File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF312XEN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF312XEN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF312XEN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF312XEN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF312XEN.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF426NQH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF426NQH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF426NQH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF426NQH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF426NQH.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.563M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.563M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.563M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.563M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.563M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.563M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.563M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF312XEN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF312XEN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF312XEN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF312XEN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF312XEN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF312XEN.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF426NQH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF426NQH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF426NQH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF426NQH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF426NQH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF426NQH.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF312XEN.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.563M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.563M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -3843534974002639505 chip.macs2_signal_track_pooled 1491657958800582412 BW FC -3843534974002639505->1491657958800582412 2617763279340034685 BW p-val -3843534974002639505->2617763279340034685 -1032769098558141561 chip.call_peak_pooled 2170293246455668062 Peak (bfilt) -1032769098558141561->2170293246455668062 -6319677252292768533 Peak -1032769098558141561->-6319677252292768533 -8041298008474512366 chip.idr_ppr -6319677252292768533->-8041298008474512366 -8285823453073609825 chip.idr -6319677252292768533->-8285823453073609825 -812149845817236535 chip.overlap -6319677252292768533->-812149845817236535 1647788923213661141 chip.overlap_ppr -6319677252292768533->1647788923213661141 -8399141341149642384 chip.pool_ta -7481053761701616241 TAG-ALIGN -8399141341149642384->-7481053761701616241 -7481053761701616241->-3843534974002639505 -7481053761701616241->-1032769098558141561 -7481053761701616241->-8041298008474512366 -7481053761701616241->-8285823453073609825 -7481053761701616241->-812149845817236535 -7481053761701616241->1647788923213661141 3502864779339164082 chip.call_peak 5581515592579901568 Peak (bfilt) 3502864779339164082->5581515592579901568 4234626761856326816 Peak 3502864779339164082->4234626761856326816 4234626761856326816->-8285823453073609825 4234626761856326816->-812149845817236535 7394292276731965764 chip.reproducibility_overlap 4234626761856326816->7394292276731965764 152171833263632626 chip.reproducibility_idr 4234626761856326816->152171833263632626 3552052423734511225 chip.bam2ta 5871991697075850969 TAG-ALIGN 3552052423734511225->5871991697075850969 5871991697075850969->-8399141341149642384 5871991697075850969->3502864779339164082 3637767756555918742 chip.macs2_signal_track 5871991697075850969->3637767756555918742 5871991697075850969->-8041298008474512366 5871991697075850969->7394292276731965764 5871991697075850969->152171833263632626 5871991697075850969->1647788923213661141 -2448522417318354580 chip.filter 9195964441401968290 SAMstats QC -2448522417318354580->9195964441401968290 -1584388300044043221 