File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF768RZW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF768RZW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF768RZW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF768RZW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF768RZW.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF952XTB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF952XTB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF952XTB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF952XTB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF952XTB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.457M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.457M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.457M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF768RZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF768RZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF768RZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF768RZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF768RZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF768RZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF768RZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF768RZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF952XTB.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF952XTB.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF952XTB.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF952XTB.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF952XTB.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF952XTB.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF952XTB.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF952XTB.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.457M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF768RZW.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF768RZW.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF768RZW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF768RZW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF768RZW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF768RZW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF768RZW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF768RZW.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF952XTB.crop_101-2bp.nodup.pr1_x_ctl.pooled.259M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF952XTB.crop_101-2bp.nodup.pr2_x_ctl.pooled.259M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF952XTB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF952XTB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF952XTB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF952XTB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF952XTB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF952XTB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF768RZW.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d1bd1219-4905-4b0b-8b47-bc2eac135915/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.457M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.457M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF768RZW.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/004e3406-f8ec-4ca1-bd61-5728409b7674/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF952XTB.crop_101-2bp.nodup_x_ctl.pooled.259M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -6867732522866091870 chip.macs2_signal_track_pooled -6521613365356136231 BW FC -6867732522866091870->-6521613365356136231 -212836518302612449 BW p-val -6867732522866091870->-212836518302612449 -3148682897264533131 chip.call_peak_pooled -213739230673840582 Peak (bfilt) -3148682897264533131->-213739230673840582 -5324180147438605589 Peak -3148682897264533131->-5324180147438605589 -4271313696402574988 chip.idr_ppr -5324180147438605589->-4271313696402574988 -4570437353436384070 chip.idr -5324180147438605589->-4570437353436384070 6064441763531116887 chip.overlap -5324180147438605589->6064441763531116887 -7057990720295657479 chip.overlap_ppr -5324180147438605589->-7057990720295657479 