File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF816GRP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF816GRP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF816GRP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF816GRP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF816GRP.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF287QCC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF287QCC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF287QCC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF287QCC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF287QCC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.497M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.497M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.497M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF816GRP.crop_101-2bp.nodup.pr1_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF816GRP.crop_101-2bp.nodup.pr1_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF816GRP.crop_101-2bp.nodup.pr1_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF816GRP.crop_101-2bp.nodup.pr1_x_ctl.pooled.230M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF816GRP.crop_101-2bp.nodup.pr2_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF816GRP.crop_101-2bp.nodup.pr2_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF816GRP.crop_101-2bp.nodup.pr2_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF816GRP.crop_101-2bp.nodup.pr2_x_ctl.pooled.230M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF287QCC.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF287QCC.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF287QCC.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF287QCC.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF287QCC.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF287QCC.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF287QCC.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF287QCC.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.497M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF816GRP.crop_101-2bp.nodup.pr1_x_ctl.pooled.230M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF816GRP.crop_101-2bp.nodup.pr2_x_ctl.pooled.230M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF816GRP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF816GRP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF816GRP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF816GRP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF816GRP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF816GRP.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF287QCC.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF287QCC.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF287QCC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF287QCC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF287QCC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF287QCC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF287QCC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5ed61f00-67a6-445d-a654-54636e45d56f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF287QCC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF816GRP.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/7b5e35ce-e239-45fa-9f2c-71dc6f1173d9/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.497M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.497M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF816GRP.crop_101-2bp.nodup_x_ctl.pooled.230M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9b9ce36f-7634-46fa-9086-f0b59955e949/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF287QCC.crop_101-2bp.nodup_x_ctl.pooled.267M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 700129688653561603 chip.macs2_signal_track_pooled 1766050219669416067 BW FC 700129688653561603->1766050219669416067 -2572172224720419257 BW p-val 700129688653561603->-2572172224720419257 -3663391307963217844 chip.call_peak_pooled 5635402217149037860 Peak (bfilt) -3663391307963217844->5635402217149037860 930760875769401761 Peak -3663391307963217844->930760875769401761 7414781074684858759 chip.idr_ppr 