File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF912ESY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF912ESY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF912ESY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF912ESY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF912ESY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF555XUI.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF555XUI.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF555XUI.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF555XUI.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF555XUI.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.650M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.650M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.650M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF912ESY.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF912ESY.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF912ESY.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF912ESY.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF912ESY.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF912ESY.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF912ESY.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF912ESY.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF555XUI.crop_101-2bp.nodup.pr1_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF555XUI.crop_101-2bp.nodup.pr1_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF555XUI.crop_101-2bp.nodup.pr1_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF555XUI.crop_101-2bp.nodup.pr1_x_ctl.pooled.364M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF555XUI.crop_101-2bp.nodup.pr2_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF555XUI.crop_101-2bp.nodup.pr2_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF555XUI.crop_101-2bp.nodup.pr2_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF555XUI.crop_101-2bp.nodup.pr2_x_ctl.pooled.364M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.650M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF912ESY.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF912ESY.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF912ESY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF912ESY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF912ESY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF912ESY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF912ESY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF912ESY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF555XUI.crop_101-2bp.nodup.pr1_x_ctl.pooled.364M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF555XUI.crop_101-2bp.nodup.pr2_x_ctl.pooled.364M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF555XUI.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF555XUI.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF555XUI.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF555XUI.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF555XUI.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF555XUI.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF912ESY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/0a9abf3e-0872-4862-af67-a8e28320c823/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.650M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.650M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF912ESY.crop_101-2bp.nodup_x_ctl.pooled.285M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1803803-56b7-44ee-bdad-7f62e6b39a23/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF555XUI.crop_101-2bp.nodup_x_ctl.pooled.364M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 4921276333149904997 chip.macs2_signal_track_pooled -4798875102743739037 BW FC 4921276333149904997->-4798875102743739037 7412462413213634798 BW p-val 4921276333149904997->7412462413213634798 -3650988714198927838 chip.call_peak_pooled 1097420722391040469 Peak (bfilt) -3650988714198927838->1097420722391040469 -5820391914570467241 Peak -3650988714198927838->-5820391914570467241 167167765778865713 chip.idr_ppr -5820391914570467241->167167765778865713 