File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF841LNZ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF841LNZ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF841LNZ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF841LNZ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF841LNZ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF204USM.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF204USM.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF204USM.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF204USM.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF204USM.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF841LNZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF841LNZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF841LNZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF841LNZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.243M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF841LNZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF841LNZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF841LNZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF841LNZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.243M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF204USM.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF204USM.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF204USM.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF204USM.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF204USM.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF204USM.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF204USM.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF204USM.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF841LNZ.crop_101-2bp.nodup.pr1_x_ctl.pooled.243M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF841LNZ.crop_101-2bp.nodup.pr2_x_ctl.pooled.243M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF841LNZ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF841LNZ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF841LNZ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF841LNZ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF841LNZ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF841LNZ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF204USM.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF204USM.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF204USM.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF204USM.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF204USM.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF204USM.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF204USM.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF204USM.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d2ae4d41-f337-44d4-b519-0fbe141cea62/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF841LNZ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/f8243a15-46c9-4e1c-a48b-d145e71fd1ef/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.528M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.528M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF841LNZ.crop_101-2bp.nodup_x_ctl.pooled.243M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4e8dce9a-9ab4-4d89-9b1e-fdc53f021745/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF204USM.crop_101-2bp.nodup_x_ctl.pooled.285M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -3410477022609738809 chip.macs2_signal_track_pooled 8515840275345910760 BW FC -3410477022609738809->8515840275345910760 -4439477899415609022 BW p-val -3410477022609738809->-4439477899415609022 -8257640892536249682 chip.call_peak_pooled -7010026114386819513 Peak (bfilt) -8257640892536249682->-7010026114386819513 -418397771853218960 Peak -8257640892536249682->-418397771853218960 -1139358883304073457 chip.idr_ppr -418397771853218960->-1139358883304073457 480551477990644922 chip.idr -418397771853218960->480551477990644922 -1217791959559704719 chip.overlap -418397771853218960->-1217791959559704719 957359359313795007 chip.overlap_ppr -418397771853218960->957359359313795007 -6156439227927990223 chip.pool_ta 7970749933588148251 TAG-ALIGN -6156439227927990223->7970749933588148251 7970749933588148251->-3410477022609738809 7970749933588148251->-8257640892536249682 7970749933588148251->-1139358883304073457 7970749933588148251->480551477990644922 7970749933588148251->-1217791959559704719 7970749933588148251->957359359313795007 -1368709931014350100 chip.call_peak 3431784364306156996 Peak (bfilt) -1368709931014350100->3431784364306156996 4617563864840167356 Peak -1368709931014350100->4617563864840167356 4617563864840167356->480551477990644922 4617563864840167356->-1217791959559704719 -4143194190438111077 chip.reproducibility_overlap 4617563864840167356->-4143194190438111077 -7692180499084499063 chip.reproducibility_idr 4617563864840167356->-7692180499084499063 7192231571442052473 chip.bam2ta -5394370482347882775 TAG-ALIGN 7192231571442052473->-5394370482347882775 -5394370482347882775->-6156439227927990223 -5394370482347882775->-1368709931014350100 -5967824822912626094 chip.macs2_signal_track -5394370482347882775->-5967824822912626094 -5394370482347882775->-1139358883304073457 -5394370482347882775->-4143194190438111077 -5394370482347882775->-7692180499084499063 -5394370482347882775->957359359313795007 -8361130683683273326 chip.filter -34973031946117738 SAMstats QC -8361130683683273326->-34973031946117738 -1516644786231282578 Filt/deduped BAM -8361130683683273326->-1516644786231282578 5248338216976950256 LibCmplx QC -8361130683683273326->5248338216976950256 -1516644786231282578->7192231571442052473 -7311729544136343376 chip.jsd -1516644786231282578->-7311729544136343376 3646373281554339029 chip.align 2476772674228646466 SAMstats QC 3646373281554339029->2476772674228646466 5686438666986655320 BAM 3646373281554339029->5686438666986655320 5686438666986655320->-8361130683683273326 1925686161414419626 chip.xcor -6122835288486721254 XCOR Plot 1925686161414419626->-6122835288486721254 8446110888852819966 BW FC -5967824822912626094->8446110888852819966 -7676263205366548862 BW p-val -5967824822912626094->-7676263205366548862 -7735827003530310445 FASTQ R1 (1) -7735827003530310445->3646373281554339029 -7735827003530310445->1925686161414419626 1169236726105564406 FASTQ R2 (1) 1169236726105564406->3646373281554339029 3542498197406083628 chip.call_peak -6965929627072618380 Peak (bfilt) 3542498197406083628->-6965929627072618380 7793642225703090172 Peak 3542498197406083628->7793642225703090172 7793642225703090172->480551477990644922 7793642225703090172->-1217791959559704719 7793642225703090172->-4143194190438111077 7793642225703090172->-7692180499084499063 8693956798862773213 chip.bam2ta 6218968579833104219 TAG-ALIGN 8693956798862773213->6218968579833104219 6218968579833104219->-6156439227927990223 6218968579833104219->3542498197406083628 4074562207275654275 chip.macs2_signal_track 6218968579833104219->4074562207275654275 6218968579833104219->-1139358883304073457 6218968579833104219->-4143194190438111077 6218968579833104219->-7692180499084499063 6218968579833104219->957359359313795007 -1862921132743444765 chip.filter 8755002088465377322 SAMstats QC -1862921132743444765->8755002088465377322 1511575648266567335 Filt/deduped BAM -1862921132743444765->1511575648266567335 2445785196574496089 LibCmplx QC -1862921132743444765->2445785196574496089 1511575648266567335->8693956798862773213 1511575648266567335->-7311729544136343376 -7577313857014035534 chip.align -5330229341616687532 SAMstats QC -7577313857014035534->-5330229341616687532 6425934329465355832 BAM -7577313857014035534->6425934329465355832 6425934329465355832->-1862921132743444765 6126609349966353523 chip.xcor -6876640025926866877 XCOR Plot 6126609349966353523->-6876640025926866877 -4755180854916479524 BW FC 4074562207275654275->-4755180854916479524 -2025286947047641019 BW p-val 4074562207275654275->-2025286947047641019 -1749955151677752604 FASTQ R1 (1) -1749955151677752604->-7577313857014035534 -1749955151677752604->6126609349966353523 6494265311510186310 FASTQ R2 (1) 6494265311510186310->-7577313857014035534 