930760875769401761->7414781074684858759 -9006652493984520506 chip.idr 930760875769401761->-9006652493984520506 6930802008986435351 chip.overlap 930760875769401761->6930802008986435351 3982904107657063072 chip.overlap_ppr 930760875769401761->3982904107657063072 -5562256809488452842 chip.pool_ta -5614186903648895293 TAG-ALIGN -5562256809488452842->-5614186903648895293 -5614186903648895293->700129688653561603 -5614186903648895293->-3663391307963217844 -5614186903648895293->7414781074684858759 -5614186903648895293->-9006652493984520506 -5614186903648895293->6930802008986435351 -5614186903648895293->3982904107657063072 -6529886689079249437 chip.call_peak -6179254512424562577 Peak (bfilt) -6529886689079249437->-6179254512424562577 -1691652168457624987 Peak -6529886689079249437->-1691652168457624987 -1691652168457624987->-9006652493984520506 -1691652168457624987->6930802008986435351 4175581510676257090 chip.reproducibility_overlap -1691652168457624987->4175581510676257090 -5045627586267854816 chip.reproducibility_idr -1691652168457624987->-5045627586267854816 -5279559779288081484 chip.bam2ta 7803680618795830132 TAG-ALIGN -5279559779288081484->7803680618795830132 7803680618795830132->-5562256809488452842 7803680618795830132->-6529886689079249437 3771137774094030091 chip.macs2_signal_track 7803680618795830132->3771137774094030091 7803680618795830132->7414781074684858759 7803680618795830132->4175581510676257090 7803680618795830132->-5045627586267854816 7803680618795830132->3982904107657063072 1145021993261174831 chip.filter -1398958579817819853 SAMstats QC 1145021993261174831->-1398958579817819853 352608656891156585 Filt/deduped BAM 1145021993261174831->352608656891156585 6345580265578856195 LibCmplx QC 1145021993261174831->6345580265578856195 352608656891156585->-5279559779288081484 2981233756555386813 chip.jsd 352608656891156585->2981233756555386813 -6147354170491340559 chip.align 6888547323664626454 SAMstats QC -6147354170491340559->6888547323664626454 6722925392723846400 BAM -6147354170491340559->6722925392723846400 6722925392723846400->1145021993261174831 -2481088969735668739 chip.xcor -5874331444609901109 XCOR Plot -2481088969735668739->-5874331444609901109 -432973598467235266 BW FC 3771137774094030091->-432973598467235266 5987661534395439141 BW p-val 3771137774094030091->5987661534395439141 -5578973104133888931 FASTQ R1 (1) -5578973104133888931->-6147354170491340559 -5578973104133888931->-2481088969735668739 -7169103559573642862 FASTQ R2 (1) -7169103559573642862->-6147354170491340559 3533060428241765102 chip.call_peak -3125676425296154303 Peak (bfilt) 3533060428241765102->-3125676425296154303 805532716709382541 Peak 3533060428241765102->805532716709382541 805532716709382541->-9006652493984520506 805532716709382541->6930802008986435351 805532716709382541->4175581510676257090 805532716709382541->-5045627586267854816 -8295900794126182289 chip.bam2ta 8561859006617716874 TAG-ALIGN -8295900794126182289->8561859006617716874 8561859006617716874->-5562256809488452842 8561859006617716874->3533060428241765102 8347200720926970816 chip.macs2_signal_track 8561859006617716874->8347200720926970816 8561859006617716874->7414781074684858759 8561859006617716874->4175581510676257090 8561859006617716874->-5045627586267854816 8561859006617716874->3982904107657063072 -4223636689285599629 chip.filter 365052563682833633 SAMstats QC -4223636689285599629->365052563682833633 2395507273743891391 Filt/deduped BAM -4223636689285599629->2395507273743891391 -5000217172931725181 LibCmplx QC -4223636689285599629->-5000217172931725181 2395507273743891391->-8295900794126182289 2395507273743891391->2981233756555386813 8744368682616967828 chip.align 6880307821027734851 SAMstats QC 8744368682616967828->6880307821027734851 4635495945832075247 BAM 8744368682616967828->4635495945832075247 4635495945832075247->-4223636689285599629 -2211685839153668366 chip.xcor -8359860220248173672 XCOR Plot -2211685839153668366->-8359860220248173672 -1337120493895383472 BW FC 8347200720926970816->-1337120493895383472 3685251488735214358 BW p-val 8347200720926970816->3685251488735214358 4689308524253715348 FASTQ R1 (1) 4689308524253715348->8744368682616967828 