File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF360SUA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF360SUA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF360SUA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF360SUA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF360SUA.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF093AOC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF093AOC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF093AOC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF093AOC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF093AOC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.527M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.527M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.527M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF360SUA.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF360SUA.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF360SUA.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF360SUA.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF360SUA.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF360SUA.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF360SUA.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF360SUA.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF093AOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF093AOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF093AOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF093AOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.256M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF093AOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF093AOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF093AOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF093AOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.256M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.527M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF360SUA.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF360SUA.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF360SUA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF360SUA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF360SUA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF360SUA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF360SUA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF360SUA.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF093AOC.crop_101-2bp.nodup.pr1_x_ctl.pooled.256M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF093AOC.crop_101-2bp.nodup.pr2_x_ctl.pooled.256M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF093AOC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF093AOC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF093AOC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF093AOC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF093AOC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF093AOC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF360SUA.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/1f8c1772-8dce-4edc-baa9-4a2c2c8748e7/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.527M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.527M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF360SUA.crop_101-2bp.nodup_x_ctl.pooled.270M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/37773724-3c46-40cc-b09e-435f90de27b4/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF093AOC.crop_101-2bp.nodup_x_ctl.pooled.256M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -2406236778474281192 chip.macs2_signal_track_pooled -2766691078211051944 BW FC -2406236778474281192->-2766691078211051944 -9117734269292276575 BW p-val -2406236778474281192->-9117734269292276575 9046655442250235674 chip.call_peak_pooled -3793235718737935582 Peak (bfilt) 9046655442250235674->-3793235718737935582 -8276618643975049186 Peak 9046655442250235674->-8276618643975049186 3442824580317067064 chip.idr_ppr -8276618643975049186->3442824580317067064 2261120613422347838 chip.idr -8276618643975049186->2261120613422347838 -3584142929553185498 