5955621001741815683 chip.pool_ta -3480676923456273749 TAG-ALIGN 5955621001741815683->-3480676923456273749 -3480676923456273749->-6867732522866091870 -3480676923456273749->-3148682897264533131 -3480676923456273749->-4271313696402574988 -3480676923456273749->-4570437353436384070 -3480676923456273749->6064441763531116887 -3480676923456273749->-7057990720295657479 1376359508013012868 chip.call_peak -8629503441228533040 Peak (bfilt) 1376359508013012868->-8629503441228533040 -8039946318503462189 Peak 1376359508013012868->-8039946318503462189 -8039946318503462189->-4570437353436384070 -8039946318503462189->6064441763531116887 7293138768452110210 chip.reproducibility_overlap -8039946318503462189->7293138768452110210 -2293825251225531880 chip.reproducibility_idr -8039946318503462189->-2293825251225531880 -4253808820963721941 chip.bam2ta -3133530722977809942 TAG-ALIGN -4253808820963721941->-3133530722977809942 -3133530722977809942->5955621001741815683 -3133530722977809942->1376359508013012868 -6245788913719551400 chip.macs2_signal_track -3133530722977809942->-6245788913719551400 -3133530722977809942->-4271313696402574988 -3133530722977809942->7293138768452110210 -3133530722977809942->-2293825251225531880 -3133530722977809942->-7057990720295657479 -6536748365666646861 chip.filter 5577515493666518291 SAMstats QC -6536748365666646861->5577515493666518291 -2745627142606647742 Filt/deduped BAM -6536748365666646861->-2745627142606647742 6324276593517279364 LibCmplx QC -6536748365666646861->6324276593517279364 -2745627142606647742->-4253808820963721941 -5782867141846898648 chip.jsd -2745627142606647742->-5782867141846898648 -2958320451757994048 chip.align 4561488032494924255 SAMstats QC -2958320451757994048->4561488032494924255 8895869874013520391 BAM -2958320451757994048->8895869874013520391 8895869874013520391->-6536748365666646861 -5368162185654684799 chip.xcor -2406870493275162126 XCOR Plot -5368162185654684799->-2406870493275162126 5173163847493196863 BW FC -6245788913719551400->5173163847493196863 8468271629359025806 BW p-val -6245788913719551400->8468271629359025806 -8100751543427816315 FASTQ R1 (1) -8100751543427816315->-2958320451757994048 -8100751543427816315->-5368162185654684799 -5692493704223373607 FASTQ R2 (1) -5692493704223373607->-2958320451757994048 7984936550554493226 chip.call_peak 4517739886838235612 Peak (bfilt) 7984936550554493226->4517739886838235612 -5143995797286772485 Peak 7984936550554493226->-5143995797286772485 -5143995797286772485->-4570437353436384070 -5143995797286772485->6064441763531116887 -5143995797286772485->7293138768452110210 -5143995797286772485->-2293825251225531880 -7815463674711910806 chip.bam2ta -7722309789971538013 TAG-ALIGN -7815463674711910806->-7722309789971538013 -7722309789971538013->5955621001741815683 -7722309789971538013->7984936550554493226 -5637870183713514223 chip.macs2_signal_track -7722309789971538013->-5637870183713514223 -7722309789971538013->-4271313696402574988 -7722309789971538013->7293138768452110210 -7722309789971538013->-2293825251225531880 -7722309789971538013->-7057990720295657479 3122749086547849264 chip.filter -1390830700814066767 SAMstats QC 3122749086547849264->-1390830700814066767 5534662566417540427 Filt/deduped BAM 3122749086547849264->5534662566417540427 6733147074735241863 LibCmplx QC 3122749086547849264->6733147074735241863 5534662566417540427->-7815463674711910806 5534662566417540427->-5782867141846898648 2471840890723773971 chip.align -1400240956470194955 SAMstats QC 2471840890723773971->-1400240956470194955 -715927584801912741 BAM 2471840890723773971->-715927584801912741 -715927584801912741->3122749086547849264 4957447902493850991 chip.xcor 1463084555032952997 XCOR Plot 4957447902493850991->1463084555032952997 5668760356189906679 BW FC -5637870183713514223->5668760356189906679 4447351073796807227 BW p-val -5637870183713514223->4447351073796807227 -4422446494888397425 FASTQ R1 (1) -4422446494888397425->2471840890723773971 -4422446494888397425->4957447902493850991 3555050416017391426 FASTQ R2 (1) 3555050416017391426->2471840890723773971 -2430062024720868095 chip.pool_ta_ctl -3671428701769906758 TAG-ALIGN -2430062024720868095->-3671428701769906758 -3671428701769906758->-6867732522866091870 -3671428701769906758->-3148682897264533131 -3671428701769906758->1376359508013012868 -3671428701769906758->-6245788913719551400 -3671428701769906758->7984936550554493226 -3671428701769906758->-5637870183713514223 -3671428701769906758->-4271313696402574988 -3671428701769906758->7293138768452110210 -3671428701769906758->-2293825251225531880 -3671428701769906758->-7057990720295657479 4022361755351960653 chip.bam2ta_ctl 5925793953423803371 TAG-ALIGN 4022361755351960653->5925793953423803371 5925793953423803371->-2430062024720868095 -8188254771695715398 Filt/deduped BAM -8188254771695715398->4022361755351960653 -8188254771695715398->-5782867141846898648 7435469081334405529 chip.bam2ta_ctl -9008824017860558936 TAG-ALIGN 7435469081334405529->-9008824017860558936 -9008824017860558936->-2430062024720868095 5181267142300538064 Filt/deduped BAM 5181267142300538064->7435469081334405529 5181267142300538064->-5782867141846898648 -566787519281091906 chip.bam2ta_ctl -2254901372347158323 TAG-ALIGN -566787519281091906->-2254901372347158323 -2254901372347158323->-2430062024720868095 4309761782083629201 Filt/deduped BAM 4309761782083629201->-566787519281091906 4309761782083629201->-5782867141846898648 1964081166370698568 chip.bam2ta_ctl 7327770150088437304 TAG-ALIGN 1964081166370698568->7327770150088437304 7327770150088437304->-2430062024720868095 -8705476141838166221 Filt/deduped BAM -8705476141838166221->1964081166370698568 -8705476141838166221->-5782867141846898648 134741141647727924 chip.bam2ta_ctl 7345342310457153443 TAG-ALIGN 134741141647727924->7345342310457153443 7345342310457153443->-2430062024720868095 4990367914902050815 Filt/deduped BAM 4990367914902050815->134741141647727924 4990367914902050815->-5782867141846898648 4638038959005019259 chip.bam2ta_ctl -7175231911899442529 TAG-ALIGN 4638038959005019259->-7175231911899442529 -7175231911899442529->-2430062024720868095 5833786595940580471 Filt/deduped BAM 5833786595940580471->4638038959005019259 5833786595940580471->-5782867141846898648 3917453673806086742 chip.bam2ta_ctl 2980745016295901223 TAG-ALIGN 3917453673806086742->2980745016295901223 2980745016295901223->-2430062024720868095 2108936754255333899 Filt/deduped BAM 2108936754255333899->3917453673806086742 2108936754255333899->-5782867141846898648 8973806128968141222 chip.bam2ta_ctl -2265187671816806509 TAG-ALIGN 8973806128968141222->-2265187671816806509 -2265187671816806509->-2430062024720868095 6541775266021262000 Filt/deduped BAM 6541775266021262000->8973806128968141222 6541775266021262000->-5782867141846898648 -7146264739349810699 chip.bam2ta_ctl -1284631866792869396 TAG-ALIGN -7146264739349810699->-1284631866792869396 -1284631866792869396->-2430062024720868095 -5834403686114650149 Filt/deduped BAM -5834403686114650149->-7146264739349810699 -5834403686114650149->-5782867141846898648 8158513520162833242 chip.bam2ta_ctl -3054599515193590749 TAG-ALIGN 8158513520162833242->-3054599515193590749 -3054599515193590749->-2430062024720868095 -4085096125986541142 Filt/deduped BAM -4085096125986541142->8158513520162833242 -4085096125986541142->-5782867141846898648 5128787845824571178 chip.bam2ta_ctl 7883699641134244190 TAG-ALIGN 5128787845824571178->7883699641134244190 7883699641134244190->-2430062024720868095 -1823127685144114260 Filt/deduped BAM -1823127685144114260->5128787845824571178 -1823127685144114260->-5782867141846898648 -4775166845341427852 chip.bam2ta_ctl 6899319841528544032 TAG-ALIGN -4775166845341427852->6899319841528544032 6899319841528544032->-2430062024720868095 -3417271684808682433 Filt/deduped BAM -3417271684808682433->-4775166845341427852 -3417271684808682433->-5782867141846898648 7217661254717678238 chip.bam2ta_ctl 4696479098553591161 TAG-ALIGN 7217661254717678238->4696479098553591161 4696479098553591161->-2430062024720868095 1873271479950993511 Filt/deduped BAM 1873271479950993511->7217661254717678238 1873271479950993511->-5782867141846898648 -272050691768287452 