File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF807MLK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF807MLK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF807MLK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF807MLK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF807MLK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF774HWW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF774HWW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF774HWW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF774HWW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF774HWW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.509M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.509M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.509M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.509M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF807MLK.crop_101-2bp.nodup.pr1_x_ctl.pooled.298M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF807MLK.crop_101-2bp.nodup.pr2_x_ctl.pooled.298M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF807MLK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF807MLK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF807MLK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF807MLK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF807MLK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF807MLK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774HWW.crop_101-2bp.nodup.pr1_x_ctl.pooled.211M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774HWW.crop_101-2bp.nodup.pr2_x_ctl.pooled.211M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF774HWW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF774HWW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF774HWW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF774HWW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF774HWW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF774HWW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF807MLK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/182f7fe8-00a6-4b78-9e01-5119b2a2d4fe/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.509M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.509M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF807MLK.crop_101-2bp.nodup_x_ctl.pooled.298M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4b08a91a-a54f-45ec-b646-98bb3dbd5e0f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF774HWW.crop_101-2bp.nodup_x_ctl.pooled.211M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3708552175484548961 chip.macs2_signal_track_pooled -6391082491547426827 BW FC 3708552175484548961->-6391082491547426827 2893229618138250252 BW p-val 3708552175484548961->2893229618138250252 4139977093646532800 chip.call_peak_pooled 7993331065000172691 Peak (bfilt) 4139977093646532800->7993331065000172691 717511814604194977 Peak 4139977093646532800->717511814604194977 -6996077721843830779 chip.idr_ppr 717511814604194977->-6996077721843830779 -7764003877569390842 chip.idr 717511814604194977->-7764003877569390842 -2956730909359339237 chip.overlap 717511814604194977->-2956730909359339237 4174578890107897233 chip.overlap_ppr 717511814604194977->4174578890107897233 -1991024057735283917 chip.pool_ta 7932757793586984139 TAG-ALIGN -1991024057735283917->7932757793586984139 7932757793586984139->3708552175484548961 7932757793586984139->4139977093646532800 7932757793586984139->-6996077721843830779 7932757793586984139->-7764003877569390842 7932757793586984139->-2956730909359339237 7932757793586984139->4174578890107897233 7866219950978301336 chip.call_peak -4901552394244473995 Peak (bfilt) 7866219950978301336->-4901552394244473995 7342375136696246742 Peak 7866219950978301336->7342375136696246742 7342375136696246742->-7764003877569390842 7342375136696246742->-2956730909359339237 7234412955016472275 