File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF620OZQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF620OZQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF620OZQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF620OZQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF620OZQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF365YXG.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF365YXG.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF365YXG.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF365YXG.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF365YXG.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.513M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.513M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.513M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.513M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.513M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.513M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.513M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF620OZQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF620OZQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF620OZQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF620OZQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF620OZQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF620OZQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF365YXG.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF365YXG.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF365YXG.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF365YXG.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF365YXG.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF365YXG.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF620OZQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.513M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.513M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2617231077792238431 chip.macs2_signal_track_pooled 691800478946207181 BW FC 2617231077792238431->691800478946207181 8701652074873899175 BW p-val 2617231077792238431->8701652074873899175 -1347430604787302423 chip.call_peak_pooled -4704347891454650356 Peak (bfilt) -1347430604787302423->-4704347891454650356 1967072679943467140 Peak -1347430604787302423->1967072679943467140 7637007968331689906 chip.idr_ppr 1967072679943467140->7637007968331689906 -6951979381974376362 chip.idr 1967072679943467140->-6951979381974376362 794838657230329376 chip.overlap 1967072679943467140->794838657230329376 4377564506371384214 chip.overlap_ppr 1967072679943467140->4377564506371384214 -1258713162878306752 chip.pool_ta 3080597362814070237 TAG-ALIGN -1258713162878306752->3080597362814070237 3080597362814070237->2617231077792238431 3080597362814070237->-1347430604787302423 3080597362814070237->7637007968331689906 3080597362814070237->-6951979381974376362 3080597362814070237->794838657230329376 3080597362814070237->4377564506371384214 6951183217080629791 chip.call_peak -6411856156984681888 Peak (bfilt) 6951183217080629791->-6411856156984681888 8976485535834978591 Peak 6951183217080629791->8976485535834978591 8976485535834978591->-6951979381974376362 8976485535834978591->794838657230329376 7738364469826557170 chip.reproducibility_overlap 8976485535834978591->7738364469826557170 4208933742843266798 chip.reproducibility_idr 8976485535834978591->4208933742843266798 365861056146851301 chip.bam2ta -1133164471260274135 TAG-ALIGN 365861056146851301->-1133164471260274135 -1133164471260274135->-1258713162878306752 -1133164471260274135->6951183217080629791 135793050415251467 chip.macs2_signal_track -1133164471260274135->135793050415251467 -1133164471260274135->7637007968331689906 -1133164471260274135->7738364469826557170 -1133164471260274135->4208933742843266798 -1133164471260274135->4377564506371384214 2397580086395052239 chip.filter -3975650605037227164 SAMstats QC 2397580086395052239->-3975650605037227164 -5717186756408254453 Filt/deduped BAM 2397580086395052239->-5717186756408254453 -5329525670152450614 LibCmplx QC 