chip.overlap -8276618643975049186->-3584142929553185498 -4537018778740770516 chip.overlap_ppr -8276618643975049186->-4537018778740770516 -3729795252298692316 chip.pool_ta -7472334386397553946 TAG-ALIGN -3729795252298692316->-7472334386397553946 -7472334386397553946->-2406236778474281192 -7472334386397553946->9046655442250235674 -7472334386397553946->3442824580317067064 -7472334386397553946->2261120613422347838 -7472334386397553946->-3584142929553185498 -7472334386397553946->-4537018778740770516 375041924996961128 chip.call_peak -3126772107217976337 Peak (bfilt) 375041924996961128->-3126772107217976337 7408487874543476319 Peak 375041924996961128->7408487874543476319 7408487874543476319->2261120613422347838 7408487874543476319->-3584142929553185498 -8637375256674553504 chip.reproducibility_overlap 7408487874543476319->-8637375256674553504 -3197873519491409561 chip.reproducibility_idr 7408487874543476319->-3197873519491409561 -327256708086679325 chip.bam2ta -7234096672940434505 TAG-ALIGN -327256708086679325->-7234096672940434505 -7234096672940434505->-3729795252298692316 -7234096672940434505->375041924996961128 3302237713466370552 chip.macs2_signal_track -7234096672940434505->3302237713466370552 -7234096672940434505->3442824580317067064 -7234096672940434505->-8637375256674553504 -7234096672940434505->-3197873519491409561 -7234096672940434505->-4537018778740770516 -743267139224983577 chip.filter -2528081229414162239 SAMstats QC -743267139224983577->-2528081229414162239 2910078640804341883 Filt/deduped BAM -743267139224983577->2910078640804341883 1525851307431595729 LibCmplx QC -743267139224983577->1525851307431595729 2910078640804341883->-327256708086679325 1723325432270850919 chip.jsd 2910078640804341883->1723325432270850919 3922112300148985214 chip.align 7231823799427440014 SAMstats QC 3922112300148985214->7231823799427440014 3653232187157000614 BAM 3922112300148985214->3653232187157000614 3653232187157000614->-743267139224983577 -4884922828827496931 chip.xcor 6164338426224732403 XCOR Plot -4884922828827496931->6164338426224732403 8880202069496504521 BW FC 3302237713466370552->8880202069496504521 4390187322777995897 BW p-val 3302237713466370552->4390187322777995897 -7521114939004259159 FASTQ R1 (1) -7521114939004259159->3922112300148985214 -7521114939004259159->-4884922828827496931 -5029467492028213420 FASTQ R2 (1) -5029467492028213420->3922112300148985214 3187989727873848749 chip.call_peak 7273036496718107652 Peak (bfilt) 3187989727873848749->7273036496718107652 -5308194069853310 Peak 3187989727873848749->-5308194069853310 -5308194069853310->2261120613422347838 -5308194069853310->-3584142929553185498 -5308194069853310->-8637375256674553504 -5308194069853310->-3197873519491409561 -4360220374609483792 chip.bam2ta -2726375822705484072 TAG-ALIGN -4360220374609483792->-2726375822705484072 -2726375822705484072->-3729795252298692316 -2726375822705484072->3187989727873848749 -5705061334156213463 chip.macs2_signal_track -2726375822705484072->-5705061334156213463 -2726375822705484072->3442824580317067064 -2726375822705484072->-8637375256674553504 -2726375822705484072->-3197873519491409561 -2726375822705484072->-4537018778740770516 -7804727351569700475 chip.filter -5146167006591889352 SAMstats QC -7804727351569700475->-5146167006591889352 6443230099498372142 Filt/deduped BAM -7804727351569700475->6443230099498372142 6077896094078371772 LibCmplx QC -7804727351569700475->6077896094078371772 6443230099498372142->-4360220374609483792 6443230099498372142->1723325432270850919 6625867554756136091 chip.align 8771256155906705648 SAMstats QC 6625867554756136091->8771256155906705648 6048528790136281348 BAM 6625867554756136091->6048528790136281348 6048528790136281348->-7804727351569700475 -3654871759401621039 chip.xcor -7523375228947545370 XCOR Plot -3654871759401621039->-7523375228947545370 1157665627418263195 BW FC -5705061334156213463->1157665627418263195 -3722711934513421559 BW p-val -5705061334156213463->-3722711934513421559 -5461128404276106446 FASTQ R1 (1) -5461128404276106446->6625867554756136091 -5461128404276106446->-3654871759401621039 -962811999043990234 