File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF937ADB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF937ADB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF937ADB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF937ADB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF937ADB.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF569SLS.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF569SLS.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF569SLS.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF569SLS.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF569SLS.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.490M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.490M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.490M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF937ADB.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF937ADB.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF937ADB.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF937ADB.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF937ADB.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF937ADB.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF937ADB.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF937ADB.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF569SLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF569SLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF569SLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF569SLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF569SLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF569SLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF569SLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF569SLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.490M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF937ADB.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF937ADB.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF937ADB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF937ADB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF937ADB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF937ADB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF937ADB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF937ADB.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF569SLS.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF569SLS.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF569SLS.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF569SLS.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF569SLS.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF569SLS.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF569SLS.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/133c1903-0d8c-469b-b730-c7f983a24884/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF569SLS.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/ae6ad4dc-79f2-4210-8d12-8cde1185f94f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF937ADB.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/eff4b0ed-8acd-4706-9eea-f6e692b529b3/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6b9e6ba7-1824-48b1-8e8c-2d2cd8fbce17/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.490M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6b9e6ba7-1824-48b1-8e8c-2d2cd8fbce17/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.490M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6b9e6ba7-1824-48b1-8e8c-2d2cd8fbce17/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6b9e6ba7-1824-48b1-8e8c-2d2cd8fbce17/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF937ADB.crop_101-2bp.nodup_x_ctl.pooled.239M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6b9e6ba7-1824-48b1-8e8c-2d2cd8fbce17/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6b9e6ba7-1824-48b1-8e8c-2d2cd8fbce17/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF569SLS.crop_101-2bp.nodup_x_ctl.pooled.251M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 8158154534783676711 chip.macs2_signal_track_pooled 84597923780761341 BW FC 8158154534783676711->84597923780761341 3420416538956135999 BW p-val 8158154534783676711->3420416538956135999 1394163427791752013 