2397580086395052239->-5329525670152450614 -5717186756408254453->365861056146851301 5414837123682311982 chip.jsd -5717186756408254453->5414837123682311982 -3065527262094207952 chip.jsd -5717186756408254453->-3065527262094207952 8767895826732255065 chip.align 2136482474565739093 SAMstats QC 8767895826732255065->2136482474565739093 -8967434310800522081 BAM 8767895826732255065->-8967434310800522081 -8967434310800522081->2397580086395052239 2894462176211092621 chip.xcor 6438820524705781993 XCOR Plot 2894462176211092621->6438820524705781993 7153268338496679892 BW FC 135793050415251467->7153268338496679892 2508774775179734064 BW p-val 135793050415251467->2508774775179734064 2969156356803993099 FASTQ R1 (1) 2969156356803993099->8767895826732255065 2969156356803993099->2894462176211092621 2979702672895790177 FASTQ R2 (1) 2979702672895790177->8767895826732255065 -387065593949229380 chip.call_peak -7879534501761967125 Peak (bfilt) -387065593949229380->-7879534501761967125 2760511260189435942 Peak -387065593949229380->2760511260189435942 2760511260189435942->-6951979381974376362 2760511260189435942->794838657230329376 2760511260189435942->7738364469826557170 2760511260189435942->4208933742843266798 242701409298152648 chip.bam2ta 6984477095045074249 TAG-ALIGN 242701409298152648->6984477095045074249 6984477095045074249->-1258713162878306752 6984477095045074249->-387065593949229380 -7949765465329658893 chip.macs2_signal_track 6984477095045074249->-7949765465329658893 6984477095045074249->7637007968331689906 6984477095045074249->7738364469826557170 6984477095045074249->4208933742843266798 6984477095045074249->4377564506371384214 -3487272681693328379 chip.filter -5772476540402926547 SAMstats QC -3487272681693328379->-5772476540402926547 -576827106291124663 Filt/deduped BAM -3487272681693328379->-576827106291124663 874289245139986656 LibCmplx QC -3487272681693328379->874289245139986656 -576827106291124663->242701409298152648 -576827106291124663->5414837123682311982 -576827106291124663->-3065527262094207952 -8143007003808964076 chip.align 7916190299009717482 SAMstats QC -8143007003808964076->7916190299009717482 3846060620387210317 BAM -8143007003808964076->3846060620387210317 3846060620387210317->-3487272681693328379 -5464006821377020548 chip.xcor -6812487246610599419 XCOR Plot -5464006821377020548->-6812487246610599419 -7761442990044463368 BW FC -7949765465329658893->-7761442990044463368 -1462821948484742695 BW p-val -7949765465329658893->-1462821948484742695 715448770099768609 FASTQ R1 (1) 715448770099768609->-8143007003808964076 715448770099768609->-5464006821377020548 8400678983908056920 FASTQ R2 (1) 8400678983908056920->-8143007003808964076 5607128129492335473 chip.pool_ta_ctl -6271108723691146665 TAG-ALIGN 5607128129492335473->-6271108723691146665 -6271108723691146665->2617231077792238431 -6271108723691146665->-1347430604787302423 -6271108723691146665->6951183217080629791 -6271108723691146665->135793050415251467 -6271108723691146665->-387065593949229380 -6271108723691146665->-7949765465329658893 -6271108723691146665->7637007968331689906 -6271108723691146665->7738364469826557170 -6271108723691146665->4208933742843266798 -6271108723691146665->4377564506371384214 -8496514373404958555 chip.bam2ta_ctl 7636991113525522357 TAG-ALIGN -8496514373404958555->7636991113525522357 7636991113525522357->5607128129492335473 5003121414356659716 Filt/deduped BAM 5003121414356659716->-8496514373404958555 5003121414356659716->5414837123682311982 5003121414356659716->-3065527262094207952 -3354529944298413280 chip.bam2ta_ctl -9161370786686931381 TAG-ALIGN -3354529944298413280->-9161370786686931381 -9161370786686931381->5607128129492335473 -8719542772914085804 Filt/deduped BAM -8719542772914085804->-3354529944298413280 -8719542772914085804->5414837123682311982 -8719542772914085804->-3065527262094207952 254561485051046577 chip.bam2ta_ctl 7921626828606223889 TAG-ALIGN 254561485051046577->7921626828606223889 7921626828606223889->5607128129492335473 8353462134332077810 Filt/deduped BAM 8353462134332077810->254561485051046577 8353462134332077810->5414837123682311982 