FASTQ R2 (1) -962811999043990234->6625867554756136091 3522586165159306281 chip.pool_ta_ctl 6808641484288209733 TAG-ALIGN 3522586165159306281->6808641484288209733 6808641484288209733->-2406236778474281192 6808641484288209733->9046655442250235674 6808641484288209733->375041924996961128 6808641484288209733->3302237713466370552 6808641484288209733->3187989727873848749 6808641484288209733->-5705061334156213463 6808641484288209733->3442824580317067064 6808641484288209733->-8637375256674553504 6808641484288209733->-3197873519491409561 6808641484288209733->-4537018778740770516 -621515313147163805 chip.bam2ta_ctl 9072354736240267604 TAG-ALIGN -621515313147163805->9072354736240267604 9072354736240267604->3522586165159306281 -5762347763528441010 Filt/deduped BAM -5762347763528441010->-621515313147163805 -5762347763528441010->1723325432270850919 8056108071751416518 chip.bam2ta_ctl -1529051674559720710 TAG-ALIGN 8056108071751416518->-1529051674559720710 -1529051674559720710->3522586165159306281 -7560898185098571058 Filt/deduped BAM -7560898185098571058->8056108071751416518 -7560898185098571058->1723325432270850919 4132256281436095439 chip.bam2ta_ctl 4651828130481806430 TAG-ALIGN 4132256281436095439->4651828130481806430 4651828130481806430->3522586165159306281 -8655469715370301390 Filt/deduped BAM -8655469715370301390->4132256281436095439 -8655469715370301390->1723325432270850919 1441660241874751097 chip.bam2ta_ctl 2338108537785185078 TAG-ALIGN 1441660241874751097->2338108537785185078 2338108537785185078->3522586165159306281 -4996545262719629521 Filt/deduped BAM -4996545262719629521->1441660241874751097 -4996545262719629521->1723325432270850919 7151238262552611333 chip.bam2ta_ctl -1973034987988148065 TAG-ALIGN 7151238262552611333->-1973034987988148065 -1973034987988148065->3522586165159306281 -8173278049976976823 Filt/deduped BAM -8173278049976976823->7151238262552611333 -8173278049976976823->1723325432270850919 8673799664014409254 chip.bam2ta_ctl -5835378829352697838 TAG-ALIGN 8673799664014409254->-5835378829352697838 -5835378829352697838->3522586165159306281 357049096366565282 Filt/deduped BAM 357049096366565282->8673799664014409254 357049096366565282->1723325432270850919 7640084188938626725 chip.bam2ta_ctl -8910371905415033715 TAG-ALIGN 7640084188938626725->-8910371905415033715 -8910371905415033715->3522586165159306281 -9199287234202268503 Filt/deduped BAM -9199287234202268503->7640084188938626725 -9199287234202268503->1723325432270850919 -5747118182825976211 chip.bam2ta_ctl 4038097734500827405 TAG-ALIGN -5747118182825976211->4038097734500827405 4038097734500827405->3522586165159306281 -1173034719940018506 Filt/deduped BAM -1173034719940018506->-5747118182825976211 -1173034719940018506->1723325432270850919 1076406628001876209 chip.bam2ta_ctl -7835977507398573983 TAG-ALIGN 1076406628001876209->-7835977507398573983 -7835977507398573983->3522586165159306281 102183195800932555 Filt/deduped BAM 102183195800932555->1076406628001876209 102183195800932555->1723325432270850919 1723295720161328262 chip.bam2ta_ctl -4507953029925275070 TAG-ALIGN 1723295720161328262->-4507953029925275070 -4507953029925275070->3522586165159306281 1793315144940258686 Filt/deduped BAM 1793315144940258686->1723295720161328262 1793315144940258686->1723325432270850919 5714087608887956328 chip.bam2ta_ctl -2127671665317589286 TAG-ALIGN 5714087608887956328->-2127671665317589286 -2127671665317589286->3522586165159306281 -3592788441249182127 Filt/deduped BAM -3592788441249182127->5714087608887956328 -3592788441249182127->1723325432270850919 -3183639630025113569 chip.bam2ta_ctl 3192201972974272733 TAG-ALIGN -3183639630025113569->3192201972974272733 3192201972974272733->3522586165159306281 -2278230353462568628 Filt/deduped BAM -2278230353462568628->-3183639630025113569 -2278230353462568628->1723325432270850919 241494696476125413 chip.bam2ta_ctl -901756896500694339 TAG-ALIGN 241494696476125413->-901756896500694339 -901756896500694339->3522586165159306281 -1682838026787610033 Filt/deduped BAM -1682838026787610033->241494696476125413 -1682838026787610033->1723325432270850919 -232350163871192963 