File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF208PYP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF208PYP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF208PYP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF208PYP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF208PYP.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF855HOA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF855HOA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF855HOA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF855HOA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF855HOA.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.227M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.227M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.227M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.227M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF208PYP.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF208PYP.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF208PYP.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF208PYP.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF208PYP.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF208PYP.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF208PYP.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF208PYP.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF855HOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF855HOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF855HOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF855HOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF855HOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF855HOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF855HOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF855HOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.227M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.227M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.227M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF208PYP.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF208PYP.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF208PYP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF208PYP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF208PYP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF208PYP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF208PYP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF208PYP.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF855HOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF855HOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF855HOA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF855HOA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF855HOA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF855HOA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF855HOA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF855HOA.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF208PYP.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.227M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.227M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF208PYP.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/3fdc495b-3b9a-4ea6-a542-68dec7f5264e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF855HOA.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -2340760300850592122 chip.macs2_signal_track_pooled 4269545006781715120 BW FC -2340760300850592122->4269545006781715120 1262997406793334206 BW p-val -2340760300850592122->1262997406793334206 8417677511734669609 chip.call_peak_pooled 2937726605204524248 Peak (bfilt) 8417677511734669609->2937726605204524248 -23263084656987559 Peak 8417677511734669609->-23263084656987559 7511268717964465250 chip.idr_ppr -23263084656987559->7511268717964465250 6246975116918922555 chip.idr -23263084656987559->6246975116918922555 7776834614177296057 chip.overlap -23263084656987559->7776834614177296057 -8730844681954681220 chip.overlap_ppr -23263084656987559->-8730844681954681220 4995879297718797295 chip.pool_ta -5530727548612593045 TAG-ALIGN 4995879297718797295->-5530727548612593045 -5530727548612593045->-2340760300850592122 -5530727548612593045->8417677511734669609 -5530727548612593045->7511268717964465250 -5530727548612593045->6246975116918922555 -5530727548612593045->7776834614177296057 -5530727548612593045->-8730844681954681220 1667069066349270310 chip.call_peak -7808596582509213592 Peak (bfilt) 1667069066349270310->-7808596582509213592 2223809034382582389 Peak 1667069066349270310->2223809034382582389 2223809034382582389->6246975116918922555 2223809034382582389->7776834614177296057 -5012934507098495486 chip.reproducibility_overlap 2223809034382582389->-5012934507098495486 8165638549606577175 chip.reproducibility_idr 2223809034382582389->8165638549606577175 -5905341113809840190 chip.bam2ta -1002655028644654114 TAG-ALIGN -5905341113809840190->-1002655028644654114 -1002655028644654114->4995879297718797295 -1002655028644654114->1667069066349270310 5844775992906579221 chip.macs2_signal_track -1002655028644654114->5844775992906579221 -1002655028644654114->7511268717964465250 -1002655028644654114->-5012934507098495486 -1002655028644654114->8165638549606577175 -1002655028644654114->-8730844681954681220 -4633574607175315541 chip.filter 3279874887714100455 SAMstats QC -4633574607175315541->3279874887714100455 7314240868896477427 Filt/deduped BAM -4633574607175315541->7314240868896477427 7343498365375813464 LibCmplx QC -4633574607175315541->7343498365375813464 7314240868896477427->-5905341113809840190 7240684492747393638 chip.jsd 7314240868896477427->7240684492747393638 -9222355755544746043 chip.jsd 7314240868896477427->-9222355755544746043 669904555040162249 chip.align -2335836260162657238 SAMstats QC 669904555040162249->-2335836260162657238 -6321555302532108207 BAM 669904555040162249->-6321555302532108207 -6321555302532108207->-4633574607175315541 763349327635292070 chip.xcor 1459915881028603645 XCOR Plot 763349327635292070->1459915881028603645 -3044616146973264510 BW FC 5844775992906579221->-3044616146973264510 4714935802797061722 BW p-val 5844775992906579221->4714935802797061722 7311618825322105742 FASTQ R1 (1) 7311618825322105742->669904555040162249 7311618825322105742->763349327635292070 2916978361839685782 FASTQ R2 (1) 2916978361839685782->669904555040162249 6359040626767232095 chip.call_peak 2993531191614049495 Peak (bfilt) 6359040626767232095->2993531191614049495 7398414583250015945 Peak 6359040626767232095->7398414583250015945 7398414583250015945->6246975116918922555 7398414583250015945->7776834614177296057 7398414583250015945->-5012934507098495486 7398414583250015945->8165638549606577175 -3126457171742103489 chip.bam2ta -8563500852646439407 TAG-ALIGN -3126457171742103489->-8563500852646439407 -8563500852646439407->4995879297718797295 -8563500852646439407->6359040626767232095 3557521532263092215 chip.macs2_signal_track -8563500852646439407->3557521532263092215 -8563500852646439407->7511268717964465250 -8563500852646439407->-5012934507098495486 -8563500852646439407->8165638549606577175 -8563500852646439407->-8730844681954681220 4148772318679857267 chip.filter 6220654950571372529 SAMstats QC 4148772318679857267->6220654950571372529 -4683039544970201044 Filt/deduped BAM 4148772318679857267->-4683039544970201044 -482072683047310718 LibCmplx QC 4148772318679857267->-482072683047310718 -4683039544970201044->-3126457171742103489 -4683039544970201044->7240684492747393638 -4683039544970201044->-9222355755544746043 -5098997347787628321 chip.align -4476228554649505544 SAMstats QC -5098997347787628321->-4476228554649505544 6068069252051856981 BAM -5098997347787628321->6068069252051856981 6068069252051856981->4148772318679857267 5005059922567410995 chip.xcor 3112967832746923319 XCOR Plot 5005059922567410995->3112967832746923319 5595520898293283775 BW FC 3557521532263092215->5595520898293283775 1688570750731864870 BW p-val 3557521532263092215->1688570750731864870 4116850105828843007 FASTQ R1 (1) 4116850105828843007->-5098997347787628321 4116850105828843007->5005059922567410995 992847901182941954 FASTQ R2 (1) 992847901182941954->-5098997347787628321 -3292732461627464556 chip.pool_ta_ctl 2265956128969284691 TAG-ALIGN -3292732461627464556->2265956128969284691 2265956128969284691->-2340760300850592122 2265956128969284691->8417677511734669609 2265956128969284691->1667069066349270310 2265956128969284691->5844775992906579221 2265956128969284691->6359040626767232095 2265956128969284691->3557521532263092215 2265956128969284691->7511268717964465250 2265956128969284691->-5012934507098495486 2265956128969284691->8165638549606577175 2265956128969284691->-8730844681954681220 -1155871070793391247 chip.bam2ta_ctl -8296847443193656569 TAG-ALIGN -1155871070793391247->-8296847443193656569 -8296847443193656569->-3292732461627464556 -6253473691006311952 Filt/deduped BAM -6253473691006311952->-1155871070793391247 -6253473691006311952->7240684492747393638 -6253473691006311952->-9222355755544746043 8478214971008340868 chip.bam2ta_ctl -8912952811536320220 TAG-ALIGN 8478214971008340868->-8912952811536320220 -8912952811536320220->-3292732461627464556 1456045821855807119 Filt/deduped BAM 1456045821855807119->8478214971008340868 1456045821855807119->7240684492747393638 1456045821855807119->-9222355755544746043 -8511361655795021541 chip.bam2ta_ctl 1493594217129599699 TAG-ALIGN -8511361655795021541->1493594217129599699 1493594217129599699->-3292732461627464556 3924284867920014212 Filt/deduped BAM 3924284867920014212->-8511361655795021541 3924284867920014212->7240684492747393638 3924284867920014212->-9222355755544746043 5899889868435632912 chip.bam2ta_ctl -5128329440897067102 TAG-ALIGN 5899889868435632912->-5128329440897067102 -5128329440897067102->-3292732461627464556 8246662388725317267 Filt/deduped BAM 8246662388725317267->5899889868435632912 8246662388725317267->7240684492747393638 8246662388725317267->-9222355755544746043 -2161626672384103259 chip.bam2ta_ctl -6651902884166967735 TAG-ALIGN -2161626672384103259->-6651902884166967735 -6651902884166967735->-3292732461627464556 4290022132108478014 Filt/deduped BAM 4290022132108478014->-2161626672384103259 4290022132108478014->7240684492747393638 4290022132108478014->-9222355755544746043 -2341744125839185237 chip.bam2ta_ctl 5479814747382432013 TAG-ALIGN -2341744125839185237->5479814747382432013 5479814747382432013->-3292732461627464556 -381956321352722745 Filt/deduped BAM -381956321352722745->-2341744125839185237 -381956321352722745->7240684492747393638 -381956321352722745->-9222355755544746043 4891723314134221405 chip.bam2ta_ctl 15465916802397646 TAG-ALIGN 4891723314134221405->15465916802397646 15465916802397646->-3292732461627464556 2885966453807390041 Filt/deduped BAM 2885966453807390041->4891723314134221405 2885966453807390041->7240684492747393638 2885966453807390041->-9222355755544746043 -2441923802023885690 chip.bam2ta_ctl -3927442521613928408 TAG-ALIGN -2441923802023885690->-3927442521613928408 -3927442521613928408->-3292732461627464556 429261938142715003 Filt/deduped BAM 429261938142715003->-2441923802023885690 429261938142715003->7240684492747393638 429261938142715003->-9222355755544746043 5806868782633520967 chip.bam2ta_ctl -1660101336935881152 TAG-ALIGN 5806868782633520967->-1660101336935881152 -1660101336935881152->-3292732461627464556 -3807430984425836945 Filt/deduped BAM -3807430984425836945->5806868782633520967 -3807430984425836945->7240684492747393638 -3807430984425836945->-9222355755544746043 -7488479841521015125 chip.bam2ta_ctl 554337488831414042 TAG-ALIGN -7488479841521015125->554337488831414042 554337488831414042->-3292732461627464556 6948684312295546434 Filt/deduped BAM 6948684312295546434->-7488479841521015125 6948684312295546434->7240684492747393638 6948684312295546434->-9222355755544746043 -3139178323387570749 chip.bam2ta_ctl -5882740019166764443 TAG-ALIGN -3139178323387570749->-5882740019166764443 -5882740019166764443->-3292732461627464556 703652898239623298 Filt/deduped BAM 703652898239623298->-3139178323387570749 703652898239623298->7240684492747393638 703652898239623298->-9222355755544746043 -2220273999502944159 chip.bam2ta_ctl -2467787479651617835 TAG-ALIGN -2220273999502944159->-2467787479651617835 -2467787479651617835->-3292732461627464556 -7892541604667667541 Filt/deduped BAM -7892541604667667541->-2220273999502944159 -7892541604667667541->7240684492747393638 -7892541604667667541->-9222355755544746043 109118096860767006 chip.bam2ta_ctl 2636571796344026544 TAG-ALIGN 109118096860767006->2636571796344026544 2636571796344026544->-3292732461627464556 -7774900996406646074 Filt/deduped BAM -7774900996406646074->109118096860767006 -7774900996406646074->7240684492747393638 -7774900996406646074->-9222355755544746043 5044792627582453338 chip.bam2ta_ctl -6927495601784866308 TAG-ALIGN 5044792627582453338->-6927495601784866308 -6927495601784866308->-3292732461627464556 8989153315659438697 Filt/deduped BAM 8989153315659438697->5044792627582453338 8989153315659438697->7240684492747393638 