File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF785LEU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF785LEU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF785LEU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF785LEU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785LEU.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF497UCW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF497UCW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF497UCW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF497UCW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF497UCW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.489M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.489M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.489M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.489M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.489M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.489M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.489M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF785LEU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF785LEU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF785LEU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF785LEU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF785LEU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF785LEU.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF497UCW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF497UCW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF497UCW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF497UCW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF497UCW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF497UCW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF785LEU.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.489M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.489M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 8399468456782796200 chip.macs2_signal_track_pooled 5776425126487895786 BW FC 8399468456782796200->5776425126487895786 5548534515932493092 BW p-val 8399468456782796200->5548534515932493092 -2546122794101102161 chip.call_peak_pooled -7745410001886114096 Peak (bfilt) -2546122794101102161->-7745410001886114096 8133117398641693763 Peak -2546122794101102161->8133117398641693763 -5654158640811196710 chip.idr_ppr 8133117398641693763->-5654158640811196710 4082438399795407899 chip.idr 8133117398641693763->4082438399795407899 6927695542358906557 chip.overlap 8133117398641693763->6927695542358906557 -289095261176670383 chip.overlap_ppr 8133117398641693763->-289095261176670383 1416679971008500044 chip.pool_ta -3169848829690143313 TAG-ALIGN 1416679971008500044->-3169848829690143313 -3169848829690143313->8399468456782796200 -3169848829690143313->-2546122794101102161 -3169848829690143313->-5654158640811196710 -3169848829690143313->4082438399795407899 -3169848829690143313->6927695542358906557 -3169848829690143313->-289095261176670383 -6482556816944114209 chip.call_peak 5272421195787596190 Peak (bfilt) -6482556816944114209->5272421195787596190 -7886118416704109902 Peak -6482556816944114209->-7886118416704109902 -7886118416704109902->4082438399795407899 -7886118416704109902->6927695542358906557 2040133854093012123 chip.reproducibility_overlap -7886118416704109902->2040133854093012123 5635520135832618594 chip.reproducibility_idr -7886118416704109902->5635520135832618594 3301267574896973513 chip.bam2ta -2952186170225351470 TAG-ALIGN 3301267574896973513->-2952186170225351470 -2952186170225351470->1416679971008500044 -2952186170225351470->-6482556816944114209 6246281214123396777 chip.macs2_signal_track -2952186170225351470->6246281214123396777 -2952186170225351470->-5654158640811196710 -2952186170225351470->2040133854093012123 -2952186170225351470->5635520135832618594 -2952186170225351470->-289095261176670383 -3752974729469769302 chip.filter 3276980862610258184 SAMstats QC -3752974729469769302->3276980862610258184 -593480119637940210 Filt/deduped BAM -3752974729469769302->-593480119637940210 -3897786999803212669 LibCmplx QC -3752974729469769302->-3897786999803212669 -593480119637940210->3301267574896973513 2394629779098839803 chip.jsd -593480119637940210->2394629779098839803 -1033661270623262710 chip.align -7482496810155049428 SAMstats QC -1033661270623262710->-7482496810155049428 -3439663895785762502 BAM -1033661270623262710->-3439663895785762502 -3439663895785762502->-3752974729469769302 -199188104349569188 chip.xcor 4434566615625843749 XCOR Plot -199188104349569188->4434566615625843749 -5505810357838559571 BW FC 6246281214123396777->-5505810357838559571 1566296344940329182 BW p-val 6246281214123396777->1566296344940329182 2309034194848787359 FASTQ R1 (1) 2309034194848787359->-1033661270623262710 2309034194848787359->-199188104349569188 8317548145445417490 FASTQ R2 (1) 8317548145445417490->-1033661270623262710 8356174624353672968 chip.call_peak 1682425535095766548 