chip.bam2ta_ctl 8520277288073431536 TAG-ALIGN -232350163871192963->8520277288073431536 8520277288073431536->3522586165159306281 -1667628547390373965 Filt/deduped BAM -1667628547390373965->-232350163871192963 -1667628547390373965->1723325432270850919 4022627135476147834 chip.bam2ta_ctl 831588438582029236 TAG-ALIGN 4022627135476147834->831588438582029236 831588438582029236->3522586165159306281 861885881920308929 Filt/deduped BAM 861885881920308929->4022627135476147834 861885881920308929->1723325432270850919 -5491856521692261162 chip.bam2ta_ctl -1651649539022784237 TAG-ALIGN -5491856521692261162->-1651649539022784237 -1651649539022784237->3522586165159306281 8767163523321839739 Filt/deduped BAM 8767163523321839739->-5491856521692261162 8767163523321839739->1723325432270850919 1002453019802140546 chip.bam2ta_ctl 196132882729635048 TAG-ALIGN 1002453019802140546->196132882729635048 196132882729635048->3522586165159306281 -2195450150724333017 Filt/deduped BAM -2195450150724333017->1002453019802140546 -2195450150724333017->1723325432270850919 4024774454014199673 chip.bam2ta_ctl -247867164158711429 TAG-ALIGN 4024774454014199673->-247867164158711429 -247867164158711429->3522586165159306281 -3730284518466557598 Filt/deduped BAM -3730284518466557598->4024774454014199673 -3730284518466557598->1723325432270850919 -417591404847242733 chip.bam2ta_ctl -8318428605578787743 TAG-ALIGN -417591404847242733->-8318428605578787743 -8318428605578787743->3522586165159306281 3156506697608383783 Filt/deduped BAM 3156506697608383783->-417591404847242733 3156506697608383783->1723325432270850919 -6407257069026770314 chip.bam2ta_ctl 8321359466579318597 TAG-ALIGN -6407257069026770314->8321359466579318597 8321359466579318597->3522586165159306281 8120213065354676101 Filt/deduped BAM 8120213065354676101->-6407257069026770314 8120213065354676101->1723325432270850919 -4882181636444056555 chip.bam2ta_ctl 1058195262438765440 TAG-ALIGN -4882181636444056555->1058195262438765440 1058195262438765440->3522586165159306281 5480343261204033860 Filt/deduped BAM 5480343261204033860->-4882181636444056555 5480343261204033860->1723325432270850919 -3182766278126451306 chip.bam2ta_ctl -7048907418040670472 TAG-ALIGN -3182766278126451306->-7048907418040670472 -7048907418040670472->3522586165159306281 734674189689125192 Filt/deduped BAM 734674189689125192->-3182766278126451306 734674189689125192->1723325432270850919 6666249695134988168 chip.bam2ta_ctl 8577051023319132274 TAG-ALIGN 6666249695134988168->8577051023319132274 8577051023319132274->3522586165159306281 5752636718487944101 Filt/deduped BAM 5752636718487944101->6666249695134988168 5752636718487944101->1723325432270850919 -3102962344469367421 chip.bam2ta_ctl -6084184039374116309 TAG-ALIGN -3102962344469367421->-6084184039374116309 -6084184039374116309->3522586165159306281 191691719854652018 Filt/deduped BAM 191691719854652018->-3102962344469367421 191691719854652018->1723325432270850919 -5569599947183995136 IDR Plot ppr 3442824580317067064->-5569599947183995136 638376252539061190 IDR Peak ppr 3442824580317067064->638376252539061190 638376252539061190->-3197873519491409561 -4371249423875402573 IDR Plot rep1_vs_rep2 2261120613422347838->-4371249423875402573 -1412784164595821703 IDR NPeak rep1_vs_rep2 2261120613422347838->-1412784164595821703 -1412784164595821703->-3197873519491409561 -5135550076723331949 Overlap Peak rep1_vs_rep2 -3584142929553185498->-5135550076723331949 -5135550076723331949->-8637375256674553504 -8523945519634757808 Overlap Peak optimal -8637375256674553504->-8523945519634757808 -9157891829282533570 Overlap reproducibility -8637375256674553504->-9157891829282533570 1341415883285925131 IDR Peak optimal -3197873519491409561->1341415883285925131 884086057020015973 IDR reproducibility -3197873519491409561->884086057020015973 5367240729007360368 Overlap Peak ppr -4537018778740770516->5367240729007360368 5367240729007360368->-8637375256674553504 7204360634653248072 JSD Plot 1723325432270850919->7204360634653248072

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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