File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF785LEU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF785LEU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF785LEU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF785LEU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785LEU.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF497UCW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF497UCW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF497UCW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF497UCW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF497UCW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.489M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.489M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.489M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.489M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF785LEU.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF785LEU.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF785LEU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF785LEU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF785LEU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF785LEU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF785LEU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF785LEU.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF497UCW.crop_101-2bp.nodup.pr1_x_ctl.pooled.249M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF497UCW.crop_101-2bp.nodup.pr2_x_ctl.pooled.249M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF497UCW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF497UCW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF497UCW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF497UCW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF497UCW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF497UCW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF785LEU.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/9c31193a-a4d4-4e36-900c-914a823617d4/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.489M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.489M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF785LEU.crop_101-2bp.nodup_x_ctl.pooled.239M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/71377289-5fba-4680-977f-165497a6a562/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF497UCW.crop_101-2bp.nodup_x_ctl.pooled.249M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3405932642161179550 chip.macs2_signal_track_pooled 6880661544772585706 BW FC 3405932642161179550->6880661544772585706 4712339887170148160 BW p-val 3405932642161179550->4712339887170148160 -5770405094572072451 chip.call_peak_pooled -2180106395050643908 Peak (bfilt) -5770405094572072451->-2180106395050643908 -3047402934145268701 Peak -5770405094572072451->-3047402934145268701 6505244876573102647 chip.idr_ppr -3047402934145268701->6505244876573102647 5445897249579125083 chip.idr -3047402934145268701->5445897249579125083 -83155796101403738 chip.overlap -3047402934145268701->-83155796101403738 -8787504048585795098 chip.overlap_ppr -3047402934145268701->-8787504048585795098 -5877910381568174433 chip.pool_ta 7803626230379785435 TAG-ALIGN -5877910381568174433->7803626230379785435 7803626230379785435->3405932642161179550 7803626230379785435->-5770405094572072451 7803626230379785435->6505244876573102647 7803626230379785435->5445897249579125083 7803626230379785435->-83155796101403738 7803626230379785435->-8787504048585795098 2217086110944842806 chip.call_peak 193672266687071849 Peak (bfilt) 2217086110944842806->193672266687071849 5559155670625404146 Peak 2217086110944842806->5559155670625404146 5559155670625404146->5445897249579125083 5559155670625404146->-83155796101403738 1011358660207829066 chip.reproducibility_overlap 5559155670625404146->1011358660207829066 5334941887091127346 chip.reproducibility_idr 5559155670625404146->5334941887091127346 6744494606135895596 chip.bam2ta -546862869366790120 TAG-ALIGN 6744494606135895596->-546862869366790120 -546862869366790120->-5877910381568174433 -546862869366790120->2217086110944842806 -6050851379889474555 chip.macs2_signal_track -546862869366790120->-6050851379889474555 -546862869366790120->6505244876573102647 -546862869366790120->1011358660207829066 -546862869366790120->5334941887091127346 -546862869366790120->-8787504048585795098 5242796643925262258 chip.filter 4047957687590724685 SAMstats QC 5242796643925262258->4047957687590724685 7143955133683115604 Filt/deduped BAM 5242796643925262258->7143955133683115604 5767003482784080793 LibCmplx QC 5242796643925262258->5767003482784080793 7143955133683115604->6744494606135895596 7735797499878870323 chip.jsd 7143955133683115604->7735797499878870323 -8712533567202771458 chip.align -806860233851686818 SAMstats QC -8712533567202771458->-806860233851686818 7049454513046573873 BAM -8712533567202771458->7049454513046573873 7049454513046573873->5242796643925262258 -4097370176381897843 chip.xcor 6708993815572514463 XCOR Plot -4097370176381897843->6708993815572514463 4609040216074021744 BW FC -6050851379889474555->4609040216074021744 3945544433293786453 BW p-val -6050851379889474555->3945544433293786453 -5760230749887514153 FASTQ R1 (1) -5760230749887514153->-8712533567202771458 -5760230749887514153->-4097370176381897843 -602597445396971469 FASTQ R2 (1) -602597445396971469->-8712533567202771458 4599241784515597406 chip.call_peak 1495379314265521949 Peak (bfilt) 4599241784515597406->1495379314265521949 8342241234509073212 Peak 4599241784515597406->8342241234509073212 8342241234509073212->5445897249579125083 8342241234509073212->-83155796101403738 8342241234509073212->1011358660207829066 8342241234509073212->5334941887091127346 6972947418517175899 chip.bam2ta -1688144239037828094 TAG-ALIGN 6972947418517175899->-1688144239037828094 -1688144239037828094->-5877910381568174433 -1688144239037828094->4599241784515597406 2474439710148321550 chip.macs2_signal_track -1688144239037828094->2474439710148321550 -1688144239037828094->6505244876573102647 -1688144239037828094->1011358660207829066 -1688144239037828094->5334941887091127346 -1688144239037828094->-8787504048585795098 -8238348046620445655 chip.filter 6302747886658995220 SAMstats QC -8238348046620445655->6302747886658995220 40976470911887970 Filt/deduped BAM -8238348046620445655->40976470911887970 -1501066382344233249 LibCmplx QC -8238348046620445655->-1501066382344233249 40976470911887970->6972947418517175899 40976470911887970->7735797499878870323 4628943617732753458 chip.align 5724363002100899383 SAMstats QC 4628943617732753458->5724363002100899383 4112694593873923795 BAM 4628943617732753458->4112694593873923795 4112694593873923795->-8238348046620445655 1950015646771164448 chip.xcor -5762044926515974311 XCOR Plot 1950015646771164448->-5762044926515974311 6488001616545234644 BW FC 2474439710148321550->6488001616545234644 -8230032406848102294 BW p-val 2474439710148321550->-8230032406848102294 -2456412060742733168 FASTQ R1 (1) -2456412060742733168->4628943617732753458 -2456412060742733168->1950015646771164448 -7412593145009991015 FASTQ R2 (1) -7412593145009991015->4628943617732753458 5347266268913444155 chip.pool_ta_ctl -8490417280971614971 TAG-ALIGN 5347266268913444155->-8490417280971614971 -8490417280971614971->3405932642161179550 -8490417280971614971->-5770405094572072451 -8490417280971614971->2217086110944842806 -8490417280971614971->-6050851379889474555 -8490417280971614971->4599241784515597406 -8490417280971614971->2474439710148321550 -8490417280971614971->6505244876573102647 -8490417280971614971->1011358660207829066 -8490417280971614971->5334941887091127346 -8490417280971614971->-8787504048585795098 2503620044357381965 chip.bam2ta_ctl -5785168190449465318 TAG-ALIGN 2503620044357381965->-5785168190449465318 -5785168190449465318->5347266268913444155 4552364282039288549 Filt/deduped BAM 4552364282039288549->2503620044357381965 4552364282039288549->7735797499878870323 -1445239096174242362 chip.bam2ta_ctl 8109417106461994088 TAG-ALIGN -1445239096174242362->8109417106461994088 8109417106461994088->5347266268913444155 -5917975606792323513 Filt/deduped BAM -5917975606792323513->-1445239096174242362 -5917975606792323513->7735797499878870323 6208030057981167934 chip.bam2ta_ctl -3566063802689276515 TAG-ALIGN 6208030057981167934->-3566063802689276515 -3566063802689276515->5347266268913444155 6102817719546542461 Filt/deduped BAM 6102817719546542461->6208030057981167934 6102817719546542461->7735797499878870323 8582850027976217422 chip.bam2ta_ctl -4864019942486459173 TAG-ALIGN 8582850027976217422->-4864019942486459173 -4864019942486459173->5347266268913444155 6935650248068902220 Filt/deduped BAM 6935650248068902220->8582850027976217422 6935650248068902220->7735797499878870323 2550432704413090732 chip.bam2ta_ctl -6465264089865917748 TAG-ALIGN 2550432704413090732->-6465264089865917748 -6465264089865917748->5347266268913444155 4018943835347660166 Filt/deduped BAM 4018943835347660166->2550432704413090732 4018943835347660166->7735797499878870323 5006596979678136927 chip.bam2ta_ctl 1507937192533884940 TAG-ALIGN 5006596979678136927->1507937192533884940 1507937192533884940->5347266268913444155 -5414978305859285150 Filt/deduped BAM -5414978305859285150->5006596979678136927 -5414978305859285150->7735797499878870323 7723687051257803187 chip.bam2ta_ctl -5392631082252482099 TAG-ALIGN 7723687051257803187->-5392631082252482099 -5392631082252482099->5347266268913444155 7854324426896214516 Filt/deduped BAM 7854324426896214516->7723687051257803187 7854324426896214516->7735797499878870323 -1202780818366634490 chip.bam2ta_ctl -2743516171471328910 TAG-ALIGN -1202780818366634490->-2743516171471328910 -2743516171471328910->5347266268913444155 -6181596896860204245 Filt/deduped BAM -6181596896860204245->-1202780818366634490 -6181596896860204245->7735797499878870323 -6374321447554926316 chip.bam2ta_ctl -4873023164978576257 TAG-ALIGN -6374321447554926316->-4873023164978576257 -4873023164978576257->5347266268913444155 6625585488735561579 Filt/deduped BAM 6625585488735561579->-6374321447554926316 6625585488735561579->7735797499878870323 -3397921716102309974 chip.bam2ta_ctl 4003685929373748678 