6725128167278421811 chip.idr -5820391914570467241->6725128167278421811 -5229483451028848155 chip.overlap -5820391914570467241->-5229483451028848155 -7759366700603225779 chip.overlap_ppr -5820391914570467241->-7759366700603225779 3933143230868233912 chip.pool_ta -8587279403179969029 TAG-ALIGN 3933143230868233912->-8587279403179969029 -8587279403179969029->4921276333149904997 -8587279403179969029->-3650988714198927838 -8587279403179969029->167167765778865713 -8587279403179969029->6725128167278421811 -8587279403179969029->-5229483451028848155 -8587279403179969029->-7759366700603225779 -2680578793746118737 chip.call_peak -6995646244205989433 Peak (bfilt) -2680578793746118737->-6995646244205989433 -1434286223698058991 Peak -2680578793746118737->-1434286223698058991 -1434286223698058991->6725128167278421811 -1434286223698058991->-5229483451028848155 874361418886211285 chip.reproducibility_overlap -1434286223698058991->874361418886211285 -8284390897743782371 chip.reproducibility_idr -1434286223698058991->-8284390897743782371 -3373201087937548805 chip.bam2ta -8527995670992119046 TAG-ALIGN -3373201087937548805->-8527995670992119046 -8527995670992119046->3933143230868233912 -8527995670992119046->-2680578793746118737 -554162575350225204 chip.macs2_signal_track -8527995670992119046->-554162575350225204 -8527995670992119046->167167765778865713 -8527995670992119046->874361418886211285 -8527995670992119046->-8284390897743782371 -8527995670992119046->-7759366700603225779 7428145458215178559 chip.filter -5147688689069264133 SAMstats QC 7428145458215178559->-5147688689069264133 -4041961277956090044 Filt/deduped BAM 7428145458215178559->-4041961277956090044 2970156411670500708 LibCmplx QC 7428145458215178559->2970156411670500708 -4041961277956090044->-3373201087937548805 1792745172784112552 chip.jsd -4041961277956090044->1792745172784112552 -671860876378213025 chip.align 6811282909130907016 SAMstats QC -671860876378213025->6811282909130907016 4232632658842092271 BAM -671860876378213025->4232632658842092271 4232632658842092271->7428145458215178559 5340376842833748546 chip.xcor 8521854417978924090 XCOR Plot 5340376842833748546->8521854417978924090 -7908343227597939280 BW FC -554162575350225204->-7908343227597939280 -6359591722490344421 BW p-val -554162575350225204->-6359591722490344421 -6913044020569350194 FASTQ R1 (1) -6913044020569350194->-671860876378213025 -6913044020569350194->5340376842833748546 -7209907240905533978 FASTQ R2 (1) -7209907240905533978->-671860876378213025 -8664545010129126167 chip.call_peak 6228257347847176109 Peak (bfilt) -8664545010129126167->6228257347847176109 -1220143241626747224 Peak -8664545010129126167->-1220143241626747224 -1220143241626747224->6725128167278421811 -1220143241626747224->-5229483451028848155 -1220143241626747224->874361418886211285 -1220143241626747224->-8284390897743782371 5277961933273949163 chip.bam2ta -4692773305124152580 TAG-ALIGN 5277961933273949163->-4692773305124152580 -4692773305124152580->3933143230868233912 -4692773305124152580->-8664545010129126167 -5701565502737224823 chip.macs2_signal_track -4692773305124152580->-5701565502737224823 -4692773305124152580->167167765778865713 -4692773305124152580->874361418886211285 -4692773305124152580->-8284390897743782371 -4692773305124152580->-7759366700603225779 7607175200908491806 chip.filter 8175812483030261570 SAMstats QC 7607175200908491806->8175812483030261570 -2177287461191233327 Filt/deduped BAM 7607175200908491806->-2177287461191233327 6892936268395540290 LibCmplx QC 7607175200908491806->6892936268395540290 -2177287461191233327->5277961933273949163 -2177287461191233327->1792745172784112552 -3250352063724597190 chip.align -1544149566274185997 SAMstats QC -3250352063724597190->-1544149566274185997 5641305773690890101 BAM -3250352063724597190->5641305773690890101 5641305773690890101->7607175200908491806 8464030031522224333 chip.xcor -1500828989355334846 XCOR Plot 8464030031522224333->-1500828989355334846 -882216379940851673 BW FC -5701565502737224823->-882216379940851673 4927136207276995171 BW p-val -5701565502737224823->4927136207276995171 -5055280146161194455 FASTQ R1 (1) -5055280146161194455->-3250352063724597190 -5055280146161194455->8464030031522224333 6264538705644663100 FASTQ R2 (1) 6264538705644663100->-3250352063724597190 -5089081678152456211 chip.pool_ta_ctl 1425141184720902836 TAG-ALIGN -5089081678152456211->1425141184720902836 1425141184720902836->4921276333149904997 1425141184720902836->-3650988714198927838 1425141184720902836->-2680578793746118737 1425141184720902836->-554162575350225204 1425141184720902836->-8664545010129126167 1425141184720902836->-5701565502737224823 1425141184720902836->167167765778865713 1425141184720902836->874361418886211285 1425141184720902836->-8284390897743782371 1425141184720902836->-7759366700603225779 -849550546891656226 chip.bam2ta_ctl -8120415023966248215 TAG-ALIGN -849550546891656226->-8120415023966248215 -8120415023966248215->-5089081678152456211 3350491808663783012 Filt/deduped BAM 3350491808663783012->-849550546891656226 3350491808663783012->1792745172784112552 -6453892641315716983 chip.bam2ta_ctl 4265655412657384138 TAG-ALIGN -6453892641315716983->4265655412657384138 4265655412657384138->-5089081678152456211 455813437259405465 Filt/deduped BAM 455813437259405465->-6453892641315716983 455813437259405465->1792745172784112552 -6360601740591349113 chip.bam2ta_ctl 5256675622901267812 TAG-ALIGN -6360601740591349113->5256675622901267812 5256675622901267812->-5089081678152456211 -7439827067895705652 Filt/deduped BAM -7439827067895705652->-6360601740591349113 -7439827067895705652->1792745172784112552 -3436842136623674803 chip.bam2ta_ctl 1796406403706178989 TAG-ALIGN -3436842136623674803->1796406403706178989 1796406403706178989->-5089081678152456211 -15912849317205350 Filt/deduped BAM -15912849317205350->-3436842136623674803 -15912849317205350->1792745172784112552 9194854792841848615 chip.bam2ta_ctl 3195249661763327665 TAG-ALIGN 9194854792841848615->3195249661763327665 3195249661763327665->-5089081678152456211 -6148608777775060039 Filt/deduped BAM -6148608777775060039->9194854792841848615 -6148608777775060039->1792745172784112552 -5837495580167172516 chip.bam2ta_ctl 57785052586940905 TAG-ALIGN -5837495580167172516->57785052586940905 57785052586940905->-5089081678152456211 8388383589103983065 Filt/deduped BAM 8388383589103983065->-5837495580167172516 8388383589103983065->1792745172784112552 -3002596458841618598 chip.bam2ta_ctl 1516432841943419747 TAG-ALIGN -3002596458841618598->1516432841943419747 1516432841943419747->-5089081678152456211 7710039080027427504 Filt/deduped BAM 7710039080027427504->-3002596458841618598 7710039080027427504->1792745172784112552 493905191342659852 chip.bam2ta_ctl -2083254907525213071 TAG-ALIGN 493905191342659852->-2083254907525213071 -2083254907525213071->-5089081678152456211 -7349740001099501413 Filt/deduped BAM -7349740001099501413->493905191342659852 -7349740001099501413->1792745172784112552 -4558621764661568485 chip.bam2ta_ctl -6595010254967464568 TAG-ALIGN -4558621764661568485->-6595010254967464568 -6595010254967464568->-5089081678152456211 8348414427556742218 Filt/deduped BAM 8348414427556742218->-4558621764661568485 8348414427556742218->1792745172784112552 -3294645980048275186 chip.bam2ta_ctl 4056820261059668363 TAG-ALIGN -3294645980048275186->4056820261059668363 4056820261059668363->-5089081678152456211 -5182274627548314979 Filt/deduped BAM -5182274627548314979->-3294645980048275186 -5182274627548314979->1792745172784112552 6828137182833720838 chip.bam2ta_ctl -4323363944392291042 TAG-ALIGN 6828137182833720838->-4323363944392291042 -4323363944392291042->-5089081678152456211 -8023912063353485877 Filt/deduped BAM -8023912063353485877->6828137182833720838 -8023912063353485877->1792745172784112552 3911793725364790191 chip.bam2ta_ctl -2284968002815896785 TAG-ALIGN 3911793725364790191->-2284968002815896785 -2284968002815896785->-5089081678152456211 -6529927470592315442 Filt/deduped BAM -6529927470592315442->3911793725364790191 -6529927470592315442->1792745172784112552 8713113212577047712 chip.bam2ta_ctl -3277362619105479188 TAG-ALIGN 8713113212577047712->-3277362619105479188 -3277362619105479188->-5089081678152456211 3451324870798477465 Filt/deduped BAM 3451324870798477465->8713113212577047712 