chip.call_peak_pooled 7107518725294835483 Peak (bfilt) 1394163427791752013->7107518725294835483 -5455509894606131422 Peak 1394163427791752013->-5455509894606131422 4582394851944609423 chip.idr_ppr -5455509894606131422->4582394851944609423 -157164129672242317 chip.idr -5455509894606131422->-157164129672242317 -5887819923294885862 chip.overlap -5455509894606131422->-5887819923294885862 3152163798168729791 chip.overlap_ppr -5455509894606131422->3152163798168729791 6850267003451968842 chip.pool_ta 7513132235364774717 TAG-ALIGN 6850267003451968842->7513132235364774717 7513132235364774717->8158154534783676711 7513132235364774717->1394163427791752013 7513132235364774717->4582394851944609423 7513132235364774717->-157164129672242317 7513132235364774717->-5887819923294885862 7513132235364774717->3152163798168729791 3950648249289486766 chip.call_peak 3486218299116098019 Peak (bfilt) 3950648249289486766->3486218299116098019 8530958619088176618 Peak 3950648249289486766->8530958619088176618 8530958619088176618->-157164129672242317 8530958619088176618->-5887819923294885862 -1827440462122267453 chip.reproducibility_overlap 8530958619088176618->-1827440462122267453 5046619665193235260 chip.reproducibility_idr 8530958619088176618->5046619665193235260 941047215518242217 chip.bam2ta 572135077563165722 TAG-ALIGN 941047215518242217->572135077563165722 572135077563165722->6850267003451968842 572135077563165722->3950648249289486766 -8865478535568325218 chip.macs2_signal_track 572135077563165722->-8865478535568325218 572135077563165722->4582394851944609423 572135077563165722->-1827440462122267453 572135077563165722->5046619665193235260 572135077563165722->3152163798168729791 666321997490091795 chip.filter -1877915062948634660 SAMstats QC 666321997490091795->-1877915062948634660 5693030046674318848 Filt/deduped BAM 666321997490091795->5693030046674318848 6770871003896956664 LibCmplx QC 666321997490091795->6770871003896956664 5693030046674318848->941047215518242217 7192483805361915771 chip.jsd 5693030046674318848->7192483805361915771 -3484637190764173586 chip.align 5760493423041418986 SAMstats QC -3484637190764173586->5760493423041418986 -566051172187581117 BAM -3484637190764173586->-566051172187581117 -566051172187581117->666321997490091795 -8723380725548646636 chip.xcor 7309630726258834076 XCOR Plot -8723380725548646636->7309630726258834076 -6441282002697014242 BW FC -8865478535568325218->-6441282002697014242 5628296501448050322 BW p-val -8865478535568325218->5628296501448050322 -5522805958865074559 FASTQ R1 (1) -5522805958865074559->-3484637190764173586 -5522805958865074559->-8723380725548646636 -4365666558660911388 FASTQ R2 (1) -4365666558660911388->-3484637190764173586 -5127319082742708874 chip.call_peak 13342151649607525 Peak (bfilt) -5127319082742708874->13342151649607525 4142125531939292024 Peak -5127319082742708874->4142125531939292024 4142125531939292024->-157164129672242317 4142125531939292024->-5887819923294885862 4142125531939292024->-1827440462122267453 4142125531939292024->5046619665193235260 5157540003679026400 chip.bam2ta 4158807207796579951 TAG-ALIGN 5157540003679026400->4158807207796579951 4158807207796579951->6850267003451968842 4158807207796579951->-5127319082742708874 5697163437912328911 chip.macs2_signal_track 4158807207796579951->5697163437912328911 4158807207796579951->4582394851944609423 4158807207796579951->-1827440462122267453 4158807207796579951->5046619665193235260 4158807207796579951->3152163798168729791 -1365712219928556254 chip.filter 3600974395281318140 SAMstats QC -1365712219928556254->3600974395281318140 8406135571150515805 Filt/deduped BAM -1365712219928556254->8406135571150515805 3557854708492950580 LibCmplx QC -1365712219928556254->3557854708492950580 8406135571150515805->5157540003679026400 8406135571150515805->7192483805361915771 -3772700487071095442 chip.align -1640592935639685207 SAMstats QC -3772700487071095442->-1640592935639685207 -5608953732346687907 BAM -3772700487071095442->-5608953732346687907 -5608953732346687907->-1365712219928556254 -6735167758632959109 chip.xcor -3812871509218975547 XCOR Plot -6735167758632959109->-3812871509218975547 -8562266105350136633 BW FC 5697163437912328911->-8562266105350136633 -8990449541401717739 BW p-val 5697163437912328911->-8990449541401717739 -6492020265236739031 FASTQ R1 (1) -6492020265236739031->-3772700487071095442 -6492020265236739031->-6735167758632959109 -5208108090178517426 FASTQ R2 (1) -5208108090178517426->-3772700487071095442 7553665004545980129 chip.pool_ta_ctl -3233425704143692004 TAG-ALIGN 7553665004545980129->-3233425704143692004 -3233425704143692004->8158154534783676711 -3233425704143692004->1394163427791752013 -3233425704143692004->3950648249289486766 -3233425704143692004->-8865478535568325218 -3233425704143692004->-5127319082742708874 -3233425704143692004->5697163437912328911 -3233425704143692004->4582394851944609423 -3233425704143692004->-1827440462122267453 -3233425704143692004->5046619665193235260 -3233425704143692004->3152163798168729791 -8110467773825262858 chip.bam2ta_ctl 6757875760084104265 TAG-ALIGN -8110467773825262858->6757875760084104265 6757875760084104265->7553665004545980129 5828691613252795533 Filt/deduped BAM 5828691613252795533->-8110467773825262858 5828691613252795533->7192483805361915771 3541989891302428869 chip.bam2ta_ctl -5359447062538741886 TAG-ALIGN 3541989891302428869->-5359447062538741886 -5359447062538741886->7553665004545980129 4516714764550217032 Filt/deduped BAM 4516714764550217032->3541989891302428869 4516714764550217032->7192483805361915771 -5534064839239128711 chip.bam2ta_ctl -6850291872814375346 TAG-ALIGN -5534064839239128711->-6850291872814375346 -6850291872814375346->7553665004545980129 4757584359139907085 Filt/deduped BAM 4757584359139907085->-5534064839239128711 4757584359139907085->7192483805361915771 4934816173350942646 chip.bam2ta_ctl 4614993220914755634 TAG-ALIGN 4934816173350942646->4614993220914755634 4614993220914755634->7553665004545980129 8606517209950819265 Filt/deduped BAM 8606517209950819265->4934816173350942646 8606517209950819265->7192483805361915771 -2169282168574582375 chip.bam2ta_ctl -1870484194453287339 TAG-ALIGN -2169282168574582375->-1870484194453287339 -1870484194453287339->7553665004545980129 4967419035390162166 Filt/deduped BAM 4967419035390162166->-2169282168574582375 4967419035390162166->7192483805361915771 -8671173891306678229 chip.bam2ta_ctl 2047595931624872653 TAG-ALIGN -8671173891306678229->2047595931624872653 2047595931624872653->7553665004545980129 -5724963106476269589 Filt/deduped BAM -5724963106476269589->-8671173891306678229 -5724963106476269589->7192483805361915771 2759170708702349900 chip.bam2ta_ctl 841783493208475029 TAG-ALIGN 2759170708702349900->841783493208475029 841783493208475029->7553665004545980129 -3593405798949821711 Filt/deduped BAM -3593405798949821711->2759170708702349900 -3593405798949821711->7192483805361915771 2485747597197278031 chip.bam2ta_ctl 4482717649811183545 TAG-ALIGN 2485747597197278031->4482717649811183545 4482717649811183545->7553665004545980129 -677409514493799759 Filt/deduped BAM -677409514493799759->2485747597197278031 -677409514493799759->7192483805361915771 2888350982719981536 chip.bam2ta_ctl -1435660038226307768 TAG-ALIGN 2888350982719981536->-1435660038226307768 -1435660038226307768->7553665004545980129 -8728804067856063836 Filt/deduped BAM -8728804067856063836->2888350982719981536 -8728804067856063836->7192483805361915771 -7533340927594033248 chip.bam2ta_ctl -8396762891030590197 TAG-ALIGN -7533340927594033248->-8396762891030590197 -8396762891030590197->7553665004545980129 6775475646115247978 Filt/deduped BAM 6775475646115247978->-7533340927594033248 6775475646115247978->7192483805361915771 -3776280408553438260 chip.bam2ta_ctl -8248299236066821983 TAG-ALIGN -3776280408553438260->-8248299236066821983 -8248299236066821983->7553665004545980129 6479091257242721273 Filt/deduped BAM 6479091257242721273->-3776280408553438260 6479091257242721273->7192483805361915771 -8586018004986073557 chip.bam2ta_ctl 7018458370037941879 TAG-ALIGN -8586018004986073557->7018458370037941879 7018458370037941879->7553665004545980129 -1003701527322211217 Filt/deduped BAM -1003701527322211217->-8586018004986073557 -1003701527322211217->7192483805361915771 6397847140134154150 chip.bam2ta_ctl -4499400921189544527 TAG-ALIGN 6397847140134154150->-4499400921189544527 -4499400921189544527->7553665004545980129 -416752614345652063 Filt/deduped BAM -416752614345652063->6397847140134154150 -416752614345652063->7192483805361915771 -2094173533417912699 chip.bam2ta_ctl 2106201018645652846 TAG-ALIGN -2094173533417912699->2106201018645652846 2106201018645652846->7553665004545980129 -332768325801444056 Filt/deduped BAM -332768325801444056->-2094173533417912699 -332768325801444056->7192483805361915771 -7484899370450298926 chip.bam2ta_ctl 8107157960269312074 TAG-ALIGN -7484899370450298926->8107157960269312074 8107157960269312074->7553665004545980129 -502501262279248918 Filt/deduped BAM -502501262279248918->-7484899370450298926 -502501262279248918->7192483805361915771 1781236206676845859 chip.bam2ta_ctl 8244290436575022640 TAG-ALIGN 1781236206676845859->8244290436575022640 8244290436575022640->7553665004545980129 2522069922482006542 Filt/deduped BAM 2522069922482006542->1781236206676845859 2522069922482006542->7192483805361915771 3274287794190542197 chip.bam2ta_ctl 2232608797391390571 TAG-ALIGN 3274287794190542197->2232608797391390571 2232608797391390571->7553665004545980129 -5451860066619116340 Filt/deduped BAM -5451860066619116340->3274287794190542197 -5451860066619116340->7192483805361915771 1757884954191093463 chip.bam2ta_ctl -946745190226513922 TAG-ALIGN 1757884954191093463->-946745190226513922 -946745190226513922->7553665004545980129 439890530079687370 Filt/deduped BAM 439890530079687370->1757884954191093463 439890530079687370->7192483805361915771 -9002375483297502025 chip.bam2ta_ctl -4330075081038992417 TAG-ALIGN -9002375483297502025->-4330075081038992417 -4330075081038992417->7553665004545980129 2434042638891980064 Filt/deduped BAM 2434042638891980064->-9002375483297502025 2434042638891980064->7192483805361915771 -1229179917156376355 chip.bam2ta_ctl 6657669626818918943 TAG-ALIGN -1229179917156376355->6657669626818918943 6657669626818918943->7553665004545980129 -5554937393440804199 Filt/deduped BAM -5554937393440804199->-1229179917156376355 -5554937393440804199->7192483805361915771 2688654865729785188 chip.bam2ta_ctl -1351315872027930851 TAG-ALIGN 2688654865729785188->-1351315872027930851 -1351315872027930851->7553665004545980129 -1081115563524235381 Filt/deduped BAM -1081115563524235381->2688654865729785188 -1081115563524235381->7192483805361915771 8789146831654367850 chip.bam2ta_ctl 7071336737053553578 TAG-ALIGN 8789146831654367850->7071336737053553578 7071336737053553578->7553665004545980129 -8057331816448130341 Filt/deduped BAM -8057331816448130341->8789146831654367850 -8057331816448130341->7192483805361915771 6403411693419988363 chip.bam2ta_ctl 8789799722955411398 TAG-ALIGN 6403411693419988363->8789799722955411398 8789799722955411398->7553665004545980129 2900565074200560931 Filt/deduped BAM 2900565074200560931->6403411693419988363 2900565074200560931->7192483805361915771 -3820930268018295427 chip.bam2ta_ctl -9153052094787583490 TAG-ALIGN -3820930268018295427->-9153052094787583490 -9153052094787583490->7553665004545980129 1591131477412285446 Filt/deduped BAM 1591131477412285446->-3820930268018295427 1591131477412285446->7192483805361915771 -3620665806362518965 IDR Plot ppr 4582394851944609423->-3620665806362518965 7400415293016919714 IDR Peak ppr 4582394851944609423->7400415293016919714 7400415293016919714->5046619665193235260 -5453623945145034168 IDR Plot rep1_vs_rep2 -157164129672242317->-5453623945145034168 -4259115133088278035 IDR NPeak rep1_vs_rep2 -157164129672242317->-4259115133088278035 -4259115133088278035->5046619665193235260 -6595358852507889496 Overlap Peak rep1_vs_rep2 -5887819923294885862->-6595358852507889496 -6595358852507889496->-1827440462122267453 -2647837576960271229 Overlap Peak optimal -1827440462122267453->-2647837576960271229 -195337663370730109 Overlap reproducibility -1827440462122267453->-195337663370730109 1917471215250974606 IDR Peak optimal 5046619665193235260->1917471215250974606 -1546020828414493277 IDR reproducibility 5046619665193235260->-1546020828414493277 3990384833488111242 Overlap Peak ppr 3152163798168729791->3990384833488111242 3990384833488111242->-1827440462122267453 -1101000696130283189 JSD Plot 7192483805361915771->-1101000696130283189

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