8000430287327347205 chip.pool_ta_ctl -5858373761579334159 TAG-ALIGN 8000430287327347205->-5858373761579334159 -5858373761579334159->-3410477022609738809 -5858373761579334159->-8257640892536249682 -5858373761579334159->-1368709931014350100 -5858373761579334159->-5967824822912626094 -5858373761579334159->3542498197406083628 -5858373761579334159->4074562207275654275 -5858373761579334159->-1139358883304073457 -5858373761579334159->-4143194190438111077 -5858373761579334159->-7692180499084499063 -5858373761579334159->957359359313795007 -7887841961227194453 chip.bam2ta_ctl -3242956810061573446 TAG-ALIGN -7887841961227194453->-3242956810061573446 -3242956810061573446->8000430287327347205 7845308453617458856 Filt/deduped BAM 7845308453617458856->-7887841961227194453 7845308453617458856->-7311729544136343376 -1556531267686421725 chip.bam2ta_ctl 9120599218140767464 TAG-ALIGN -1556531267686421725->9120599218140767464 9120599218140767464->8000430287327347205 -699102263610186167 Filt/deduped BAM -699102263610186167->-1556531267686421725 -699102263610186167->-7311729544136343376 3107907139987532613 chip.bam2ta_ctl -717139269027592733 TAG-ALIGN 3107907139987532613->-717139269027592733 -717139269027592733->8000430287327347205 7640936208698685355 Filt/deduped BAM 7640936208698685355->3107907139987532613 7640936208698685355->-7311729544136343376 -7425857362913968681 chip.bam2ta_ctl 7767022694745740896 TAG-ALIGN -7425857362913968681->7767022694745740896 7767022694745740896->8000430287327347205 771543432440076843 Filt/deduped BAM 771543432440076843->-7425857362913968681 771543432440076843->-7311729544136343376 8422609426154016295 chip.bam2ta_ctl 4721644895487061970 TAG-ALIGN 8422609426154016295->4721644895487061970 4721644895487061970->8000430287327347205 8204214377675476944 Filt/deduped BAM 8204214377675476944->8422609426154016295 8204214377675476944->-7311729544136343376 6220101838567181279 chip.bam2ta_ctl 3211092168544080899 TAG-ALIGN 6220101838567181279->3211092168544080899 3211092168544080899->8000430287327347205 9002825098250569884 Filt/deduped BAM 9002825098250569884->6220101838567181279 9002825098250569884->-7311729544136343376 6540280344200958645 chip.bam2ta_ctl 1938149422767372055 TAG-ALIGN 6540280344200958645->1938149422767372055 1938149422767372055->8000430287327347205 -5847068437668807557 Filt/deduped BAM -5847068437668807557->6540280344200958645 -5847068437668807557->-7311729544136343376 5009432800640162846 chip.bam2ta_ctl 6257047485968659305 TAG-ALIGN 5009432800640162846->6257047485968659305 6257047485968659305->8000430287327347205 8868430836035778257 Filt/deduped BAM 8868430836035778257->5009432800640162846 8868430836035778257->-7311729544136343376 2964427779689016406 chip.bam2ta_ctl 7773595794607992298 TAG-ALIGN 2964427779689016406->7773595794607992298 7773595794607992298->8000430287327347205 7366054402024825229 Filt/deduped BAM 7366054402024825229->2964427779689016406 7366054402024825229->-7311729544136343376 1696310032067584215 chip.bam2ta_ctl 4603894708613815098 TAG-ALIGN 1696310032067584215->4603894708613815098 4603894708613815098->8000430287327347205 -692786726023126425 Filt/deduped BAM -692786726023126425->1696310032067584215 -692786726023126425->-7311729544136343376 -2516244778869871468 chip.bam2ta_ctl -869441186243484141 TAG-ALIGN -2516244778869871468->-869441186243484141 -869441186243484141->8000430287327347205 7153767258744181394 Filt/deduped BAM 7153767258744181394->-2516244778869871468 7153767258744181394->-7311729544136343376 -8760125803118691652 chip.bam2ta_ctl 1443521035203677824 TAG-ALIGN -8760125803118691652->1443521035203677824 1443521035203677824->8000430287327347205 543607778514551564 Filt/deduped BAM 543607778514551564->-8760125803118691652 543607778514551564->-7311729544136343376 -5376694235247143842 chip.bam2ta_ctl 7597291351083064751 TAG-ALIGN -5376694235247143842->7597291351083064751 7597291351083064751->8000430287327347205 7850219459993395082 Filt/deduped BAM 7850219459993395082->-5376694235247143842 7850219459993395082->-7311729544136343376 -5038096507740755437 chip.bam2ta_ctl 