File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF807MLK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF807MLK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF807MLK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF807MLK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF807MLK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF774HWW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF774HWW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF774HWW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF774HWW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF774HWW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.509M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.509M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.509M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.509M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.509M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.509M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.509M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF807MLK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF807MLK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF807MLK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF807MLK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF807MLK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF807MLK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF774HWW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF774HWW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF774HWW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF774HWW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF774HWW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF774HWW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF807MLK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.509M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.509M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2134969886918965783 chip.macs2_signal_track_pooled 3593800906765349759 BW FC 2134969886918965783->3593800906765349759 2768022913773999548 BW p-val 2134969886918965783->2768022913773999548 4487002883083856544 chip.call_peak_pooled -972961311841619856 Peak (bfilt) 4487002883083856544->-972961311841619856 -7322902411673786826 Peak 4487002883083856544->-7322902411673786826 -6444064299411786348 chip.idr_ppr -7322902411673786826->-6444064299411786348 4044207562163713976 chip.idr -7322902411673786826->4044207562163713976 2477676042142861897 chip.overlap -7322902411673786826->2477676042142861897 -8279204870543203454 chip.overlap_ppr -7322902411673786826->-8279204870543203454 9169042766527279730 chip.pool_ta -7766331305010902984 TAG-ALIGN 9169042766527279730->-7766331305010902984 -7766331305010902984->2134969886918965783 -7766331305010902984->4487002883083856544 -7766331305010902984->-6444064299411786348 -7766331305010902984->4044207562163713976 -7766331305010902984->2477676042142861897 -7766331305010902984->-8279204870543203454 1188148360456796611 chip.call_peak -7332938810364933394 Peak (bfilt) 1188148360456796611->-7332938810364933394 8624014854669090569 Peak 1188148360456796611->8624014854669090569 8624014854669090569->4044207562163713976 8624014854669090569->2477676042142861897 -9172270348410476123 chip.reproducibility_overlap 8624014854669090569->-9172270348410476123 -7093804922199761952 chip.reproducibility_idr 8624014854669090569->-7093804922199761952 -1722857302735325204 chip.bam2ta -4987412677873730662 TAG-ALIGN -1722857302735325204->-4987412677873730662 -4987412677873730662->9169042766527279730 -4987412677873730662->1188148360456796611 -5976681699504484988 chip.macs2_signal_track -4987412677873730662->-5976681699504484988 -4987412677873730662->-6444064299411786348 -4987412677873730662->-9172270348410476123 -4987412677873730662->-7093804922199761952 -4987412677873730662->-8279204870543203454 -1159303973067034233 chip.filter 7430166511928314526 SAMstats QC -1159303973067034233->7430166511928314526 -2980773695772711901 