298 6971740721143931099 chip.xcor 3624002874433318501 XCOR Plot 6971740721143931099->3624002874433318501 1109639357743358541 BW FC 8784347282427850248->1109639357743358541 -7635028599238556606 BW p-val 8784347282427850248->-7635028599238556606 8454114071691480552 FASTQ R1 (1) 8454114071691480552->-4263570048803851108 8454114071691480552->6971740721143931099 -3417734160261712081 FASTQ R2 (1) -3417734160261712081->-4263570048803851108 -3120936018778060234 chip.pool_ta_ctl 6378427309980926283 TAG-ALIGN -3120936018778060234->6378427309980926283 6378427309980926283->4602263990006271540 6378427309980926283->-168848366985284640 6378427309980926283->-6047632154827855947 6378427309980926283->-1434948997451350304 6378427309980926283->3057758151475952464 6378427309980926283->8784347282427850248 6378427309980926283->4687932452776095517 6378427309980926283->8573292921273394766 6378427309980926283->-6709855233752631518 6378427309980926283->-5698990553789037326 -4833844488435049546 chip.bam2ta_ctl -404234871031525373 TAG-ALIGN -4833844488435049546->-404234871031525373 -404234871031525373->-3120936018778060234 454564314468414149 Filt/deduped BAM 454564314468414149->-4833844488435049546 454564314468414149->-481531182392211505 454564314468414149->6588408683838926372 644473140097736975 chip.bam2ta_ctl -7550728633592676907 TAG-ALIGN 644473140097736975->-7550728633592676907 -7550728633592676907->-3120936018778060234 6905152586820619785 Filt/deduped BAM 6905152586820619785->644473140097736975 6905152586820619785->-481531182392211505 6905152586820619785->6588408683838926372 -2787566879116659444 chip.bam2ta_ctl 2420404682380822316 TAG-ALIGN -2787566879116659444->2420404682380822316 2420404682380822316->-3120936018778060234 5076167706286735876 Filt/deduped BAM 5076167706286735876->-2787566879116659444 5076167706286735876->-481531182392211505 5076167706286735876->6588408683838926372 -6268060589684748653 chip.bam2ta_ctl -7532546718412713443 TAG-ALIGN -6268060589684748653->-7532546718412713443 -7532546718412713443->-3120936018778060234 -7783625054300616089 Filt/deduped BAM -7783625054300616089->-6268060589684748653 -7783625054300616089->-481531182392211505 -7783625054300616089->6588408683838926372 1662401781662667949 chip.bam2ta_ctl 5915207455602939032 TAG-ALIGN 1662401781662667949->5915207455602939032 5915207455602939032->-3120936018778060234 7643371917924301243 Filt/deduped BAM 7643371917924301243->1662401781662667949 7643371917924301243->-481531182392211505 7643371917924301243->6588408683838926372 6062217495628958822 chip.bam2ta_ctl -797654908997025035 TAG-ALIGN 6062217495628958822->-797654908997025035 -797654908997025035->-3120936018778060234 1918878357535213420 Filt/deduped BAM 1918878357535213420->6062217495628958822 1918878357535213420->-481531182392211505 1918878357535213420->6588408683838926372 -7261212101701989896 chip.bam2ta_ctl 8932898031016716110 TAG-ALIGN -7261212101701989896->8932898031016716110 8932898031016716110->-3120936018778060234 -8807877358527788422 Filt/deduped BAM -8807877358527788422->-7261212101701989896 -8807877358527788422->-481531182392211505 -8807877358527788422->6588408683838926372 -4586853461651624333 chip.bam2ta_ctl -8092868145953019778 TAG-ALIGN -4586853461651624333->-8092868145953019778 -8092868145953019778->-3120936018778060234 -7308338956233241278 Filt/deduped BAM -7308338956233241278->-4586853461651624333 -7308338956233241278->-481531182392211505 -7308338956233241278->6588408683838926372 6529693103070050638 chip.bam2ta_ctl -2145594716560188822 TAG-ALIGN 6529693103070050638->-2145594716560188822 -2145594716560188822->-3120936018778060234 -2343402570183614678 Filt/deduped BAM -2343402570183614678->6529693103070050638 -2343402570183614678->-481531182392211505 -2343402570183614678->6588408683838926372 7913640191438216963 chip.bam2ta_ctl -1440898263404972775 TAG-ALIGN 7913640191438216963->-1440898263404972775 -1440898263404972775->-3120936018778060234 -3899774821528104183 Filt/deduped BAM -3899774821528104183->7913640191438216963 -3899774821528104183->-481531182392211505 -3899774821528104183->6588408683838926372 -5062705141517081025 chip.bam2ta_ctl -6052612467236778763 TAG-ALIGN -5062705141517081025->-6052612467236778763 -6052612467236778763->-3120936018778060234 -8866307595068997384 Filt/deduped BAM -8866307595068997384->-5062705141517081025 -8866307595068997384->-481531182392211505 -8866307595068997384->6588408683838926372 8038309642114261760 chip.bam2ta_ctl -486537568735498337 TAG-ALIGN 8038309642114261760->-486537568735498337 -486537568735498337->-3120936018778060234 -5731065121631805282 Filt/deduped BAM -5731065121631805282->8038309642114261760 -5731065121631805282->-481531182392211505 -5731065121631805282->6588408683838926372 -633194566116374185 chip.bam2ta_ctl -273139784385039574 TAG-ALIGN -633194566116374185->-273139784385039574 -273139784385039574->-3120936018778060234 -1258280203766152045 Filt/deduped BAM -1258280203766152045->-633194566116374185 -1258280203766152045->-481531182392211505 -1258280203766152045->6588408683838926372 -8054844312132465666 chip.bam2ta_ctl -6669598767864838233 TAG-ALIGN -8054844312132465666->-6669598767864838233 -6669598767864838233->-3120936018778060234 4746025942401275554 Filt/deduped BAM 4746025942401275554->-8054844312132465666 4746025942401275554->-481531182392211505 4746025942401275554->6588408683838926372 -2070477090543065190 chip.bam2ta_ctl -3531157141611394828 TAG-ALIGN -2070477090543065190->-3531157141611394828 -3531157141611394828->-3120936018778060234 -2961944235040831394 Filt/deduped BAM -2961944235040831394->-2070477090543065190 -2961944235040831394->-481531182392211505 -2961944235040831394->6588408683838926372 844086030963181957 chip.bam2ta_ctl -4556221069944226695 TAG-ALIGN 844086030963181957->-4556221069944226695 -4556221069944226695->-3120936018778060234 9027468681598934945 Filt/deduped BAM 9027468681598934945->844086030963181957 9027468681598934945->-481531182392211505 9027468681598934945->6588408683838926372 -4125777610245933181 chip.bam2ta_ctl 5091742363550851684 TAG-ALIGN -4125777610245933181->5091742363550851684 5091742363550851684->-3120936018778060234 -3362843920528460971 Filt/deduped BAM -3362843920528460971->-4125777610245933181 -3362843920528460971->-481531182392211505 -3362843920528460971->6588408683838926372 -6466956386695996400 chip.bam2ta_ctl 590314880380377563 TAG-ALIGN -6466956386695996400->590314880380377563 590314880380377563->-3120936018778060234 -3646678473618601708 Filt/deduped BAM -3646678473618601708->-6466956386695996400 -3646678473618601708->-481531182392211505 -3646678473618601708->6588408683838926372 -309790001789435213 chip.bam2ta_ctl 801036455002372200 TAG-ALIGN -309790001789435213->801036455002372200 801036455002372200->-3120936018778060234 2299576634271002275 Filt/deduped BAM 2299576634271002275->-309790001789435213 2299576634271002275->-481531182392211505 2299576634271002275->6588408683838926372 36363693830884258 chip.bam2ta_ctl -3534765120571442031 TAG-ALIGN 36363693830884258->-3534765120571442031 -3534765120571442031->-3120936018778060234 5707441174766728854 Filt/deduped BAM 5707441174766728854->36363693830884258 5707441174766728854->-481531182392211505 5707441174766728854->6588408683838926372 8330350128799194355 chip.bam2ta_ctl -9200271759096716403 TAG-ALIGN 8330350128799194355->-9200271759096716403 -9200271759096716403->-3120936018778060234 4771722809018594830 Filt/deduped BAM 4771722809018594830->8330350128799194355 4771722809018594830->-481531182392211505 4771722809018594830->6588408683838926372 -5353738436926119895 chip.bam2ta_ctl 7665973007582446396 TAG-ALIGN -5353738436926119895->7665973007582446396 7665973007582446396->-3120936018778060234 -8606005063231683172 Filt/deduped BAM -8606005063231683172->-5353738436926119895 -8606005063231683172->-481531182392211505 -8606005063231683172->6588408683838926372 2014686907006040539 chip.bam2ta_ctl 3949519172708760207 TAG-ALIGN 2014686907006040539->3949519172708760207 3949519172708760207->-3120936018778060234 -1781731982658959058 Filt/deduped BAM -1781731982658959058->2014686907006040539 -1781731982658959058->-481531182392211505 -1781731982658959058->6588408683838926372 -2280989673394441723 chip.bam2ta_ctl -1626757565084778180 TAG-ALIGN -2280989673394441723->-1626757565084778180 -1626757565084778180->-3120936018778060234 -2817501207743606434 Filt/deduped BAM -2817501207743606434->-2280989673394441723 -2817501207743606434->-481531182392211505 -2817501207743606434->6588408683838926372 3631079729588804291 IDR Plot ppr 4687932452776095517->3631079729588804291 7877072931808449453 IDR Peak ppr 4687932452776095517->7877072931808449453 7877072931808449453->-6709855233752631518 -4363352991171755043 IDR Plot rep1_vs_rep2 -1008256676333134394->-4363352991171755043 5649923628997705930 IDR NPeak rep1_vs_rep2 -1008256676333134394->5649923628997705930 5649923628997705930->-6709855233752631518 2997532303599968828 Overlap Peak rep1_vs_rep2 -3817645107841223038->2997532303599968828 2997532303599968828->8573292921273394766 -951012838180112191 Overlap Peak optimal 8573292921273394766->-951012838180112191 -7607120495890172128 Overlap reproducibility 8573292921273394766->-7607120495890172128 -4430060171563873753 IDR Peak optimal -6709855233752631518->-4430060171563873753 1860678380608888276 IDR reproducibility -6709855233752631518->1860678380608888276 -7577789633532676585 Overlap Peak ppr -5698990553789037326->-7577789633532676585 -7577789633532676585->8573292921273394766 7912912110670383403 JSD Plot -481531182392211505->7912912110670383403 6588408683838926372->7912912110670383403

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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