chip.reproducibility_overlap 7342375136696246742->7234412955016472275 2235071535318976427 chip.reproducibility_idr 7342375136696246742->2235071535318976427 -4500669077273542424 chip.bam2ta 905485510421929161 TAG-ALIGN -4500669077273542424->905485510421929161 905485510421929161->-1991024057735283917 905485510421929161->7866219950978301336 4592572185785467162 chip.macs2_signal_track 905485510421929161->4592572185785467162 905485510421929161->-6996077721843830779 905485510421929161->7234412955016472275 905485510421929161->2235071535318976427 905485510421929161->4174578890107897233 4353443331253858544 chip.filter -3726286204201228404 SAMstats QC 4353443331253858544->-3726286204201228404 1509439977765261414 Filt/deduped BAM 4353443331253858544->1509439977765261414 -7989245932377751954 LibCmplx QC 4353443331253858544->-7989245932377751954 1509439977765261414->-4500669077273542424 -8634893822857996789 chip.jsd 1509439977765261414->-8634893822857996789 -6847970478603042158 chip.align 2643532163697756547 SAMstats QC -6847970478603042158->2643532163697756547 -5236242508696972776 BAM -6847970478603042158->-5236242508696972776 -5236242508696972776->4353443331253858544 6546071848036212107 chip.xcor 534351723602325306 XCOR Plot 6546071848036212107->534351723602325306 -5732750764157377922 BW FC 4592572185785467162->-5732750764157377922 4269212134509380483 BW p-val 4592572185785467162->4269212134509380483 -4229734126016980020 FASTQ R1 (1) -4229734126016980020->-6847970478603042158 -4229734126016980020->6546071848036212107 -1066969562000188932 FASTQ R2 (1) -1066969562000188932->-6847970478603042158 -7723855807200166878 chip.call_peak 8716448796622023173 Peak (bfilt) -7723855807200166878->8716448796622023173 -1737592858750207102 Peak -7723855807200166878->-1737592858750207102 -1737592858750207102->-7764003877569390842 -1737592858750207102->-2956730909359339237 -1737592858750207102->7234412955016472275 -1737592858750207102->2235071535318976427 -1666871078106288869 chip.bam2ta 6706994027725948972 TAG-ALIGN -1666871078106288869->6706994027725948972 6706994027725948972->-1991024057735283917 6706994027725948972->-7723855807200166878 4905380431802588607 chip.macs2_signal_track 6706994027725948972->4905380431802588607 6706994027725948972->-6996077721843830779 6706994027725948972->7234412955016472275 6706994027725948972->2235071535318976427 6706994027725948972->4174578890107897233 6234003607225879648 chip.filter 998800364980314139 SAMstats QC 6234003607225879648->998800364980314139 -838633405004367163 Filt/deduped BAM 6234003607225879648->-838633405004367163 1156166471838644556 LibCmplx QC 6234003607225879648->1156166471838644556 -838633405004367163->-1666871078106288869 -838633405004367163->-8634893822857996789 -7796066818512133982 chip.align 258690957514504591 SAMstats QC -7796066818512133982->258690957514504591 -4210987369002297041 BAM -7796066818512133982->-4210987369002297041 -4210987369002297041->6234003607225879648 -5649052783481760710 chip.xcor 3476677997465131429 XCOR Plot -5649052783481760710->3476677997465131429 -7730198746559666853 BW FC 4905380431802588607->-7730198746559666853 -6650963458232954443 BW p-val 4905380431802588607->-6650963458232954443 -4684950696124326874 FASTQ R1 (1) -4684950696124326874->-7796066818512133982 -4684950696124326874->-5649052783481760710 -2810206170434087731 FASTQ R2 (1) -2810206170434087731->-7796066818512133982 -954732130633214580 chip.pool_ta_ctl 7652542042065689912 TAG-ALIGN -954732130633214580->7652542042065689912 7652542042065689912->3708552175484548961 7652542042065689912->4139977093646532800 7652542042065689912->7866219950978301336 7652542042065689912->4592572185785467162 7652542042065689912->-7723855807200166878 7652542042065689912->4905380431802588607 7652542042065689912->-6996077721843830779 7652542042065689912->7234412955016472275 