Filt/deduped BAM -1159303973067034233->-2980773695772711901 -4429292926401157679 LibCmplx QC -1159303973067034233->-4429292926401157679 -2980773695772711901->-1722857302735325204 -6508303305064371937 chip.jsd -2980773695772711901->-6508303305064371937 2175798964528270364 chip.jsd -2980773695772711901->2175798964528270364 6249980878266865541 chip.align -8179470934728454757 SAMstats QC 6249980878266865541->-8179470934728454757 -3445854491921489936 BAM 6249980878266865541->-3445854491921489936 -3445854491921489936->-1159303973067034233 1719974780732908939 chip.xcor -8757999415602977742 XCOR Plot 1719974780732908939->-8757999415602977742 7020456307881167003 BW FC -5976681699504484988->7020456307881167003 -951614924077642095 BW p-val -5976681699504484988->-951614924077642095 6221223508890947503 FASTQ R1 (1) 6221223508890947503->6249980878266865541 6221223508890947503->1719974780732908939 372821814009063484 FASTQ R2 (1) 372821814009063484->6249980878266865541 -8678670814558192474 chip.call_peak 1259138740300218396 Peak (bfilt) -8678670814558192474->1259138740300218396 -5699166617067861044 Peak -8678670814558192474->-5699166617067861044 -5699166617067861044->4044207562163713976 -5699166617067861044->2477676042142861897 -5699166617067861044->-9172270348410476123 -5699166617067861044->-7093804922199761952 -2414536414569139851 chip.bam2ta 2884766655220348988 TAG-ALIGN -2414536414569139851->2884766655220348988 2884766655220348988->9169042766527279730 2884766655220348988->-8678670814558192474 8265140455223866561 chip.macs2_signal_track 2884766655220348988->8265140455223866561 2884766655220348988->-6444064299411786348 2884766655220348988->-9172270348410476123 2884766655220348988->-7093804922199761952 2884766655220348988->-8279204870543203454 -5908974422952772565 chip.filter 3418704062655132207 SAMstats QC -5908974422952772565->3418704062655132207 445931511401019179 Filt/deduped BAM -5908974422952772565->445931511401019179 -3567161698818245316 LibCmplx QC -5908974422952772565->-3567161698818245316 445931511401019179->-2414536414569139851 445931511401019179->-6508303305064371937 445931511401019179->2175798964528270364 -7755065886626880087 chip.align 3699167957903730281 SAMstats QC -7755065886626880087->3699167957903730281 -687341538649890045 BAM -7755065886626880087->-687341538649890045 -687341538649890045->-5908974422952772565 3490973438542387238 chip.xcor 8846859424420157244 XCOR Plot 3490973438542387238->8846859424420157244 2670331060088755210 BW FC 8265140455223866561->2670331060088755210 -8810278281260311925 BW p-val 8265140455223866561->-8810278281260311925 -476543278880814716 FASTQ R1 (1) -476543278880814716->-7755065886626880087 -476543278880814716->3490973438542387238 2735145831379400804 FASTQ R2 (1) 2735145831379400804->-7755065886626880087 9063272456016545792 chip.pool_ta_ctl 8820898503104177867 TAG-ALIGN 9063272456016545792->8820898503104177867 8820898503104177867->2134969886918965783 8820898503104177867->4487002883083856544 8820898503104177867->1188148360456796611 8820898503104177867->-5976681699504484988 8820898503104177867->-8678670814558192474 8820898503104177867->8265140455223866561 8820898503104177867->-6444064299411786348 8820898503104177867->-9172270348410476123 8820898503104177867->-7093804922199761952 8820898503104177867->-8279204870543203454 2026981972077427798 chip.bam2ta_ctl -3500839193780939456 TAG-ALIGN 2026981972077427798->-3500839193780939456 -3500839193780939456->9063272456016545792 -5939134381966190681 Filt/deduped BAM -5939134381966190681->2026981972077427798 -5939134381966190681->-6508303305064371937 -5939134381966190681->2175798964528270364 -7859123994372269507 chip.bam2ta_ctl 5814739496120971644 TAG-ALIGN -7859123994372269507->5814739496120971644 5814739496120971644->9063272456016545792 -3518907339352640329 Filt/deduped BAM -3518907339352640329->-7859123994372269507 -3518907339352640329->-6508303305064371937 -3518907339352640329->2175798964528270364 -6973316288415206245 chip.bam2ta_ctl -7314688249491633206 TAG-ALIGN -6973316288415206245->-7314688249491633206 -7314688249491633206->9063272456016545792 -2034719501356575766 Filt/deduped BAM -2034719501356575766->-6973316288415206245 -2034719501356575766->-6508303305064371937 -2034719501356575766->2175798964528270364 1347857992662514649 chip.bam2ta_ctl 8142604421613187164 TAG-ALIGN 1347857992662514649->8142604421613187164 8142604421613187164->9063272456016545792 -853916176980412979 Filt/deduped BAM -853916176980412979->1347857992662514649 -853916176980412979->-6508303305064371937 -853916176980412979->2175798964528270364 8365228418159053173 chip.bam2ta_ctl -154767402799784065 TAG-ALIGN 8365228418159053173->-154767402799784065 -154767402799784065->9063272456016545792 8661589189183572245 Filt/deduped BAM 8661589189183572245->8365228418159053173 8661589189183572245->-6508303305064371937 8661589189183572245->2175798964528270364 -3920930242919365103 chip.bam2ta_ctl -3600575711628738918 TAG-ALIGN -3920930242919365103->-3600575711628738918 -3600575711628738918->9063272456016545792 -6721415555209955303 Filt/deduped BAM -6721415555209955303->-3920930242919365103 -6721415555209955303->-6508303305064371937 -6721415555209955303->2175798964528270364 -801720205235579372 chip.bam2ta_ctl 3173522514145277883 TAG-ALIGN -801720205235579372->3173522514145277883 3173522514145277883->9063272456016545792 7743787237460102246 Filt/deduped BAM 7743787237460102246->-801720205235579372 7743787237460102246->-6508303305064371937 7743787237460102246->2175798964528270364 4356118652520826622 chip.bam2ta_ctl 9147262256307999739 TAG-ALIGN 4356118652520826622->9147262256307999739 9147262256307999739->9063272456016545792 2594833863789207423 Filt/deduped BAM 2594833863789207423->4356118652520826622 2594833863789207423->-6508303305064371937 2594833863789207423->2175798964528270364 -3807634206489055479 chip.bam2ta_ctl 3492914434949944064 TAG-ALIGN -3807634206489055479->3492914434949944064 3492914434949944064->9063272456016545792 8805277520865683632 Filt/deduped BAM 8805277520865683632->-3807634206489055479 8805277520865683632->-6508303305064371937 8805277520865683632->2175798964528270364 -1923957987834718742 chip.bam2ta_ctl -2669787180976912822 TAG-ALIGN -1923957987834718742->-2669787180976912822 -2669787180976912822->9063272456016545792 6565722308344390026 Filt/deduped BAM 6565722308344390026->-1923957987834718742 6565722308344390026->-6508303305064371937 6565722308344390026->2175798964528270364 7261300398367374917 chip.bam2ta_ctl -1361281193667010139 TAG-ALIGN 7261300398367374917->-1361281193667010139 -1361281193667010139->9063272456016545792 3784664357612112325 Filt/deduped BAM 3784664357612112325->7261300398367374917 3784664357612112325->-6508303305064371937 3784664357612112325->2175798964528270364 -7950666515943676263 chip.bam2ta_ctl 8675866606735165268 TAG-ALIGN -7950666515943676263->8675866606735165268 8675866606735165268->9063272456016545792 -3963568208419690099 Filt/deduped BAM -3963568208419690099->-7950666515943676263 -3963568208419690099->-6508303305064371937 -3963568208419690099->2175798964528270364 1819197769774999932 chip.bam2ta_ctl 1711173207034873802 TAG-ALIGN 1819197769774999932->1711173207034873802 1711173207034873802->9063272456016545792 -5000119477030698761 Filt/deduped BAM -5000119477030698761->1819197769774999932 -5000119477030698761->-6508303305064371937 -5000119477030698761->2175798964528270364 -7356268045976469685 chip.bam2ta_ctl 528261284443976859 TAG-ALIGN -7356268045976469685->528261284443976859 528261284443976859->9063272456016545792 1887952302669928884 Filt/deduped BAM 1887952302669928884->-7356268045976469685 1887952302669928884->-6508303305064371937 1887952302669928884->2175798964528270364 -7351306820939851285 chip.bam2ta_ctl -3750414153419099442 TAG-ALIGN -7351306820939851285->-3750414153419099442 -3750414153419099442->9063272456016545792 -8420869548495926438 Filt/deduped BAM -8420869548495926438->-7351306820939851285 -8420869548495926438->-6508303305064371937 -8420869548495926438->2175798964528270364 -3995222840027675306 