File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF676BSD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF676BSD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF676BSD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF676BSD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF676BSD.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF638IWT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF638IWT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF638IWT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF638IWT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF638IWT.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.566M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.566M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.566M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF676BSD.crop_101-2bp.nodup.pr1_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF676BSD.crop_101-2bp.nodup.pr1_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF676BSD.crop_101-2bp.nodup.pr1_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF676BSD.crop_101-2bp.nodup.pr1_x_ctl.pooled.310M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF676BSD.crop_101-2bp.nodup.pr2_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF676BSD.crop_101-2bp.nodup.pr2_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF676BSD.crop_101-2bp.nodup.pr2_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF676BSD.crop_101-2bp.nodup.pr2_x_ctl.pooled.310M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF638IWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF638IWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF638IWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF638IWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF638IWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF638IWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF638IWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF638IWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.566M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF676BSD.crop_101-2bp.nodup.pr1_x_ctl.pooled.310M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF676BSD.crop_101-2bp.nodup.pr2_x_ctl.pooled.310M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF676BSD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF676BSD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF676BSD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF676BSD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF676BSD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF676BSD.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF638IWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF638IWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF638IWT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF638IWT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF638IWT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF638IWT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF638IWT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF638IWT.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF676BSD.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/b7eeb4ea-922d-4ee7-ad8d-e578740ffdbe/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.566M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.566M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF676BSD.crop_101-2bp.nodup_x_ctl.pooled.310M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/83cfc0d4-9b0d-4eb5-8021-a401c8105efc/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF638IWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -7108964228125038741 chip.macs2_signal_track_pooled 2922469447939647586 BW FC -7108964228125038741->2922469447939647586 -7439844500682239654 BW p-val -7108964228125038741->-7439844500682239654 -7553557959009712518 chip.call_peak_pooled -4419070893175326996 Peak (bfilt) -7553557959009712518->-4419070893175326996 -2050838300749890289 Peak -7553557959009712518->-2050838300749890289 -5036340448517139450 chip.idr_ppr -2050838300749890289->-5036340448517139450 6012538445679026651 chip.idr -2050838300749890289->6012538445679026651 -3144505118154015734 chip.overlap -2050838300749890289->-3144505118154015734 3355139999075981479 chip.overlap_ppr -2050838300749890289->3355139999075981479 2653882978491171275 chip.pool_ta 788041424881822045 TAG-ALIGN 2653882978491171275->788041424881822045 788041424881822045->-7108964228125038741 788041424881822045->-7553557959009712518 788041424881822045->-5036340448517139450 788041424881822045->6012538445679026651 788041424881822045->-3144505118154015734 788041424881822045->3355139999075981479 5146158116944507194 chip.call_peak -1727692478493033564 Peak (bfilt) 5146158116944507194->-1727692478493033564 -2903197121095847321 Peak 5146158116944507194->-2903197121095847321 -2903197121095847321->6012538445679026651 -2903197121095847321->-3144505118154015734 2841717070767780086 chip.reproducibility_overlap -2903197121095847321->2841717070767780086 741422004540664049 chip.reproducibility_idr -2903197121095847321->741422004540664049 4694488301573709796 chip.bam2ta -1190905172836529437 TAG-ALIGN 4694488301573709796->-1190905172836529437 -1190905172836529437->2653882978491171275 -1190905172836529437->5146158116944507194 4649507057107699819 chip.macs2_signal_track -1190905172836529437->4649507057107699819 -1190905172836529437->-5036340448517139450 -1190905172836529437->2841717070767780086 -1190905172836529437->741422004540664049 -1190905172836529437->3355139999075981479 1889463840544627988 chip.filter 5248010278470785440 SAMstats QC 1889463840544627988->5248010278470785440 -8870577896297328233 Filt/deduped BAM 1889463840544627988->-8870577896297328233 2800610599165123024 LibCmplx QC 1889463840544627988->2800610599165123024 -8870577896297328233->4694488301573709796 -547608476781328030 chip.jsd -8870577896297328233->-547608476781328030 -368542836983325649 chip.align 728660362746783310 SAMstats QC -368542836983325649->728660362746783310 -4572300522305115760 BAM -368542836983325649->-4572300522305115760 -4572300522305115760->1889463840544627988 -5933226835209647620 chip.xcor 6432741881960006337 XCOR Plot -5933226835209647620->6432741881960006337 -9191561124014448113 BW FC 4649507057107699819->-9191561124014448113 -1286867212058277847 BW p-val 4649507057107699819->-1286867212058277847 -2810721824216979395 FASTQ R1 (1) -2810721824216979395->-368542836983325649 -2810721824216979395->-5933226835209647620 4401843665282941856 FASTQ R2 (1) 4401843665282941856->-368542836983325649 -2379227434156087437 chip.call_peak -6383278930974565656 Peak (bfilt) -2379227434156087437->-6383278930974565656 -2543525863141781642 Peak -2379227434156087437->-2543525863141781642 -2543525863141781642->6012538445679026651 -2543525863141781642->-3144505118154015734 -2543525863141781642->2841717070767780086 -2543525863141781642->741422004540664049 6713305511828655627 chip.bam2ta 5404426359326603706 TAG-ALIGN 6713305511828655627->5404426359326603706 5404426359326603706->2653882978491171275 5404426359326603706->-2379227434156087437 6681944311777804249 chip.macs2_signal_track 5404426359326603706->6681944311777804249 5404426359326603706->-5036340448517139450 5404426359326603706->2841717070767780086 5404426359326603706->741422004540664049 5404426359326603706->3355139999075981479 -8062224193739996970 chip.filter -2837800712235018085 SAMstats QC -8062224193739996970->-2837800712235018085 3401117591999071388 Filt/deduped BAM -8062224193739996970->3401117591999071388 166651586631136824 LibCmplx QC -8062224193739996970->166651586631136824 3401117591999071388->6713305511828655627 3401117591999071388->-547608476781328030 -885499590990936968 chip.align -8533931871849684111 SAMstats QC -885499590990936968->-8533931871849684111 -4368338227521448839 BAM -885499590990936968->-4368338227521448839 -4368338227521448839->-8062224193739996970 3232919134160508692 chip.xcor -6579879088315152231 XCOR Plot 3232919134160508692->-6579879088315152231 -7341177332866682600 BW FC 6681944311777804249->-7341177332866682600 1540033446932103208 BW p-val 6681944311777804249->1540033446932103208 8132417182002693550 FASTQ R1 (1) 8132417182002693550->-885499590990936968 8132417182002693550->3232919134160508692 