TAG-ALIGN -3397921716102309974->4003685929373748678 4003685929373748678->5347266268913444155 -1964582738328815091 Filt/deduped BAM -1964582738328815091->-3397921716102309974 -1964582738328815091->7735797499878870323 5908538826929941141 chip.bam2ta_ctl 1526455435407784780 TAG-ALIGN 5908538826929941141->1526455435407784780 1526455435407784780->5347266268913444155 3581312466901757273 Filt/deduped BAM 3581312466901757273->5908538826929941141 3581312466901757273->7735797499878870323 4384024129638707621 chip.bam2ta_ctl 1116665280484103529 TAG-ALIGN 4384024129638707621->1116665280484103529 1116665280484103529->5347266268913444155 -331232620745292987 Filt/deduped BAM -331232620745292987->4384024129638707621 -331232620745292987->7735797499878870323 4073887054737413383 chip.bam2ta_ctl 5750230945365816168 TAG-ALIGN 4073887054737413383->5750230945365816168 5750230945365816168->5347266268913444155 -4734306110999310743 Filt/deduped BAM -4734306110999310743->4073887054737413383 -4734306110999310743->7735797499878870323 5028812795806288579 chip.bam2ta_ctl -8369385365343431884 TAG-ALIGN 5028812795806288579->-8369385365343431884 -8369385365343431884->5347266268913444155 6748111903517660462 Filt/deduped BAM 6748111903517660462->5028812795806288579 6748111903517660462->7735797499878870323 -6517000927333401284 chip.bam2ta_ctl -4163239234891379673 TAG-ALIGN -6517000927333401284->-4163239234891379673 -4163239234891379673->5347266268913444155 6897387508628041565 Filt/deduped BAM 6897387508628041565->-6517000927333401284 6897387508628041565->7735797499878870323 -401680983190896125 chip.bam2ta_ctl -3982046510470430885 TAG-ALIGN -401680983190896125->-3982046510470430885 -3982046510470430885->5347266268913444155 -7384122851824509355 Filt/deduped BAM -7384122851824509355->-401680983190896125 -7384122851824509355->7735797499878870323 8315791742254569915 chip.bam2ta_ctl -572784297382625926 TAG-ALIGN 8315791742254569915->-572784297382625926 -572784297382625926->5347266268913444155 5803760896291116275 Filt/deduped BAM 5803760896291116275->8315791742254569915 5803760896291116275->7735797499878870323 5249395751508362313 chip.bam2ta_ctl 4882097186593999536 TAG-ALIGN 5249395751508362313->4882097186593999536 4882097186593999536->5347266268913444155 676275024055835984 Filt/deduped BAM 676275024055835984->5249395751508362313 676275024055835984->7735797499878870323 370897903583462258 chip.bam2ta_ctl -1152977551389977233 TAG-ALIGN 370897903583462258->-1152977551389977233 -1152977551389977233->5347266268913444155 9145114477010266579 Filt/deduped BAM 9145114477010266579->370897903583462258 9145114477010266579->7735797499878870323 -2208333564630857815 chip.bam2ta_ctl 1782575471545901711 TAG-ALIGN -2208333564630857815->1782575471545901711 1782575471545901711->5347266268913444155 -4001664937213702137 Filt/deduped BAM -4001664937213702137->-2208333564630857815 -4001664937213702137->7735797499878870323 5065592783570520308 chip.bam2ta_ctl 5925121877392394785 TAG-ALIGN 5065592783570520308->5925121877392394785 5925121877392394785->5347266268913444155 2657441926290429473 Filt/deduped BAM 2657441926290429473->5065592783570520308 2657441926290429473->7735797499878870323 7927152897758100818 chip.bam2ta_ctl -1028619128851374722 TAG-ALIGN 7927152897758100818->-1028619128851374722 -1028619128851374722->5347266268913444155 1597055105425219977 Filt/deduped BAM 1597055105425219977->7927152897758100818 1597055105425219977->7735797499878870323 305368639780768320 chip.bam2ta_ctl 620373203088946808 TAG-ALIGN 305368639780768320->620373203088946808 620373203088946808->5347266268913444155 -3406749320751611728 Filt/deduped BAM -3406749320751611728->305368639780768320 -3406749320751611728->7735797499878870323 2073855946340066694 chip.bam2ta_ctl 3793590217714728774 TAG-ALIGN 2073855946340066694->3793590217714728774 3793590217714728774->5347266268913444155 2053584745852683599 Filt/deduped BAM 2053584745852683599->2073855946340066694 2053584745852683599->7735797499878870323 -1103165695708303734 IDR Plot ppr 6505244876573102647->-1103165695708303734 4480812832405942774 IDR Peak ppr 6505244876573102647->4480812832405942774 4480812832405942774->5334941887091127346 7256666522210809513 IDR Plot rep1_vs_rep2 5445897249579125083->7256666522210809513 -3979540900766010593 IDR NPeak rep1_vs_rep2 5445897249579125083->-3979540900766010593 -3979540900766010593->5334941887091127346 -8669692319889944412 Overlap Peak rep1_vs_rep2 -83155796101403738->-8669692319889944412 -8669692319889944412->1011358660207829066 -3998899346711322763 Overlap Peak optimal 1011358660207829066->-3998899346711322763 3358761056194046607 Overlap reproducibility 1011358660207829066->3358761056194046607 -7628084172771084510 IDR Peak optimal 5334941887091127346->-7628084172771084510 -8540089773894203936 IDR reproducibility 5334941887091127346->-8540089773894203936 -8883105551934046953 Overlap Peak ppr -8787504048585795098->-8883105551934046953 -8883105551934046953->1011358660207829066 7884402334827658888 JSD Plot 7735797499878870323->7884402334827658888

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