Filt/deduped BAM -2448522417318354580->-1584388300044043221 -8948648164730353119 LibCmplx QC -2448522417318354580->-8948648164730353119 -1584388300044043221->3552052423734511225 4355372478828286170 chip.jsd -1584388300044043221->4355372478828286170 -1209998743763524330 chip.jsd -1584388300044043221->-1209998743763524330 3045106756736213683 chip.align -3462996505292717179 SAMstats QC 3045106756736213683->-3462996505292717179 -2600450628417969030 BAM 3045106756736213683->-2600450628417969030 -2600450628417969030->-2448522417318354580 7672033758491298701 chip.xcor -6419377647652720248 XCOR Plot 7672033758491298701->-6419377647652720248 -6699359089584650928 BW FC 3637767756555918742->-6699359089584650928 5961483706943785419 BW p-val 3637767756555918742->5961483706943785419 -128642904604756512 FASTQ R1 (1) -128642904604756512->3045106756736213683 -128642904604756512->7672033758491298701 -7539276893191688346 FASTQ R2 (1) -7539276893191688346->3045106756736213683 1415057414797276021 chip.call_peak 9090201710250701489 Peak (bfilt) 1415057414797276021->9090201710250701489 -6364665411954985729 Peak 1415057414797276021->-6364665411954985729 -6364665411954985729->-8285823453073609825 -6364665411954985729->-812149845817236535 -6364665411954985729->7394292276731965764 -6364665411954985729->152171833263632626 -4658297664172624726 chip.bam2ta -1994253107513661633 TAG-ALIGN -4658297664172624726->-1994253107513661633 -1994253107513661633->-8399141341149642384 -1994253107513661633->1415057414797276021 2627557259107842984 chip.macs2_signal_track -1994253107513661633->2627557259107842984 -1994253107513661633->-8041298008474512366 -1994253107513661633->7394292276731965764 -1994253107513661633->152171833263632626 -1994253107513661633->1647788923213661141 -766931956371545175 chip.filter -2009103917286610378 SAMstats QC -766931956371545175->-2009103917286610378 5536595350913735517 Filt/deduped BAM -766931956371545175->5536595350913735517 -7379127419892380548 LibCmplx QC -766931956371545175->-7379127419892380548 5536595350913735517->-4658297664172624726 5536595350913735517->4355372478828286170 5536595350913735517->-1209998743763524330 -5828530162200347094 chip.align -5841274330705694731 SAMstats QC -5828530162200347094->-5841274330705694731 -4485053465566147991 BAM -5828530162200347094->-4485053465566147991 -4485053465566147991->-766931956371545175 8891073630426717417 chip.xcor -5366461199264253973 XCOR Plot 8891073630426717417->-5366461199264253973 -1211841592950118289 BW FC 2627557259107842984->-1211841592950118289 5639871157902042757 BW p-val 2627557259107842984->5639871157902042757 -3599014353411378978 FASTQ R1 (1) -3599014353411378978->-5828530162200347094 -3599014353411378978->8891073630426717417 1127574840929164051 FASTQ R2 (1) 1127574840929164051->-5828530162200347094 3744140179754092532 chip.pool_ta_ctl 7553739468837781283 TAG-ALIGN 3744140179754092532->7553739468837781283 7553739468837781283->-3843534974002639505 7553739468837781283->-1032769098558141561 7553739468837781283->3502864779339164082 7553739468837781283->3637767756555918742 7553739468837781283->1415057414797276021 7553739468837781283->2627557259107842984 7553739468837781283->-8041298008474512366 7553739468837781283->7394292276731965764 7553739468837781283->152171833263632626 7553739468837781283->1647788923213661141 6455047513267057408 chip.bam2ta_ctl -8003373574237724834 TAG-ALIGN 6455047513267057408->-8003373574237724834 -8003373574237724834->3744140179754092532 -186852485350170886 Filt/deduped BAM -186852485350170886->6455047513267057408 -186852485350170886->4355372478828286170 -186852485350170886->-1209998743763524330 1096201375993381566 chip.bam2ta_ctl -2498425907134732934 TAG-ALIGN 1096201375993381566->-2498425907134732934 -2498425907134732934->3744140179754092532 -5980135841282317405 Filt/deduped BAM -5980135841282317405->1096201375993381566 -5980135841282317405->4355372478828286170 -5980135841282317405->-1209998743763524330 -7096034383600654109 chip.bam2ta_ctl -2241821320696703821 TAG-ALIGN -7096034383600654109->-2241821320696703821 -2241821320696703821->3744140179754092532 -4764454336409999080 Filt/deduped BAM -4764454336409999080->-7096034383600654109 -4764454336409999080->4355372478828286170 -4764454336409999080->-1209998743763524330 -226029281493232284 chip.bam2ta_ctl -7261767920567666419 TAG-ALIGN -226029281493232284->-7261767920567666419 -7261767920567666419->3744140179754092532 3970075023383192386 Filt/deduped BAM 3970075023383192386->-226029281493232284 3970075023383192386->4355372478828286170 3970075023383192386->-1209998743763524330 2412375803030197918 chip.bam2ta_ctl 9197822909116647872 TAG-ALIGN 2412375803030197918->9197822909116647872 9197822909116647872->3744140179754092532 -5504688254963431858 Filt/deduped BAM -5504688254963431858->2412375803030197918 -5504688254963431858->4355372478828286170 -5504688254963431858->-1209998743763524330 8879167733796601884 chip.bam2ta_ctl 2063161317450024070 TAG-ALIGN 8879167733796601884->2063161317450024070 2063161317450024070->3744140179754092532 8583495919812287709 Filt/deduped BAM 8583495919812287709->8879167733796601884 8583495919812287709->4355372478828286170 8583495919812287709->-1209998743763524330 -1810980445639037857 chip.bam2ta_ctl 6124105452811448731 TAG-ALIGN -1810980445639037857->6124105452811448731 6124105452811448731->3744140179754092532 3405078599746365288 Filt/deduped BAM 3405078599746365288->-1810980445639037857 3405078599746365288->4355372478828286170 3405078599746365288->-1209998743763524330 6262422767563722100 chip.bam2ta_ctl -263365000926828691 TAG-ALIGN 6262422767563722100->-263365000926828691 -263365000926828691->3744140179754092532 2043192093581663438 Filt/deduped BAM 2043192093581663438->6262422767563722100 2043192093581663438->4355372478828286170 2043192093581663438->-1209998743763524330 -7630021971417220714 chip.bam2ta_ctl -5240197125487214415 TAG-ALIGN -7630021971417220714->-5240197125487214415 -5240197125487214415->3744140179754092532 -2876158682428537047 Filt/deduped BAM -2876158682428537047->-7630021971417220714 -2876158682428537047->4355372478828286170 -2876158682428537047->-1209998743763524330 1655814918208257474 chip.bam2ta_ctl 4520502750044670792 TAG-ALIGN 1655814918208257474->4520502750044670792 4520502750044670792->3744140179754092532 -3135174889985397319 Filt/deduped BAM -3135174889985397319->1655814918208257474 -3135174889985397319->4355372478828286170 -3135174889985397319->-1209998743763524330 -8326546817815575359 chip.bam2ta_ctl -6151963342599748500 TAG-ALIGN -8326546817815575359->-6151963342599748500 -6151963342599748500->3744140179754092532 7856413403390704231 Filt/deduped BAM 7856413403390704231->-8326546817815575359 7856413403390704231->4355372478828286170 7856413403390704231->-1209998743763524330 6600394631107495252 chip.bam2ta_ctl -7027887585257085568 TAG-ALIGN 6600394631107495252->-7027887585257085568 -7027887585257085568->3744140179754092532 828813403842980905 Filt/deduped BAM 828813403842980905->6600394631107495252 828813403842980905->4355372478828286170 828813403842980905->-1209998743763524330 -2310119649535514226 chip.bam2ta_ctl -1415026617097982974 TAG-ALIGN -2310119649535514226->-1415026617097982974 -1415026617097982974->3744140179754092532 -2764676931372093844 Filt/deduped BAM -2764676931372093844->-2310119649535514226 -2764676931372093844->4355372478828286170 -2764676931372093844->-1209998743763524330 -8532030823808328073 chip.bam2ta_ctl 1289262008793521976 TAG-ALIGN -8532030823808328073->1289262008793521976 1289262008793521976->3744140179754092532 -8865430028997600656 Filt/deduped BAM -8865430028997600656->-8532030823808328073 -8865430028997600656->4355372478828286170 -8865430028997600656->-1209998743763524330 -3829118553238754882 chip.bam2ta_ctl 7378134559361499333 TAG-ALIGN -3829118553238754882->7378134559361499333 7378134559361499333->3744140179754092532 -7129199401766918029 Filt/deduped BAM -7129199401766918029->-3829118553238754882 -7129199401766918029->4355372478828286170 -7129199401766918029->-1209998743763524330 7544357255468597753 chip.bam2ta_ctl -5857708006607997440 TAG-ALIGN 7544357255468597753->-5857708006607997440 -5857708006607997440->3744140179754092532 9118320994552304604 Filt/deduped BAM 9118320994552304604->7544357255468597753 9118320994552304604->4355372478828286170 9118320994552304604->-1209998743763524330 -2936817414033603988 chip.bam2ta_ctl 8492302673547244402 TAG-ALIGN -2936817414033603988->8492302673547244402 8492302673547244402->3744140179754092532 2119557097427883362 Filt/deduped BAM 2119557097427883362->-2936817414033603988 2119557097427883362->4355372478828286170 2119557097427883362->-1209998743763524330 516904977827619105 chip.bam2ta_ctl -6317505082567706629 TAG-ALIGN 516904977827619105->-6317505082567706629 -6317505082567706629->3744140179754092532 5822703917272165063 Filt/deduped BAM 5822703917272165063->516904977827619105 5822703917272165063->4355372478828286170 5822703917272165063->-1209998743763524330 5969800031734672250 chip.bam2ta_ctl -229083967839779951 TAG-ALIGN 5969800031734672250->-229083967839779951 -229083967839779951->3744140179754092532 1183223649612005815 Filt/deduped BAM 1183223649612005815->5969800031734672250 1183223649612005815->4355372478828286170 1183223649612005815->-1209998743763524330 -7909082784519621759 chip.bam2ta_ctl -4926291681425487069 TAG-ALIGN -7909082784519621759->-4926291681425487069 -4926291681425487069->3744140179754092532 -2363965183376216355 Filt/deduped BAM -2363965183376216355->-7909082784519621759 -2363965183376216355->4355372478828286170 -2363965183376216355->-1209998743763524330 3310527182452604528 chip.bam2ta_ctl -895939651478488612 TAG-ALIGN 3310527182452604528->-895939651478488612 -895939651478488612->3744140179754092532 6700775091319114220 Filt/deduped BAM 6700775091319114220->3310527182452604528 6700775091319114220->4355372478828286170 6700775091319114220->-1209998743763524330 -8463774925752987217 chip.bam2ta_ctl 5893199792936853818 TAG-ALIGN -8463774925752987217->5893199792936853818 5893199792936853818->3744140179754092532 -5545855747503428198 Filt/deduped BAM -5545855747503428198->-8463774925752987217 -5545855747503428198->4355372478828286170 -5545855747503428198->-1209998743763524330 -7618666487153869848 chip.bam2ta_ctl 8775814311563509075 TAG-ALIGN -7618666487153869848->8775814311563509075 8775814311563509075->3744140179754092532 4005374376581201331 Filt/deduped BAM 4005374376581201331->-7618666487153869848 4005374376581201331->4355372478828286170 4005374376581201331->-1209998743763524330 -12104052634747280 chip.bam2ta_ctl -8526199200472401342 TAG-ALIGN -12104052634747280->-8526199200472401342 -8526199200472401342->3744140179754092532 -7198733479058443009 Filt/deduped BAM -7198733479058443009->-12104052634747280 -7198733479058443009->4355372478828286170 -7198733479058443009->-1209998743763524330 680553686609315355 IDR Plot ppr -8041298008474512366->680553686609315355 8828851297708657678 IDR Peak ppr -8041298008474512366->8828851297708657678 8828851297708657678->152171833263632626 493960770804823923 IDR Plot rep1_vs_rep2 -8285823453073609825->493960770804823923 5708032134490567817 IDR NPeak rep1_vs_rep2 -8285823453073609825->5708032134490567817 5708032134490567817->152171833263632626 3823474046605720406 Overlap Peak rep1_vs_rep2 -812149845817236535->3823474046605720406 3823474046605720406->7394292276731965764 -3004333525276722593 Overlap Peak optimal 7394292276731965764->-3004333525276722593 1879569788705637765 Overlap reproducibility 7394292276731965764->1879569788705637765 6574066135196319763 IDR Peak optimal 152171833263632626->6574066135196319763 -959804369411869851 IDR reproducibility 152171833263632626->-959804369411869851 8588743950228684895 Overlap Peak ppr 1647788923213661141->8588743950228684895 8588743950228684895->7394292276731965764 -3378342347294237566 JSD Plot 4355372478828286170->-3378342347294237566 -1209998743763524330->-3378342347294237566

UCSC browser tracks

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