3424054339623389180 FASTQ R2 (1) 3424054339623389180->-885499590990936968 -6873029885052718342 chip.pool_ta_ctl 8337442154912337796 TAG-ALIGN -6873029885052718342->8337442154912337796 8337442154912337796->-7108964228125038741 8337442154912337796->-7553557959009712518 8337442154912337796->5146158116944507194 8337442154912337796->4649507057107699819 8337442154912337796->-2379227434156087437 8337442154912337796->6681944311777804249 8337442154912337796->-5036340448517139450 8337442154912337796->2841717070767780086 8337442154912337796->741422004540664049 8337442154912337796->3355139999075981479 -2091488590071723667 chip.bam2ta_ctl 6832347639845340207 TAG-ALIGN -2091488590071723667->6832347639845340207 6832347639845340207->-6873029885052718342 -687251471931736713 Filt/deduped BAM -687251471931736713->-2091488590071723667 -687251471931736713->-547608476781328030 -964606354627597474 chip.bam2ta_ctl 5434142991365807272 TAG-ALIGN -964606354627597474->5434142991365807272 5434142991365807272->-6873029885052718342 8953464767627237558 Filt/deduped BAM 8953464767627237558->-964606354627597474 8953464767627237558->-547608476781328030 7921280863857425175 chip.bam2ta_ctl 367625116112884334 TAG-ALIGN 7921280863857425175->367625116112884334 367625116112884334->-6873029885052718342 6651691447555294160 Filt/deduped BAM 6651691447555294160->7921280863857425175 6651691447555294160->-547608476781328030 -5806301920107843828 chip.bam2ta_ctl 7140280890031156261 TAG-ALIGN -5806301920107843828->7140280890031156261 7140280890031156261->-6873029885052718342 -6151942610946269719 Filt/deduped BAM -6151942610946269719->-5806301920107843828 -6151942610946269719->-547608476781328030 6974794490904161132 chip.bam2ta_ctl -9150683368146698297 TAG-ALIGN 6974794490904161132->-9150683368146698297 -9150683368146698297->-6873029885052718342 2765725584201843650 Filt/deduped BAM 2765725584201843650->6974794490904161132 2765725584201843650->-547608476781328030 7483524493649412407 chip.bam2ta_ctl 6020558857523718291 TAG-ALIGN 7483524493649412407->6020558857523718291 6020558857523718291->-6873029885052718342 -6791617562687895618 Filt/deduped BAM -6791617562687895618->7483524493649412407 -6791617562687895618->-547608476781328030 658997758424151159 chip.bam2ta_ctl -3853741936560669153 TAG-ALIGN 658997758424151159->-3853741936560669153 -3853741936560669153->-6873029885052718342 -925388675307254253 Filt/deduped BAM -925388675307254253->658997758424151159 -925388675307254253->-547608476781328030 5322767832714512356 chip.bam2ta_ctl -6717748164270496092 TAG-ALIGN 5322767832714512356->-6717748164270496092 -6717748164270496092->-6873029885052718342 -4028963922689814230 Filt/deduped BAM -4028963922689814230->5322767832714512356 -4028963922689814230->-547608476781328030 5221619408763341448 chip.bam2ta_ctl -5961504699169629140 TAG-ALIGN 5221619408763341448->-5961504699169629140 -5961504699169629140->-6873029885052718342 2705460941373120591 Filt/deduped BAM 2705460941373120591->5221619408763341448 2705460941373120591->-547608476781328030 -6082095889242787789 chip.bam2ta_ctl 2550393801677428743 TAG-ALIGN -6082095889242787789->2550393801677428743 2550393801677428743->-6873029885052718342 -3718510379543876422 Filt/deduped BAM -3718510379543876422->-6082095889242787789 -3718510379543876422->-547608476781328030 -3257432434353790579 chip.bam2ta_ctl 1428764616201969253 TAG-ALIGN -3257432434353790579->1428764616201969253 1428764616201969253->-6873029885052718342 -4026390111361098381 Filt/deduped BAM -4026390111361098381->-3257432434353790579 -4026390111361098381->-547608476781328030 -6329831180944336135 chip.bam2ta_ctl -5040687759805696691 TAG-ALIGN -6329831180944336135->-5040687759805696691 -5040687759805696691->-6873029885052718342 7588637797980494032 Filt/deduped BAM 7588637797980494032->-6329831180944336135 7588637797980494032->-547608476781328030 2173750590092928247 chip.bam2ta_ctl 7660612078990921477 TAG-ALIGN 2173750590092928247->7660612078990921477 7660612078990921477->-6873029885052718342 2940576284995901015 Filt/deduped BAM 2940576284995901015->2173750590092928247 2940576284995901015->-547608476781328030 709534884595477000 