File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF312XEN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF312XEN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF312XEN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF312XEN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF312XEN.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF426NQH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF426NQH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF426NQH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF426NQH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF426NQH.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.563M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.563M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.563M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.563M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF312XEN.crop_101-2bp.nodup.pr1_x_ctl.pooled.269M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF312XEN.crop_101-2bp.nodup.pr2_x_ctl.pooled.269M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF312XEN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF312XEN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF312XEN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF312XEN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF312XEN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF312XEN.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF426NQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.293M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF426NQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.293M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF426NQH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF426NQH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF426NQH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF426NQH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF426NQH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF426NQH.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/5abc6bfa-9c3f-4a87-8653-38e952e2d691/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF312XEN.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/e73a7e9c-eaba-4a55-8db3-ad4f1cfd6e1c/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.563M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.563M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF312XEN.crop_101-2bp.nodup_x_ctl.pooled.269M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/65bdae01-fcc9-4291-b21f-4a73619a6f06/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF426NQH.crop_101-2bp.nodup_x_ctl.pooled.293M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 6235591788284791994 chip.macs2_signal_track_pooled -2723710360978318107 BW FC 6235591788284791994->-2723710360978318107 -2104751779758241372 BW p-val 6235591788284791994->-2104751779758241372 -6176035096275204343 chip.call_peak_pooled 3524937966027236164 Peak (bfilt) -6176035096275204343->3524937966027236164 -7937906811595076890 Peak -6176035096275204343->-7937906811595076890 -2335878599132190826 chip.idr_ppr -7937906811595076890->-2335878599132190826 -7024516336959169787 chip.idr -7937906811595076890->-7024516336959169787 8332865048224899354 chip.overlap -7937906811595076890->8332865048224899354 -6454760728757507633 chip.overlap_ppr -7937906811595076890->-6454760728757507633 623856058956078593 chip.pool_ta 8518160270385341966 TAG-ALIGN 623856058956078593->8518160270385341966 8518160270385341966->6235591788284791994 8518160270385341966->-6176035096275204343 8518160270385341966->-2335878599132190826 8518160270385341966->-7024516336959169787 8518160270385341966->8332865048224899354 8518160270385341966->-6454760728757507633 -9023164836061845184 chip.call_peak 2174047202746695901 Peak (bfilt) -9023164836061845184->2174047202746695901 -6006255026429493273 Peak -9023164836061845184->-6006255026429493273 -6006255026429493273->-7024516336959169787 -6006255026429493273->8332865048224899354 401042518776557202 chip.reproducibility_overlap -6006255026429493273->401042518776557202 6933222585586585930 chip.reproducibility_idr -6006255026429493273->6933222585586585930 -2416978400564516503 chip.bam2ta 7999265747341322018 TAG-ALIGN -2416978400564516503->7999265747341322018 7999265747341322018->623856058956078593 7999265747341322018->-9023164836061845184 881186558077346536 chip.macs2_signal_track 7999265747341322018->881186558077346536 7999265747341322018->-2335878599132190826 7999265747341322018->401042518776557202 7999265747341322018->6933222585586585930 7999265747341322018->-6454760728757507633 -2718493307284836103 chip.filter 2545234967934819159 SAMstats QC -2718493307284836103->2545234967934819159 -487747036026847398 Filt/deduped BAM -2718493307284836103->-487747036026847398 6112977631245893870 LibCmplx QC -2718493307284836103->6112977631245893870 -487747036026847398->-2416978400564516503 5156305966675235901 chip.jsd -487747036026847398->5156305966675235901 -6316043897011408292 chip.align -4039691531009701386 SAMstats QC -6316043897011408292->-4039691531009701386 -8458552578310553157 BAM -6316043897011408292->-8458552578310553157 -8458552578310553157->-2718493307284836103 5491467294855805590 chip.xcor -3244186530952802964 XCOR Plot 5491467294855805590->-3244186530952802964 5267428411518726249 BW FC 881186558077346536->5267428411518726249 -4478850092020146355 BW p-val 881186558077346536->-4478850092020146355 5341461539567109493 FASTQ R1 (1) 5341461539567109493->-6316043897011408292 5341461539567109493->5491467294855805590 -2830071907787957418 FASTQ R2 (1) -2830071907787957418->-6316043897011408292 -2878908925669778299 chip.call_peak -4814608304319584033 Peak (bfilt) -2878908925669778299->-4814608304319584033 8007638663975043467 Peak -2878908925669778299->8007638663975043467 8007638663975043467->-7024516336959169787 8007638663975043467->8332865048224899354 8007638663975043467->401042518776557202 8007638663975043467->6933222585586585930 -3441177678546646381 chip.bam2ta -8334103123989161996 TAG-ALIGN -3441177678546646381->-8334103123989161996 -8334103123989161996->623856058956078593 -8334103123989161996->-2878908925669778299 1639954087218089194 chip.macs2_signal_track -8334103123989161996->1639954087218089194 -8334103123989161996->-2335878599132190826 -8334103123989161996->401042518776557202 -8334103123989161996->6933222585586585930 -8334103123989161996->-6454760728757507633 -4887442436251452647 chip.filter 8831324916339975932 SAMstats QC -4887442436251452647->8831324916339975932 636335097010513877 Filt/deduped BAM -4887442436251452647->636335097010513877 2734048785934694020 LibCmplx QC -4887442436251452647->2734048785934694020 636335097010513877->-3441177678546646381 636335097010513877->5156305966675235901 2439949093083259091 chip.align 4312785305501104693 SAMstats QC 2439949093083259091->4312785305501104693 -6579448584290730261 BAM 2439949093083259091->-6579448584290730261 -6579448584290730261->-4887442436251452647 -7026376536500234225 chip.xcor 7258372000823750796 XCOR Plot -7026376536500234225->7258372000823750796 2847186535246008581 BW FC 1639954087218089194->2847186535246008581 9079337522828451827 BW p-val 1639954087218089194->9079337522828451827 -3536312898610633614 FASTQ R1 (1) -3536312898610633614->2439949093083259091 -3536312898610633614->-7026376536500234225 -8357267131164753618 FASTQ R2 (1) -8357267131164753618->2439949093083259091 7065362397974381493 chip.pool_ta_ctl 2274340223819482664 TAG-ALIGN 7065362397974381493->2274340223819482664 2274340223819482664->6235591788284791994 2274340223819482664->-6176035096275204343 2274340223819482664->-9023164836061845184 2274340223819482664->881186558077346536 2274340223819482664->-2878908925669778299 2274340223819482664->1639954087218089194 2274340223819482664->-2335878599132190826 2274340223819482664->401042518776557202 2274340223819482664->6933222585586585930 2274340223819482664->-6454760728757507633 -8799947416620790922 chip.bam2ta_ctl 2502662325353294231 TAG-ALIGN -8799947416620790922->2502662325353294231 2502662325353294231->7065362397974381493 -9118078252333726485 Filt/deduped BAM -9118078252333726485->-8799947416620790922 -9118078252333726485->5156305966675235901 -7620089948562742693 chip.bam2ta_ctl -99998131573009909 TAG-ALIGN -7620089948562742693->-99998131573009909 -99998131573009909->7065362397974381493 7297096926800380225 Filt/deduped BAM 7297096926800380225->-7620089948562742693 7297096926800380225->5156305966675235901 -315603094984728573 chip.bam2ta_ctl 2494885029189098996 TAG-ALIGN -315603094984728573->2494885029189098996 2494885029189098996->7065362397974381493 3010262109865054781 Filt/deduped BAM 3010262109865054781->-315603094984728573 3010262109865054781->5156305966675235901 -5240028812517257100 chip.bam2ta_ctl 4262875168670676513 TAG-ALIGN -5240028812517257100->4262875168670676513 4262875168670676513->7065362397974381493 -7907087778105756554 Filt/deduped BAM -7907087778105756554->-5240028812517257100 -7907087778105756554->5156305966675235901 -412104141181064920 chip.bam2ta_ctl 3511999869312001095 TAG-ALIGN -412104141181064920->3511999869312001095 3511999869312001095->7065362397974381493 7847570307054010869 Filt/deduped BAM 7847570307054010869->-412104141181064920 7847570307054010869->5156305966675235901 3035785391471474928 chip.bam2ta_ctl 5482361857622206322 TAG-ALIGN 3035785391471474928->5482361857622206322 5482361857622206322->7065362397974381493 -3011955349853496323 Filt/deduped BAM -3011955349853496323->3035785391471474928 -3011955349853496323->5156305966675235901 5878002495136677274 chip.bam2ta_ctl -845210788593629064 TAG-ALIGN 5878002495136677274->-845210788593629064 -845210788593629064->7065362397974381493 5466156540850916300 Filt/deduped BAM 5466156540850916300->5878002495136677274 5466156540850916300->5156305966675235901 7375189665265782815 chip.bam2ta_ctl -5485587837686328606 TAG-ALIGN 7375189665265782815->-5485587837686328606 -5485587837686328606->7065362397974381493 -2662574612666569968 Filt/deduped BAM -2662574612666569968->7375189665265782815 -2662574612666569968->5156305966675235901 3877763118776420449 chip.bam2ta_ctl 4789603552635252736 TAG-ALIGN 3877763118776420449->4789603552635252736 4789603552635252736->7065362397974381493 -1857358249649178299 Filt/deduped BAM -1857358249649178299->3877763118776420449 -1857358249649178299->5156305966675235901 1435793086133110926 chip.bam2ta_ctl 7373909376987663390 TAG-ALIGN 1435793086133110926->7373909376987663390 7373909376987663390->7065362397974381493 -3431567542821982265 Filt/deduped BAM -3431567542821982265->1435793086133110926 -3431567542821982265->5156305966675235901 5263185525253768685 chip.bam2ta_ctl 5187315764505830433 TAG-ALIGN 5263185525253768685->5187315764505830433 5187315764505830433->7065362397974381493 5489041084126009220 Filt/deduped BAM 5489041084126009220->5263185525253768685 5489041084126009220->5156305966675235901 -3130522240056562437 chip.bam2ta_ctl -432626276938457698 TAG-ALIGN -3130522240056562437->-432626276938457698 -432626276938457698->7065362397974381493 -3459593056606817668 Filt/deduped BAM -3459593056606817668->-3130522240056562437 -3459593056606817668->5156305966675235901 6017171686190980030 chip.bam2ta_ctl 2406158181868707414 TAG-ALIGN 6017171686190980030->2406158181868707414 2406158181868707414->7065362397974381493 7463963777678939324 Filt/deduped BAM 7463963777678939324->6017171686190980030 7463963777678939324->5156305966675235901 -763198902607960503 chip.bam2ta_ctl -2915611924079357199 TAG-ALIGN -763198902607960503->-2915611924079357199 -2915611924079357199->7065362397974381493 4749638710393144049 Filt/deduped BAM 4749638710393144049->-763198902607960503 4749638710393144049->5156305966675235901 -433515329836340327 chip.bam2ta_ctl 4340629020456479695 TAG-ALIGN -433515329836340327->4340629020456479695 4340629020456479695->7065362397974381493 8844895383701675130 Filt/deduped BAM 8844895383701675130->-433515329836340327 8844895383701675130->5156305966675235901 -387904305451152786 chip.bam2ta_ctl 3657249176774693004 TAG-ALIGN -387904305451152786->3657249176774693004 3657249176774693004->7065362397974381493 6812514074605628171 Filt/deduped BAM 6812514074605628171->-387904305451152786 6812514074605628171->5156305966675235901 4690590241975186202 chip.bam2ta_ctl 3627621495071296060 TAG-ALIGN 4690590241975186202->3627621495071296060 3627621495071296060->7065362397974381493 -3151576327629669274 Filt/deduped BAM -3151576327629669274->4690590241975186202 -3151576327629669274->5156305966675235901 -112119187752798909 chip.bam2ta_ctl -4156041118410249010 TAG-ALIGN -112119187752798909->-4156041118410249010 -4156041118410249010->7065362397974381493 -9040370836956333154 Filt/deduped BAM -9040370836956333154->-112119187752798909 -9040370836956333154->5156305966675235901 -1246854331421457542 chip.bam2ta_ctl 6006431215451755145 TAG-ALIGN -1246854331421457542->6006431215451755145 6006431215451755145->7065362397974381493 -1534957409195457677 Filt/deduped BAM -1534957409195457677->-1246854331421457542 -1534957409195457677->5156305966675235901 2211120206865894095 chip.bam2ta_ctl 6399899237245945185 TAG-ALIGN 2211120206865894095->6399899237245945185 6399899237245945185->7065362397974381493 2986145221533846429 Filt/deduped BAM 2986145221533846429->2211120206865894095 2986145221533846429->5156305966675235901 5169345830085626608 chip.bam2ta_ctl 9088973428750863957 TAG-ALIGN 5169345830085626608->9088973428750863957 9088973428750863957->7065362397974381493 -3533931245460122701 Filt/deduped BAM -3533931245460122701->5169345830085626608 -3533931245460122701->5156305966675235901 -7420043424103216595 chip.bam2ta_ctl 3688889329580284184 TAG-ALIGN -7420043424103216595->3688889329580284184 3688889329580284184->7065362397974381493 5643572012579331190 Filt/deduped BAM 5643572012579331190->-7420043424103216595 5643572012579331190->5156305966675235901 4423581965112821269 chip.bam2ta_ctl 68428476449851137 TAG-ALIGN 4423581965112821269->68428476449851137 68428476449851137->7065362397974381493 -3466740370194715248 Filt/deduped BAM -3466740370194715248->4423581965112821269 -3466740370194715248->5156305966675235901 -172312884029166789 chip.bam2ta_ctl 3023572975222005771 TAG-ALIGN -172312884029166789->3023572975222005771 3023572975222005771->7065362397974381493 8403566597689694883 Filt/deduped BAM 8403566597689694883->-172312884029166789 8403566597689694883->5156305966675235901 -3591297700714321793 IDR Plot ppr -2335878599132190826->-3591297700714321793 9186448095401499489 IDR Peak ppr -2335878599132190826->9186448095401499489 9186448095401499489->6933222585586585930 1217002359981983525 IDR Plot rep1_vs_rep2 -7024516336959169787->1217002359981983525 4769384312033401248 IDR NPeak rep1_vs_rep2 -7024516336959169787->4769384312033401248 4769384312033401248->6933222585586585930 -67487294487003548 Overlap Peak rep1_vs_rep2 8332865048224899354->-67487294487003548 -67487294487003548->401042518776557202 -36581287313973174 Overlap Peak optimal 401042518776557202->-36581287313973174 -5867207270696232782 Overlap reproducibility 401042518776557202->-5867207270696232782 1929346143498874755 IDR Peak optimal 6933222585586585930->1929346143498874755 4741152846917946579 IDR reproducibility 6933222585586585930->4741152846917946579 -8350195670162648020 Overlap Peak ppr -6454760728757507633->-8350195670162648020 -8350195670162648020->401042518776557202 -1204712966428528841 JSD Plot 5156305966675235901->-1204712966428528841

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