4689308524253715348->-2211685839153668366 1865314514481969514 FASTQ R2 (1) 1865314514481969514->8744368682616967828 -1847090958539038597 chip.pool_ta_ctl 4639004593917817492 TAG-ALIGN -1847090958539038597->4639004593917817492 4639004593917817492->700129688653561603 4639004593917817492->-3663391307963217844 4639004593917817492->-6529886689079249437 4639004593917817492->3771137774094030091 4639004593917817492->3533060428241765102 4639004593917817492->8347200720926970816 4639004593917817492->7414781074684858759 4639004593917817492->4175581510676257090 4639004593917817492->-5045627586267854816 4639004593917817492->3982904107657063072 -8758091845287299634 chip.bam2ta_ctl -2106346957338854087 TAG-ALIGN -8758091845287299634->-2106346957338854087 -2106346957338854087->-1847090958539038597 -1263570964097411769 Filt/deduped BAM -1263570964097411769->-8758091845287299634 -1263570964097411769->2981233756555386813 -8509789800168993441 chip.bam2ta_ctl -7187202849022616880 TAG-ALIGN -8509789800168993441->-7187202849022616880 -7187202849022616880->-1847090958539038597 5487912814729242926 Filt/deduped BAM 5487912814729242926->-8509789800168993441 5487912814729242926->2981233756555386813 7660542177939295204 chip.bam2ta_ctl -3689084868762505243 TAG-ALIGN 7660542177939295204->-3689084868762505243 -3689084868762505243->-1847090958539038597 -5459608200802345973 Filt/deduped BAM -5459608200802345973->7660542177939295204 -5459608200802345973->2981233756555386813 -7717876409760449601 chip.bam2ta_ctl -4752512901635733816 TAG-ALIGN -7717876409760449601->-4752512901635733816 -4752512901635733816->-1847090958539038597 5467793428745463636 Filt/deduped BAM 5467793428745463636->-7717876409760449601 5467793428745463636->2981233756555386813 8006683481215213631 chip.bam2ta_ctl 2312813677207744251 TAG-ALIGN 8006683481215213631->2312813677207744251 2312813677207744251->-1847090958539038597 -6000771677928202788 Filt/deduped BAM -6000771677928202788->8006683481215213631 -6000771677928202788->2981233756555386813 -5636164005587944215 chip.bam2ta_ctl -770469705832403265 TAG-ALIGN -5636164005587944215->-770469705832403265 -770469705832403265->-1847090958539038597 -5931253312325042907 Filt/deduped BAM -5931253312325042907->-5636164005587944215 -5931253312325042907->2981233756555386813 2557553100758725053 chip.bam2ta_ctl -3830706902890279388 TAG-ALIGN 2557553100758725053->-3830706902890279388 -3830706902890279388->-1847090958539038597 -6426296734037980911 Filt/deduped BAM -6426296734037980911->2557553100758725053 -6426296734037980911->2981233756555386813 -1860795624757106346 chip.bam2ta_ctl 8167193601516722024 TAG-ALIGN -1860795624757106346->8167193601516722024 8167193601516722024->-1847090958539038597 7442973975133618385 Filt/deduped BAM 7442973975133618385->-1860795624757106346 7442973975133618385->2981233756555386813 -6738513548236643754 chip.bam2ta_ctl -6317490691091743708 TAG-ALIGN -6738513548236643754->-6317490691091743708 -6317490691091743708->-1847090958539038597 3996382501725775576 Filt/deduped BAM 3996382501725775576->-6738513548236643754 3996382501725775576->2981233756555386813 -8338124306572886480 chip.bam2ta_ctl 8838909187414643996 TAG-ALIGN -8338124306572886480->8838909187414643996 8838909187414643996->-1847090958539038597 -5509421553659032667 Filt/deduped BAM -5509421553659032667->-8338124306572886480 -5509421553659032667->2981233756555386813 1967363688116154324 chip.bam2ta_ctl -6784760887933670209 TAG-ALIGN 1967363688116154324->-6784760887933670209 -6784760887933670209->-1847090958539038597 -5678275828098079979 Filt/deduped BAM -5678275828098079979->1967363688116154324 -5678275828098079979->2981233756555386813 5028954862623391567 chip.bam2ta_ctl 6128932497112187001 TAG-ALIGN 5028954862623391567->6128932497112187001 6128932497112187001->-1847090958539038597 7333189648746180603 Filt/deduped BAM 7333189648746180603->5028954862623391567 7333189648746180603->2981233756555386813 -9182244985041552551 chip.bam2ta_ctl 4766689498892369909 TAG-ALIGN -9182244985041552551->4766689498892369909 4766689498892369909->-1847090958539038597 -4887337509383019784 Filt/deduped BAM -4887337509383019784->-9182244985041552551 -4887337509383019784->2981233756555386813 -5851717864618651342 chip.bam2ta_ctl -1841147366057641963 TAG-ALIGN -5851717864618651342->-1841147366057641963 -1841147366057641963->-1847090958539038597 -9184808632817793544 Filt/deduped BAM -9184808632817793544->-5851717864618651342 -9184808632817793544->2981233756555386813 -4897982264109580724 chip.bam2ta_ctl 1187515516932750754 TAG-ALIGN -4897982264109580724->1187515516932750754 1187515516932750754->-1847090958539038597 567148920997549234 Filt/deduped BAM 567148920997549234->-4897982264109580724 567148920997549234->2981233756555386813 8070058896883102276 chip.bam2ta_ctl 1068566195448543435 TAG-ALIGN 8070058896883102276->1068566195448543435 1068566195448543435->-1847090958539038597 442427469723272002 Filt/deduped BAM 442427469723272002->8070058896883102276 442427469723272002->2981233756555386813 8615706130947459978 chip.bam2ta_ctl 3907510622977306991 TAG-ALIGN 8615706130947459978->3907510622977306991 3907510622977306991->-1847090958539038597 -249384602623267743 Filt/deduped BAM -249384602623267743->8615706130947459978 -249384602623267743->2981233756555386813 -2636753711668745520 chip.bam2ta_ctl -8233768205014902073 TAG-ALIGN -2636753711668745520->-8233768205014902073 -8233768205014902073->-1847090958539038597 3138112175425372492 Filt/deduped BAM 3138112175425372492->-2636753711668745520 3138112175425372492->2981233756555386813 -5152936041004293046 chip.bam2ta_ctl -4364126756960268669 TAG-ALIGN -5152936041004293046->-4364126756960268669 -4364126756960268669->-1847090958539038597 4079271095507097155 Filt/deduped BAM 4079271095507097155->-5152936041004293046 4079271095507097155->2981233756555386813 -538072056787464576 chip.bam2ta_ctl -2802267397789472484 TAG-ALIGN -538072056787464576->-2802267397789472484 -2802267397789472484->-1847090958539038597 3521772672483806387 Filt/deduped BAM 3521772672483806387->-538072056787464576 3521772672483806387->2981233756555386813 -7310160914571991468 chip.bam2ta_ctl -1946792309154264311 TAG-ALIGN -7310160914571991468->-1946792309154264311 -1946792309154264311->-1847090958539038597 -3689463675834620355 Filt/deduped BAM -3689463675834620355->-7310160914571991468 -3689463675834620355->2981233756555386813 2746103240865530153 chip.bam2ta_ctl 955130221091585419 TAG-ALIGN 2746103240865530153->955130221091585419 955130221091585419->-1847090958539038597 -6526522612526476263 Filt/deduped BAM -6526522612526476263->2746103240865530153 -6526522612526476263->2981233756555386813 8083902152896920030 chip.bam2ta_ctl -1226746312398140902 TAG-ALIGN 8083902152896920030->-1226746312398140902 -1226746312398140902->-1847090958539038597 -4883180167634484160 Filt/deduped BAM -4883180167634484160->8083902152896920030 -4883180167634484160->2981233756555386813 -5624493573440780087 chip.bam2ta_ctl 361644704040154036 TAG-ALIGN -5624493573440780087->361644704040154036 361644704040154036->-1847090958539038597 -9072387626995664818 Filt/deduped BAM -9072387626995664818->-5624493573440780087 -9072387626995664818->2981233756555386813 3414629082668814672 IDR Plot ppr 7414781074684858759->3414629082668814672 -3651955127351740597 IDR Peak ppr 7414781074684858759->-3651955127351740597 -3651955127351740597->-5045627586267854816 -8792540471420281999 IDR Plot rep1_vs_rep2 -9006652493984520506->-8792540471420281999 -5788522035164476282 IDR NPeak rep1_vs_rep2 -9006652493984520506->-5788522035164476282 -5788522035164476282->-5045627586267854816 7734449134136373167 Overlap Peak rep1_vs_rep2 6930802008986435351->7734449134136373167 7734449134136373167->4175581510676257090 6873756488477391914 Overlap Peak optimal 4175581510676257090->6873756488477391914 -1539409470652204576 Overlap reproducibility 4175581510676257090->-1539409470652204576 -1971015327997397800 IDR Peak optimal -5045627586267854816->-1971015327997397800 1286196640035552857 IDR reproducibility -5045627586267854816->1286196640035552857 -3270230512654302933 Overlap Peak ppr 3982904107657063072->-3270230512654302933 -3270230512654302933->4175581510676257090 5082976279511171253 JSD Plot 2981233756555386813->5082976279511171253

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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