chip.bam2ta_ctl -3827852639641743981 TAG-ALIGN 709534884595477000->-3827852639641743981 -3827852639641743981->-6873029885052718342 -7691329518029275199 Filt/deduped BAM -7691329518029275199->709534884595477000 -7691329518029275199->-547608476781328030 -3708001280780294684 chip.bam2ta_ctl 3676345486982168171 TAG-ALIGN -3708001280780294684->3676345486982168171 3676345486982168171->-6873029885052718342 4648610545099335752 Filt/deduped BAM 4648610545099335752->-3708001280780294684 4648610545099335752->-547608476781328030 5376931074238182570 chip.bam2ta_ctl -1394899300059976514 TAG-ALIGN 5376931074238182570->-1394899300059976514 -1394899300059976514->-6873029885052718342 4266582257462431150 Filt/deduped BAM 4266582257462431150->5376931074238182570 4266582257462431150->-547608476781328030 346974984527048490 chip.bam2ta_ctl -8197102158556540594 TAG-ALIGN 346974984527048490->-8197102158556540594 -8197102158556540594->-6873029885052718342 -5613374607298747265 Filt/deduped BAM -5613374607298747265->346974984527048490 -5613374607298747265->-547608476781328030 -4283826814843765528 chip.bam2ta_ctl 7798116471733367707 TAG-ALIGN -4283826814843765528->7798116471733367707 7798116471733367707->-6873029885052718342 7923649112583130405 Filt/deduped BAM 7923649112583130405->-4283826814843765528 7923649112583130405->-547608476781328030 8195854699434805366 chip.bam2ta_ctl -1034750745139417879 TAG-ALIGN 8195854699434805366->-1034750745139417879 -1034750745139417879->-6873029885052718342 -8757842433568728428 Filt/deduped BAM -8757842433568728428->8195854699434805366 -8757842433568728428->-547608476781328030 4594353927415173628 chip.bam2ta_ctl -1768380778591018971 TAG-ALIGN 4594353927415173628->-1768380778591018971 -1768380778591018971->-6873029885052718342 -649178917802054391 Filt/deduped BAM -649178917802054391->4594353927415173628 -649178917802054391->-547608476781328030 -7831277227312398814 chip.bam2ta_ctl 5666547013986271032 TAG-ALIGN -7831277227312398814->5666547013986271032 5666547013986271032->-6873029885052718342 -4647985534040232463 Filt/deduped BAM -4647985534040232463->-7831277227312398814 -4647985534040232463->-547608476781328030 7126834501492217740 chip.bam2ta_ctl 8487494881308720644 TAG-ALIGN 7126834501492217740->8487494881308720644 8487494881308720644->-6873029885052718342 -4258054592355819892 Filt/deduped BAM -4258054592355819892->7126834501492217740 -4258054592355819892->-547608476781328030 -3436463182108955031 chip.bam2ta_ctl 3734056588788820297 TAG-ALIGN -3436463182108955031->3734056588788820297 3734056588788820297->-6873029885052718342 -2872473530718491417 Filt/deduped BAM -2872473530718491417->-3436463182108955031 -2872473530718491417->-547608476781328030 -283914796296223452 chip.bam2ta_ctl 6853331539207419976 TAG-ALIGN -283914796296223452->6853331539207419976 6853331539207419976->-6873029885052718342 -6611350152791075058 Filt/deduped BAM -6611350152791075058->-283914796296223452 -6611350152791075058->-547608476781328030 -7099201303921490870 IDR Plot ppr -5036340448517139450->-7099201303921490870 -3268925049442822398 IDR Peak ppr -5036340448517139450->-3268925049442822398 -3268925049442822398->741422004540664049 -6558880971627168684 IDR Plot rep1_vs_rep2 6012538445679026651->-6558880971627168684 8638935892572229213 IDR NPeak rep1_vs_rep2 6012538445679026651->8638935892572229213 8638935892572229213->741422004540664049 -3358823635100301896 Overlap Peak rep1_vs_rep2 -3144505118154015734->-3358823635100301896 -3358823635100301896->2841717070767780086 5155491709602574273 Overlap Peak optimal 2841717070767780086->5155491709602574273 -9211080073646071576 Overlap reproducibility 2841717070767780086->-9211080073646071576 -7995407458442032226 IDR Peak optimal 741422004540664049->-7995407458442032226 -1145219087949879316 IDR reproducibility 741422004540664049->-1145219087949879316 1551488209060606170 Overlap Peak ppr 3355139999075981479->1551488209060606170 1551488209060606170->2841717070767780086 6734092753735901262 JSD Plot -547608476781328030->6734092753735901262

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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