chip.bam2ta_ctl 1080269822101541457 TAG-ALIGN -272050691768287452->1080269822101541457 1080269822101541457->-2430062024720868095 -7114453382587316742 Filt/deduped BAM -7114453382587316742->-272050691768287452 -7114453382587316742->-5782867141846898648 -8053994467117498277 chip.bam2ta_ctl 2175545205422563324 TAG-ALIGN -8053994467117498277->2175545205422563324 2175545205422563324->-2430062024720868095 -4035732339693832921 Filt/deduped BAM -4035732339693832921->-8053994467117498277 -4035732339693832921->-5782867141846898648 5772602736611430622 chip.bam2ta_ctl 39010827154921527 TAG-ALIGN 5772602736611430622->39010827154921527 39010827154921527->-2430062024720868095 -1588939180895030220 Filt/deduped BAM -1588939180895030220->5772602736611430622 -1588939180895030220->-5782867141846898648 8140681359338725280 chip.bam2ta_ctl 921211917268392374 TAG-ALIGN 8140681359338725280->921211917268392374 921211917268392374->-2430062024720868095 747900963651099164 Filt/deduped BAM 747900963651099164->8140681359338725280 747900963651099164->-5782867141846898648 5458662721177339800 chip.bam2ta_ctl 1480281511055741845 TAG-ALIGN 5458662721177339800->1480281511055741845 1480281511055741845->-2430062024720868095 -3231888077048341554 Filt/deduped BAM -3231888077048341554->5458662721177339800 -3231888077048341554->-5782867141846898648 2430056766615258227 chip.bam2ta_ctl -4132406051239805572 TAG-ALIGN 2430056766615258227->-4132406051239805572 -4132406051239805572->-2430062024720868095 3610919109645828211 Filt/deduped BAM 3610919109645828211->2430056766615258227 3610919109645828211->-5782867141846898648 -149631890380794227 chip.bam2ta_ctl -1099287607183567034 TAG-ALIGN -149631890380794227->-1099287607183567034 -1099287607183567034->-2430062024720868095 -4760783764014168640 Filt/deduped BAM -4760783764014168640->-149631890380794227 -4760783764014168640->-5782867141846898648 7254493137891763432 chip.bam2ta_ctl -8612338238209842169 TAG-ALIGN 7254493137891763432->-8612338238209842169 -8612338238209842169->-2430062024720868095 8928075252051261431 Filt/deduped BAM 8928075252051261431->7254493137891763432 8928075252051261431->-5782867141846898648 7067313109048325557 chip.bam2ta_ctl 6453007690633138911 TAG-ALIGN 7067313109048325557->6453007690633138911 6453007690633138911->-2430062024720868095 -4651758379195688959 Filt/deduped BAM -4651758379195688959->7067313109048325557 -4651758379195688959->-5782867141846898648 -8867704050226698901 chip.bam2ta_ctl 3774975925698903117 TAG-ALIGN -8867704050226698901->3774975925698903117 3774975925698903117->-2430062024720868095 5767623450605627248 Filt/deduped BAM 5767623450605627248->-8867704050226698901 5767623450605627248->-5782867141846898648 1733510568798798436 chip.bam2ta_ctl -1452165873220107102 TAG-ALIGN 1733510568798798436->-1452165873220107102 -1452165873220107102->-2430062024720868095 7509782927851277277 Filt/deduped BAM 7509782927851277277->1733510568798798436 7509782927851277277->-5782867141846898648 3251684672107720063 IDR Plot ppr -4271313696402574988->3251684672107720063 402161614525473918 IDR Peak ppr -4271313696402574988->402161614525473918 402161614525473918->-2293825251225531880 -5422383872812141100 IDR Plot rep1_vs_rep2 -4570437353436384070->-5422383872812141100 -3555401724211899286 IDR NPeak rep1_vs_rep2 -4570437353436384070->-3555401724211899286 -3555401724211899286->-2293825251225531880 -4107899779191636372 Overlap Peak rep1_vs_rep2 6064441763531116887->-4107899779191636372 -4107899779191636372->7293138768452110210 -7454806692709392518 Overlap Peak optimal 7293138768452110210->-7454806692709392518 8199828895142150902 Overlap reproducibility 7293138768452110210->8199828895142150902 1819393490117450307 IDR Peak optimal -2293825251225531880->1819393490117450307 6520146647515924658 IDR reproducibility -2293825251225531880->6520146647515924658 2667284513976898370 Overlap Peak ppr -7057990720295657479->2667284513976898370 2667284513976898370->7293138768452110210 1202203333027202367 JSD Plot -5782867141846898648->1202203333027202367

UCSC browser tracks

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