7652542042065689912->2235071535318976427 7652542042065689912->4174578890107897233 8024193971092127243 chip.bam2ta_ctl 2495981215383461118 TAG-ALIGN 8024193971092127243->2495981215383461118 2495981215383461118->-954732130633214580 -6073155629899578747 Filt/deduped BAM -6073155629899578747->8024193971092127243 -6073155629899578747->-8634893822857996789 -72571894048384492 chip.bam2ta_ctl -6797888500034334555 TAG-ALIGN -72571894048384492->-6797888500034334555 -6797888500034334555->-954732130633214580 -98151228709413348 Filt/deduped BAM -98151228709413348->-72571894048384492 -98151228709413348->-8634893822857996789 1944296824392072970 chip.bam2ta_ctl 4407443963465709301 TAG-ALIGN 1944296824392072970->4407443963465709301 4407443963465709301->-954732130633214580 -5561723900179968957 Filt/deduped BAM -5561723900179968957->1944296824392072970 -5561723900179968957->-8634893822857996789 -8159717645619488029 chip.bam2ta_ctl 3311728489624694420 TAG-ALIGN -8159717645619488029->3311728489624694420 3311728489624694420->-954732130633214580 -1174866066260730346 Filt/deduped BAM -1174866066260730346->-8159717645619488029 -1174866066260730346->-8634893822857996789 -2942483124188628555 chip.bam2ta_ctl 2556499251671670076 TAG-ALIGN -2942483124188628555->2556499251671670076 2556499251671670076->-954732130633214580 -5663027424950294463 Filt/deduped BAM -5663027424950294463->-2942483124188628555 -5663027424950294463->-8634893822857996789 -3780864490638386971 chip.bam2ta_ctl 8419846551089543593 TAG-ALIGN -3780864490638386971->8419846551089543593 8419846551089543593->-954732130633214580 4868463895095211153 Filt/deduped BAM 4868463895095211153->-3780864490638386971 4868463895095211153->-8634893822857996789 536200708911913214 chip.bam2ta_ctl 831294608905433996 TAG-ALIGN 536200708911913214->831294608905433996 831294608905433996->-954732130633214580 -4819698921704428412 Filt/deduped BAM -4819698921704428412->536200708911913214 -4819698921704428412->-8634893822857996789 398713303185876759 chip.bam2ta_ctl -3869310965817929170 TAG-ALIGN 398713303185876759->-3869310965817929170 -3869310965817929170->-954732130633214580 -7422605144378478156 Filt/deduped BAM -7422605144378478156->398713303185876759 -7422605144378478156->-8634893822857996789 1750371568608672890 chip.bam2ta_ctl -7365402992169969701 TAG-ALIGN 1750371568608672890->-7365402992169969701 -7365402992169969701->-954732130633214580 6203403612230359247 Filt/deduped BAM 6203403612230359247->1750371568608672890 6203403612230359247->-8634893822857996789 -8473000419204437078 chip.bam2ta_ctl -3777675063811357092 TAG-ALIGN -8473000419204437078->-3777675063811357092 -3777675063811357092->-954732130633214580 -6502682037473829947 Filt/deduped BAM -6502682037473829947->-8473000419204437078 -6502682037473829947->-8634893822857996789 7682711127487145868 chip.bam2ta_ctl -1069034529189392733 TAG-ALIGN 7682711127487145868->-1069034529189392733 -1069034529189392733->-954732130633214580 243278041362742931 Filt/deduped BAM 243278041362742931->7682711127487145868 243278041362742931->-8634893822857996789 -5317925543446221648 chip.bam2ta_ctl 8988592414306050116 TAG-ALIGN -5317925543446221648->8988592414306050116 8988592414306050116->-954732130633214580 8476742452931660101 Filt/deduped BAM 8476742452931660101->-5317925543446221648 8476742452931660101->-8634893822857996789 1051457550642563940 chip.bam2ta_ctl 1767116320714673519 TAG-ALIGN 1051457550642563940->1767116320714673519 1767116320714673519->-954732130633214580 6281205635709251789 Filt/deduped BAM 6281205635709251789->1051457550642563940 6281205635709251789->-8634893822857996789 -1366278272147646034 chip.bam2ta_ctl 6715065873185039615 TAG-ALIGN -1366278272147646034->6715065873185039615 6715065873185039615->-954732130633214580 4534682270385255560 Filt/deduped BAM 4534682270385255560->-1366278272147646034 4534682270385255560->-8634893822857996789 -3378022789751842134 chip.bam2ta_ctl -6852347740194376422 TAG-ALIGN -3378022789751842134->-6852347740194376422 -6852347740194376422->-954732130633214580 1972966048584561430 Filt/deduped BAM 1972966048584561430->-3378022789751842134 1972966048584561430->-8634893822857996789 -4437393344598511923 chip.bam2ta_ctl -3580296056717920885 TAG-ALIGN -4437393344598511923->-3580296056717920885 -3580296056717920885->-954732130633214580 -2768796895315342727 Filt/deduped BAM -2768796895315342727->-4437393344598511923 -2768796895315342727->-8634893822857996789 -646463070616766227 chip.bam2ta_ctl -6247090715539830804 TAG-ALIGN -646463070616766227->-6247090715539830804 -6247090715539830804->-954732130633214580 6982160939508309829 Filt/deduped BAM 6982160939508309829->-646463070616766227 6982160939508309829->-8634893822857996789 1355397980550465691 chip.bam2ta_ctl 3894940956981157267 TAG-ALIGN 1355397980550465691->3894940956981157267 3894940956981157267->-954732130633214580 8537328781722443533 Filt/deduped BAM 8537328781722443533->1355397980550465691 8537328781722443533->-8634893822857996789 -8767594626115058687 chip.bam2ta_ctl -2408285436312562443 TAG-ALIGN -8767594626115058687->-2408285436312562443 -2408285436312562443->-954732130633214580 8142593016371481312 Filt/deduped BAM 8142593016371481312->-8767594626115058687 8142593016371481312->-8634893822857996789 -2068795260141158221 chip.bam2ta_ctl 4922902268043236487 TAG-ALIGN -2068795260141158221->4922902268043236487 4922902268043236487->-954732130633214580 1733600055927398775 Filt/deduped BAM 1733600055927398775->-2068795260141158221 1733600055927398775->-8634893822857996789 -3664735744567205062 chip.bam2ta_ctl -8120532306868716306 TAG-ALIGN -3664735744567205062->-8120532306868716306 -8120532306868716306->-954732130633214580 -1408802293701726640 Filt/deduped BAM -1408802293701726640->-3664735744567205062 -1408802293701726640->-8634893822857996789 850549352881649628 chip.bam2ta_ctl -2380842199536987695 TAG-ALIGN 850549352881649628->-2380842199536987695 -2380842199536987695->-954732130633214580 -7747049962315919524 Filt/deduped BAM -7747049962315919524->850549352881649628 -7747049962315919524->-8634893822857996789 -4907783215115003807 chip.bam2ta_ctl -2932767819344213283 TAG-ALIGN -4907783215115003807->-2932767819344213283 -2932767819344213283->-954732130633214580 -6861049364372754180 Filt/deduped BAM -6861049364372754180->-4907783215115003807 -6861049364372754180->-8634893822857996789 -3019111311227150226 chip.bam2ta_ctl 7320660728622877146 TAG-ALIGN -3019111311227150226->7320660728622877146 7320660728622877146->-954732130633214580 7256187101007225177 Filt/deduped BAM 7256187101007225177->-3019111311227150226 7256187101007225177->-8634893822857996789 1391228318747478823 IDR Plot ppr -6996077721843830779->1391228318747478823 -4429560609362203046 IDR Peak ppr -6996077721843830779->-4429560609362203046 -4429560609362203046->2235071535318976427 -31343766923903160 IDR Plot rep1_vs_rep2 -7764003877569390842->-31343766923903160 -8220167421354569277 IDR NPeak rep1_vs_rep2 -7764003877569390842->-8220167421354569277 -8220167421354569277->2235071535318976427 7488402054280554887 Overlap Peak rep1_vs_rep2 -2956730909359339237->7488402054280554887 7488402054280554887->7234412955016472275 8561562113385233278 Overlap Peak optimal 7234412955016472275->8561562113385233278 2493765761119456750 Overlap reproducibility 7234412955016472275->2493765761119456750 -7652391247535899563 IDR Peak optimal 2235071535318976427->-7652391247535899563 6927197580512698530 IDR reproducibility 2235071535318976427->6927197580512698530 -675009916602079336 Overlap Peak ppr 4174578890107897233->-675009916602079336 -675009916602079336->7234412955016472275 -8978548845634335970 JSD Plot -8634893822857996789->-8978548845634335970

UCSC browser tracks

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