chip.bam2ta_ctl -352812355236750616 TAG-ALIGN -3995222840027675306->-352812355236750616 -352812355236750616->9063272456016545792 6240028831779631278 Filt/deduped BAM 6240028831779631278->-3995222840027675306 6240028831779631278->-6508303305064371937 6240028831779631278->2175798964528270364 4938745353915764511 chip.bam2ta_ctl 8337747697691856337 TAG-ALIGN 4938745353915764511->8337747697691856337 8337747697691856337->9063272456016545792 -3798540562754116579 Filt/deduped BAM -3798540562754116579->4938745353915764511 -3798540562754116579->-6508303305064371937 -3798540562754116579->2175798964528270364 -5931929039061512740 chip.bam2ta_ctl 7229366591135160349 TAG-ALIGN -5931929039061512740->7229366591135160349 7229366591135160349->9063272456016545792 -261332788025746843 Filt/deduped BAM -261332788025746843->-5931929039061512740 -261332788025746843->-6508303305064371937 -261332788025746843->2175798964528270364 -6762869356718540260 chip.bam2ta_ctl -4473583348508512864 TAG-ALIGN -6762869356718540260->-4473583348508512864 -4473583348508512864->9063272456016545792 3780785197657738399 Filt/deduped BAM 3780785197657738399->-6762869356718540260 3780785197657738399->-6508303305064371937 3780785197657738399->2175798964528270364 -8395692566444930608 chip.bam2ta_ctl 3921611528302080559 TAG-ALIGN -8395692566444930608->3921611528302080559 3921611528302080559->9063272456016545792 5936209687523186133 Filt/deduped BAM 5936209687523186133->-8395692566444930608 5936209687523186133->-6508303305064371937 5936209687523186133->2175798964528270364 2454852795896210353 chip.bam2ta_ctl -7116502169183736014 TAG-ALIGN 2454852795896210353->-7116502169183736014 -7116502169183736014->9063272456016545792 -1488321478105156982 Filt/deduped BAM -1488321478105156982->2454852795896210353 -1488321478105156982->-6508303305064371937 -1488321478105156982->2175798964528270364 -1412495196636835603 chip.bam2ta_ctl 613985506732523692 TAG-ALIGN -1412495196636835603->613985506732523692 613985506732523692->9063272456016545792 -5800961217617491509 Filt/deduped BAM -5800961217617491509->-1412495196636835603 -5800961217617491509->-6508303305064371937 -5800961217617491509->2175798964528270364 5315664784605385612 chip.bam2ta_ctl -802742326340454559 TAG-ALIGN 5315664784605385612->-802742326340454559 -802742326340454559->9063272456016545792 -4593616386201161760 Filt/deduped BAM -4593616386201161760->5315664784605385612 -4593616386201161760->-6508303305064371937 -4593616386201161760->2175798964528270364 -7711663240852391197 chip.bam2ta_ctl 7975735333872493448 TAG-ALIGN -7711663240852391197->7975735333872493448 7975735333872493448->9063272456016545792 -4379857148232896601 Filt/deduped BAM -4379857148232896601->-7711663240852391197 -4379857148232896601->-6508303305064371937 -4379857148232896601->2175798964528270364 3814964873701221654 IDR Plot ppr -6444064299411786348->3814964873701221654 6915359104386739053 IDR Peak ppr -6444064299411786348->6915359104386739053 6915359104386739053->-7093804922199761952 -7222383083938277170 IDR Plot rep1_vs_rep2 4044207562163713976->-7222383083938277170 -4098046756385870667 IDR NPeak rep1_vs_rep2 4044207562163713976->-4098046756385870667 -4098046756385870667->-7093804922199761952 8127855038741409697 Overlap Peak rep1_vs_rep2 2477676042142861897->8127855038741409697 8127855038741409697->-9172270348410476123 -5468522208673316950 Overlap Peak optimal -9172270348410476123->-5468522208673316950 6226623402007917741 Overlap reproducibility -9172270348410476123->6226623402007917741 -5482094076703538135 IDR Peak optimal -7093804922199761952->-5482094076703538135 -3422384988534869805 IDR reproducibility -7093804922199761952->-3422384988534869805 -7577150891220430922 Overlap Peak ppr -8279204870543203454->-7577150891220430922 -7577150891220430922->-9172270348410476123 2674637426162561234 JSD Plot -6508303305064371937->2674637426162561234 2175798964528270364->2674637426162561234

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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