Peak (bfilt) 8356174624353672968->1682425535095766548 7926118930016654038 Peak 8356174624353672968->7926118930016654038 7926118930016654038->4082438399795407899 7926118930016654038->6927695542358906557 7926118930016654038->2040133854093012123 7926118930016654038->5635520135832618594 -6815944115263245203 chip.bam2ta 1222948762336139407 TAG-ALIGN -6815944115263245203->1222948762336139407 1222948762336139407->1416679971008500044 1222948762336139407->8356174624353672968 -2743760746293872823 chip.macs2_signal_track 1222948762336139407->-2743760746293872823 1222948762336139407->-5654158640811196710 1222948762336139407->2040133854093012123 1222948762336139407->5635520135832618594 1222948762336139407->-289095261176670383 -7660761185478166936 chip.filter -6159448292944357992 SAMstats QC -7660761185478166936->-6159448292944357992 2901028477588229058 Filt/deduped BAM -7660761185478166936->2901028477588229058 4662993287407109089 LibCmplx QC -7660761185478166936->4662993287407109089 2901028477588229058->-6815944115263245203 2901028477588229058->2394629779098839803 -5085896280994141230 chip.align 764679459770998624 SAMstats QC -5085896280994141230->764679459770998624 665379780296057779 BAM -5085896280994141230->665379780296057779 665379780296057779->-7660761185478166936 6519263809594327110 chip.xcor -4495674998084371544 XCOR Plot 6519263809594327110->-4495674998084371544 5486697129113216712 BW FC -2743760746293872823->5486697129113216712 -5918703841660448989 BW p-val -2743760746293872823->-5918703841660448989 -7157867140818687132 FASTQ R1 (1) -7157867140818687132->-5085896280994141230 -7157867140818687132->6519263809594327110 276183893316951525 FASTQ R2 (1) 276183893316951525->-5085896280994141230 5834468123462415309 chip.pool_ta_ctl -7361889703054215731 TAG-ALIGN 5834468123462415309->-7361889703054215731 -7361889703054215731->8399468456782796200 -7361889703054215731->-2546122794101102161 -7361889703054215731->-6482556816944114209 -7361889703054215731->6246281214123396777 -7361889703054215731->8356174624353672968 -7361889703054215731->-2743760746293872823 -7361889703054215731->-5654158640811196710 -7361889703054215731->2040133854093012123 -7361889703054215731->5635520135832618594 -7361889703054215731->-289095261176670383 6625604623751568564 chip.bam2ta_ctl 5795805392865969688 TAG-ALIGN 6625604623751568564->5795805392865969688 5795805392865969688->5834468123462415309 -1497681250566434579 Filt/deduped BAM -1497681250566434579->6625604623751568564 -1497681250566434579->2394629779098839803 5303544294297906624 chip.bam2ta_ctl -6248503156495973930 TAG-ALIGN 5303544294297906624->-6248503156495973930 -6248503156495973930->5834468123462415309 -6569243789618333256 Filt/deduped BAM -6569243789618333256->5303544294297906624 -6569243789618333256->2394629779098839803 2243848948740409697 chip.bam2ta_ctl -5052125408838974017 TAG-ALIGN 2243848948740409697->-5052125408838974017 -5052125408838974017->5834468123462415309 7563673819035555551 Filt/deduped BAM 7563673819035555551->2243848948740409697 7563673819035555551->2394629779098839803 -4915974937777152634 chip.bam2ta_ctl -5961517705722151273 TAG-ALIGN -4915974937777152634->-5961517705722151273 -5961517705722151273->5834468123462415309 -2615674072002648269 Filt/deduped BAM -2615674072002648269->-4915974937777152634 -2615674072002648269->2394629779098839803 3176598975672403728 chip.bam2ta_ctl 1412043668806625436 TAG-ALIGN 3176598975672403728->1412043668806625436 1412043668806625436->5834468123462415309 -1750146491375236071 Filt/deduped BAM -1750146491375236071->3176598975672403728 -1750146491375236071->2394629779098839803 -3354509373257457956 chip.bam2ta_ctl -3846540806654205367 TAG-ALIGN -3354509373257457956->-3846540806654205367 -3846540806654205367->5834468123462415309 -6370046898114791175 Filt/deduped BAM -6370046898114791175->-3354509373257457956 -6370046898114791175->2394629779098839803 8155741988155214996 chip.bam2ta_ctl -7051223193712734248 TAG-ALIGN 8155741988155214996->-7051223193712734248 -7051223193712734248->5834468123462415309 -3122217708776458393 Filt/deduped BAM -3122217708776458393->8155741988155214996 -3122217708776458393->2394629779098839803 -8329992800840043580 chip.bam2ta_ctl -1734050777213606522 TAG-ALIGN -8329992800840043580->-1734050777213606522 -1734050777213606522->5834468123462415309 8714233984043082250 Filt/deduped BAM 8714233984043082250->-8329992800840043580 8714233984043082250->2394629779098839803 2493440791597103096 chip.bam2ta_ctl -4681942297699648059 TAG-ALIGN 2493440791597103096->-4681942297699648059 -4681942297699648059->5834468123462415309 -2182819739993511958 Filt/deduped BAM -2182819739993511958->2493440791597103096 -2182819739993511958->2394629779098839803 1219230538194970920 chip.bam2ta_ctl -8128660443287833834 TAG-ALIGN 1219230538194970920->-8128660443287833834 -8128660443287833834->5834468123462415309 7208452222936204360 Filt/deduped BAM 7208452222936204360->1219230538194970920 7208452222936204360->2394629779098839803 -6713245953406018674 chip.bam2ta_ctl 7329459340367833179 TAG-ALIGN -6713245953406018674->7329459340367833179 7329459340367833179->5834468123462415309 -4586909828932848716 Filt/deduped BAM -4586909828932848716->-6713245953406018674 -4586909828932848716->2394629779098839803 5412787582858552450 chip.bam2ta_ctl 3731151359848538766 TAG-ALIGN 5412787582858552450->3731151359848538766 3731151359848538766->5834468123462415309 -1644162785818610648 Filt/deduped BAM -1644162785818610648->5412787582858552450 -1644162785818610648->2394629779098839803 5230083925953407069 chip.bam2ta_ctl 7698377056107292097 TAG-ALIGN 5230083925953407069->7698377056107292097 7698377056107292097->5834468123462415309 -4386812583035737665 Filt/deduped BAM -4386812583035737665->5230083925953407069 -4386812583035737665->2394629779098839803 3224304507375350017 chip.bam2ta_ctl -7047635198632859806 TAG-ALIGN 3224304507375350017->-7047635198632859806 -7047635198632859806->5834468123462415309 431262822510648901 Filt/deduped BAM 431262822510648901->3224304507375350017 431262822510648901->2394629779098839803 5448926115132493411 chip.bam2ta_ctl -3667287905234686462 TAG-ALIGN 5448926115132493411->-3667287905234686462 -3667287905234686462->5834468123462415309 8787428595743933834 Filt/deduped BAM 8787428595743933834->5448926115132493411 8787428595743933834->2394629779098839803 411909736188689645 chip.bam2ta_ctl 4721271605275433852 TAG-ALIGN 411909736188689645->4721271605275433852 4721271605275433852->5834468123462415309 -5667966278762942767 Filt/deduped BAM -5667966278762942767->411909736188689645 -5667966278762942767->2394629779098839803 6177091315391708156 chip.bam2ta_ctl -4959052845120948086 TAG-ALIGN 6177091315391708156->-4959052845120948086 -4959052845120948086->5834468123462415309 -3851822482815236049 Filt/deduped BAM -3851822482815236049->6177091315391708156 -3851822482815236049->2394629779098839803 -1844925733546706077 chip.bam2ta_ctl 5968709261198907026 TAG-ALIGN -1844925733546706077->5968709261198907026 5968709261198907026->5834468123462415309 -220969223574463421 Filt/deduped BAM -220969223574463421->-1844925733546706077 -220969223574463421->2394629779098839803 -4833030197462311047 chip.bam2ta_ctl -5598242974100356340 TAG-ALIGN -4833030197462311047->-5598242974100356340 -5598242974100356340->5834468123462415309 7354172466240166386 Filt/deduped BAM 7354172466240166386->-4833030197462311047 7354172466240166386->2394629779098839803 2568830297304350899 chip.bam2ta_ctl 7561946571151249654 TAG-ALIGN 2568830297304350899->7561946571151249654 7561946571151249654->5834468123462415309 -7031193062066808735 Filt/deduped BAM -7031193062066808735->2568830297304350899 -7031193062066808735->2394629779098839803 -3973755801091229052 chip.bam2ta_ctl -1270085720553040466 TAG-ALIGN -3973755801091229052->-1270085720553040466 -1270085720553040466->5834468123462415309 -8697051106693895217 Filt/deduped BAM -8697051106693895217->-3973755801091229052 -8697051106693895217->2394629779098839803 9087508014963510539 chip.bam2ta_ctl -3593136829634046832 TAG-ALIGN 9087508014963510539->-3593136829634046832 -3593136829634046832->5834468123462415309 -744964277220530403 Filt/deduped BAM -744964277220530403->9087508014963510539 -744964277220530403->2394629779098839803 -676799466433694360 chip.bam2ta_ctl -6794551569185277257 TAG-ALIGN -676799466433694360->-6794551569185277257 -6794551569185277257->5834468123462415309 6608801190810042130 Filt/deduped BAM 6608801190810042130->-676799466433694360 6608801190810042130->2394629779098839803 791248297529093376 chip.bam2ta_ctl 219301956425860531 TAG-ALIGN 791248297529093376->219301956425860531 219301956425860531->5834468123462415309 -739190727649441903 Filt/deduped BAM -739190727649441903->791248297529093376 -739190727649441903->2394629779098839803 6272987635431606084 IDR Plot ppr -5654158640811196710->6272987635431606084 -8214770201390047390 IDR Peak ppr -5654158640811196710->-8214770201390047390 -8214770201390047390->5635520135832618594 -79573638453336209 IDR Plot rep1_vs_rep2 4082438399795407899->-79573638453336209 693373168946016859 IDR NPeak rep1_vs_rep2 4082438399795407899->693373168946016859 693373168946016859->5635520135832618594 7247125738669999859 Overlap Peak rep1_vs_rep2 6927695542358906557->7247125738669999859 7247125738669999859->2040133854093012123 -2863140446509757815 Overlap Peak optimal 2040133854093012123->-2863140446509757815 -8564718015368682874 Overlap reproducibility 2040133854093012123->-8564718015368682874 -8713188281355023882 IDR Peak optimal 5635520135832618594->-8713188281355023882 -6407205165768536870 IDR reproducibility 5635520135832618594->-6407205165768536870 4298181625333801562 Overlap Peak ppr -289095261176670383->4298181625333801562 4298181625333801562->2040133854093012123 1285992621638336666 JSD Plot 2394629779098839803->1285992621638336666

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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