3451324870798477465->1792745172784112552 6871135259378396565 chip.bam2ta_ctl -850074892759894791 TAG-ALIGN 6871135259378396565->-850074892759894791 -850074892759894791->-5089081678152456211 5969796657383668284 Filt/deduped BAM 5969796657383668284->6871135259378396565 5969796657383668284->1792745172784112552 62618539765647091 chip.bam2ta_ctl 8302928644957595452 TAG-ALIGN 62618539765647091->8302928644957595452 8302928644957595452->-5089081678152456211 7828742113325730900 Filt/deduped BAM 7828742113325730900->62618539765647091 7828742113325730900->1792745172784112552 -7007857025485616101 chip.bam2ta_ctl 9041206001527929422 TAG-ALIGN -7007857025485616101->9041206001527929422 9041206001527929422->-5089081678152456211 1804737696020785969 Filt/deduped BAM 1804737696020785969->-7007857025485616101 1804737696020785969->1792745172784112552 -3559707922284666706 chip.bam2ta_ctl 6193226575645852844 TAG-ALIGN -3559707922284666706->6193226575645852844 6193226575645852844->-5089081678152456211 -3880273826919977801 Filt/deduped BAM -3880273826919977801->-3559707922284666706 -3880273826919977801->1792745172784112552 3477667311895915424 chip.bam2ta_ctl 4871024426371017276 TAG-ALIGN 3477667311895915424->4871024426371017276 4871024426371017276->-5089081678152456211 -8116251068322018950 Filt/deduped BAM -8116251068322018950->3477667311895915424 -8116251068322018950->1792745172784112552 8294471369146396081 chip.bam2ta_ctl -1232969428133134798 TAG-ALIGN 8294471369146396081->-1232969428133134798 -1232969428133134798->-5089081678152456211 1174026994631647832 Filt/deduped BAM 1174026994631647832->8294471369146396081 1174026994631647832->1792745172784112552 1814613060045200273 chip.bam2ta_ctl 8110645287156605125 TAG-ALIGN 1814613060045200273->8110645287156605125 8110645287156605125->-5089081678152456211 -7472023632038857426 Filt/deduped BAM -7472023632038857426->1814613060045200273 -7472023632038857426->1792745172784112552 -3417350973536306697 chip.bam2ta_ctl -2240303517970778995 TAG-ALIGN -3417350973536306697->-2240303517970778995 -2240303517970778995->-5089081678152456211 -2960420361617809683 Filt/deduped BAM -2960420361617809683->-3417350973536306697 -2960420361617809683->1792745172784112552 -7430739893760866807 chip.bam2ta_ctl 1010821054045377616 TAG-ALIGN -7430739893760866807->1010821054045377616 1010821054045377616->-5089081678152456211 4726441089933770227 Filt/deduped BAM 4726441089933770227->-7430739893760866807 4726441089933770227->1792745172784112552 873214196225696358 chip.bam2ta_ctl 3535257222479535097 TAG-ALIGN 873214196225696358->3535257222479535097 3535257222479535097->-5089081678152456211 -1711196206982410810 Filt/deduped BAM -1711196206982410810->873214196225696358 -1711196206982410810->1792745172784112552 1158224505230896998 chip.bam2ta_ctl -3456918351483293672 TAG-ALIGN 1158224505230896998->-3456918351483293672 -3456918351483293672->-5089081678152456211 1442434609487980338 Filt/deduped BAM 1442434609487980338->1158224505230896998 1442434609487980338->1792745172784112552 -5243529512563346811 IDR Plot ppr 167167765778865713->-5243529512563346811 1203340903165320271 IDR Peak ppr 167167765778865713->1203340903165320271 1203340903165320271->-8284390897743782371 -2260856014158319327 IDR Plot rep1_vs_rep2 6725128167278421811->-2260856014158319327 6996948988706889799 IDR NPeak rep1_vs_rep2 6725128167278421811->6996948988706889799 6996948988706889799->-8284390897743782371 4535098986630044391 Overlap Peak rep1_vs_rep2 -5229483451028848155->4535098986630044391 4535098986630044391->874361418886211285 2787078699132622336 Overlap Peak optimal 874361418886211285->2787078699132622336 -5481176642231422097 Overlap reproducibility 874361418886211285->-5481176642231422097 2665301910782136405 IDR Peak optimal -8284390897743782371->2665301910782136405 1492809854231162708 IDR reproducibility -8284390897743782371->1492809854231162708 4131337896957058973 Overlap Peak ppr -7759366700603225779->4131337896957058973 4131337896957058973->874361418886211285 7624545218121947168 JSD Plot 1792745172784112552->7624545218121947168

UCSC browser tracks

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