8989153315659438697->-9222355755544746043 -5330011639001584020 chip.bam2ta_ctl 7621919167156044671 TAG-ALIGN -5330011639001584020->7621919167156044671 7621919167156044671->-3292732461627464556 3672092239232576927 Filt/deduped BAM 3672092239232576927->-5330011639001584020 3672092239232576927->7240684492747393638 3672092239232576927->-9222355755544746043 -2969680422955190383 chip.bam2ta_ctl 2321675917132889832 TAG-ALIGN -2969680422955190383->2321675917132889832 2321675917132889832->-3292732461627464556 -169529053374119244 Filt/deduped BAM -169529053374119244->-2969680422955190383 -169529053374119244->7240684492747393638 -169529053374119244->-9222355755544746043 -6547511329929754010 chip.bam2ta_ctl 2008997952656693353 TAG-ALIGN -6547511329929754010->2008997952656693353 2008997952656693353->-3292732461627464556 -3955933623598849579 Filt/deduped BAM -3955933623598849579->-6547511329929754010 -3955933623598849579->7240684492747393638 -3955933623598849579->-9222355755544746043 5256150393283464215 chip.bam2ta_ctl 7170751627489090604 TAG-ALIGN 5256150393283464215->7170751627489090604 7170751627489090604->-3292732461627464556 -9167779425097379896 Filt/deduped BAM -9167779425097379896->5256150393283464215 -9167779425097379896->7240684492747393638 -9167779425097379896->-9222355755544746043 -7744324634223103725 chip.bam2ta_ctl -1453804511065393071 TAG-ALIGN -7744324634223103725->-1453804511065393071 -1453804511065393071->-3292732461627464556 -7427858057693412594 Filt/deduped BAM -7427858057693412594->-7744324634223103725 -7427858057693412594->7240684492747393638 -7427858057693412594->-9222355755544746043 1712704930904136147 chip.bam2ta_ctl 8788879631869003894 TAG-ALIGN 1712704930904136147->8788879631869003894 8788879631869003894->-3292732461627464556 -5888347949749481504 Filt/deduped BAM -5888347949749481504->1712704930904136147 -5888347949749481504->7240684492747393638 -5888347949749481504->-9222355755544746043 1746426391483889689 chip.bam2ta_ctl 6049418624248071716 TAG-ALIGN 1746426391483889689->6049418624248071716 6049418624248071716->-3292732461627464556 -9046537606409779319 Filt/deduped BAM -9046537606409779319->1746426391483889689 -9046537606409779319->7240684492747393638 -9046537606409779319->-9222355755544746043 -96196025875028024 chip.bam2ta_ctl 4375358184188670848 TAG-ALIGN -96196025875028024->4375358184188670848 4375358184188670848->-3292732461627464556 -3343123755201068093 Filt/deduped BAM -3343123755201068093->-96196025875028024 -3343123755201068093->7240684492747393638 -3343123755201068093->-9222355755544746043 -7306280741082778311 chip.bam2ta_ctl -6598517779502489294 TAG-ALIGN -7306280741082778311->-6598517779502489294 -6598517779502489294->-3292732461627464556 2916561818565430849 Filt/deduped BAM 2916561818565430849->-7306280741082778311 2916561818565430849->7240684492747393638 2916561818565430849->-9222355755544746043 -506004198260152593 chip.bam2ta_ctl -4012365989896863713 TAG-ALIGN -506004198260152593->-4012365989896863713 -4012365989896863713->-3292732461627464556 -8248549734911415297 Filt/deduped BAM -8248549734911415297->-506004198260152593 -8248549734911415297->7240684492747393638 -8248549734911415297->-9222355755544746043 3212347471401246156 IDR Plot ppr 7511268717964465250->3212347471401246156 -5437848272742243869 IDR Peak ppr 7511268717964465250->-5437848272742243869 -5437848272742243869->8165638549606577175 -2171603443479575127 IDR Plot rep1_vs_rep2 6246975116918922555->-2171603443479575127 -4094611733815401169 IDR NPeak rep1_vs_rep2 6246975116918922555->-4094611733815401169 -4094611733815401169->8165638549606577175 5051413022817447576 Overlap Peak rep1_vs_rep2 7776834614177296057->5051413022817447576 5051413022817447576->-5012934507098495486 -8971326327904961007 Overlap Peak optimal -5012934507098495486->-8971326327904961007 -3055728140152662783 Overlap reproducibility -5012934507098495486->-3055728140152662783 -8589425155601509595 IDR Peak optimal 8165638549606577175->-8589425155601509595 2151673909098375064 IDR reproducibility 8165638549606577175->2151673909098375064 -6864763892462238216 Overlap Peak ppr -8730844681954681220->-6864763892462238216 -6864763892462238216->-5012934507098495486 -8928161450163068512 JSD Plot 7240684492747393638->-8928161450163068512 -9222355755544746043->-8928161450163068512

UCSC browser tracks

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