5543472382214724192 TAG-ALIGN -5038096507740755437->5543472382214724192 5543472382214724192->8000430287327347205 1480591835800312301 Filt/deduped BAM 1480591835800312301->-5038096507740755437 1480591835800312301->-7311729544136343376 5314101752373145264 chip.bam2ta_ctl -8411569799794831811 TAG-ALIGN 5314101752373145264->-8411569799794831811 -8411569799794831811->8000430287327347205 5627607496662417248 Filt/deduped BAM 5627607496662417248->5314101752373145264 5627607496662417248->-7311729544136343376 -6482537340870147878 chip.bam2ta_ctl -6645630147134436481 TAG-ALIGN -6482537340870147878->-6645630147134436481 -6645630147134436481->8000430287327347205 -9128768144421169573 Filt/deduped BAM -9128768144421169573->-6482537340870147878 -9128768144421169573->-7311729544136343376 368998052208454699 chip.bam2ta_ctl 7707009122726641555 TAG-ALIGN 368998052208454699->7707009122726641555 7707009122726641555->8000430287327347205 -7209179503306750445 Filt/deduped BAM -7209179503306750445->368998052208454699 -7209179503306750445->-7311729544136343376 -8450072411509586610 chip.bam2ta_ctl -9138211818016898564 TAG-ALIGN -8450072411509586610->-9138211818016898564 -9138211818016898564->8000430287327347205 -7108485810525060752 Filt/deduped BAM -7108485810525060752->-8450072411509586610 -7108485810525060752->-7311729544136343376 6197655462145083248 chip.bam2ta_ctl 5261230722116412207 TAG-ALIGN 6197655462145083248->5261230722116412207 5261230722116412207->8000430287327347205 -974844902638279662 Filt/deduped BAM -974844902638279662->6197655462145083248 -974844902638279662->-7311729544136343376 4301953094817253124 chip.bam2ta_ctl -4592757943227503755 TAG-ALIGN 4301953094817253124->-4592757943227503755 -4592757943227503755->8000430287327347205 -5835134244347568657 Filt/deduped BAM -5835134244347568657->4301953094817253124 -5835134244347568657->-7311729544136343376 -3063061631222114062 chip.bam2ta_ctl -6976342725145741632 TAG-ALIGN -3063061631222114062->-6976342725145741632 -6976342725145741632->8000430287327347205 8899965146826507607 Filt/deduped BAM 8899965146826507607->-3063061631222114062 8899965146826507607->-7311729544136343376 -2060065873721920639 chip.bam2ta_ctl -5973561662786954484 TAG-ALIGN -2060065873721920639->-5973561662786954484 -5973561662786954484->8000430287327347205 -7640255923619657789 Filt/deduped BAM -7640255923619657789->-2060065873721920639 -7640255923619657789->-7311729544136343376 8991449243725116747 chip.bam2ta_ctl 3261420720439038982 TAG-ALIGN 8991449243725116747->3261420720439038982 3261420720439038982->8000430287327347205 -7617026791431815278 Filt/deduped BAM -7617026791431815278->8991449243725116747 -7617026791431815278->-7311729544136343376 5429819193756057867 chip.bam2ta_ctl 3079817126544636769 TAG-ALIGN 5429819193756057867->3079817126544636769 3079817126544636769->8000430287327347205 117295712234645444 Filt/deduped BAM 117295712234645444->5429819193756057867 117295712234645444->-7311729544136343376 -7176733758608729339 IDR Plot ppr -1139358883304073457->-7176733758608729339 -5416190686852947183 IDR Peak ppr -1139358883304073457->-5416190686852947183 -5416190686852947183->-7692180499084499063 244000684926393260 IDR Plot rep1_vs_rep2 480551477990644922->244000684926393260 -6321493306598993823 IDR NPeak rep1_vs_rep2 480551477990644922->-6321493306598993823 -6321493306598993823->-7692180499084499063 -7483182834877829618 Overlap Peak rep1_vs_rep2 -1217791959559704719->-7483182834877829618 -7483182834877829618->-4143194190438111077 -8596609609660167385 Overlap Peak optimal -4143194190438111077->-8596609609660167385 -7407748284240033131 Overlap reproducibility -4143194190438111077->-7407748284240033131 8373534622734017352 IDR Peak optimal -7692180499084499063->8373534622734017352 2561550778016823842 IDR reproducibility -7692180499084499063->2561550778016823842 379065392217577124 Overlap Peak ppr 957359359313795007->379065392217577124 379065392217577124->-4143194190438111077 -3010001399445856766 JSD Plot -7311729544136343376->-3010001399445856766

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