8353462134332077810->-3065527262094207952 2301085696033163685 chip.bam2ta_ctl 9132737573510044337 TAG-ALIGN 2301085696033163685->9132737573510044337 9132737573510044337->5607128129492335473 -5478787593890003015 Filt/deduped BAM -5478787593890003015->2301085696033163685 -5478787593890003015->5414837123682311982 -5478787593890003015->-3065527262094207952 -7123562455674495725 chip.bam2ta_ctl -6188784238584395125 TAG-ALIGN -7123562455674495725->-6188784238584395125 -6188784238584395125->5607128129492335473 -7096958712448394356 Filt/deduped BAM -7096958712448394356->-7123562455674495725 -7096958712448394356->5414837123682311982 -7096958712448394356->-3065527262094207952 -3258637974723802298 chip.bam2ta_ctl -6266851105863247501 TAG-ALIGN -3258637974723802298->-6266851105863247501 -6266851105863247501->5607128129492335473 1136819541207073870 Filt/deduped BAM 1136819541207073870->-3258637974723802298 1136819541207073870->5414837123682311982 1136819541207073870->-3065527262094207952 -9098844349777029245 chip.bam2ta_ctl 6147965504417083828 TAG-ALIGN -9098844349777029245->6147965504417083828 6147965504417083828->5607128129492335473 -4092805342318988801 Filt/deduped BAM -4092805342318988801->-9098844349777029245 -4092805342318988801->5414837123682311982 -4092805342318988801->-3065527262094207952 4604300888597196997 chip.bam2ta_ctl 3926455463449014937 TAG-ALIGN 4604300888597196997->3926455463449014937 3926455463449014937->5607128129492335473 -9127190025347867411 Filt/deduped BAM -9127190025347867411->4604300888597196997 -9127190025347867411->5414837123682311982 -9127190025347867411->-3065527262094207952 -3000845112013588560 chip.bam2ta_ctl 9042497056583837994 TAG-ALIGN -3000845112013588560->9042497056583837994 9042497056583837994->5607128129492335473 -4040610304578905348 Filt/deduped BAM -4040610304578905348->-3000845112013588560 -4040610304578905348->5414837123682311982 -4040610304578905348->-3065527262094207952 337562269821688499 chip.bam2ta_ctl -125391523506476081 TAG-ALIGN 337562269821688499->-125391523506476081 -125391523506476081->5607128129492335473 1504821756659833175 Filt/deduped BAM 1504821756659833175->337562269821688499 1504821756659833175->5414837123682311982 1504821756659833175->-3065527262094207952 -5964647510900541576 chip.bam2ta_ctl -3810853172360254807 TAG-ALIGN -5964647510900541576->-3810853172360254807 -3810853172360254807->5607128129492335473 -6531679875799934261 Filt/deduped BAM -6531679875799934261->-5964647510900541576 -6531679875799934261->5414837123682311982 -6531679875799934261->-3065527262094207952 2618659240135160998 chip.bam2ta_ctl 4587315782965099744 TAG-ALIGN 2618659240135160998->4587315782965099744 4587315782965099744->5607128129492335473 -258753786011270955 Filt/deduped BAM -258753786011270955->2618659240135160998 -258753786011270955->5414837123682311982 -258753786011270955->-3065527262094207952 -3856538525323479452 chip.bam2ta_ctl -3041672024256746922 TAG-ALIGN -3856538525323479452->-3041672024256746922 -3041672024256746922->5607128129492335473 -1581292941416240176 Filt/deduped BAM -1581292941416240176->-3856538525323479452 -1581292941416240176->5414837123682311982 -1581292941416240176->-3065527262094207952 1866601277128470332 chip.bam2ta_ctl -1174693665906986574 TAG-ALIGN 1866601277128470332->-1174693665906986574 -1174693665906986574->5607128129492335473 7061865076199531595 Filt/deduped BAM 7061865076199531595->1866601277128470332 7061865076199531595->5414837123682311982 7061865076199531595->-3065527262094207952 -2186328761923817969 chip.bam2ta_ctl -7681492389009633334 TAG-ALIGN -2186328761923817969->-7681492389009633334 -7681492389009633334->5607128129492335473 8435749138663599217 Filt/deduped BAM 8435749138663599217->-2186328761923817969 8435749138663599217->5414837123682311982 8435749138663599217->-3065527262094207952 -3652493225739040029 chip.bam2ta_ctl -3209920997198212956 TAG-ALIGN -3652493225739040029->-3209920997198212956 -3209920997198212956->5607128129492335473 -8136632147301337592 Filt/deduped BAM -8136632147301337592->-3652493225739040029 -8136632147301337592->5414837123682311982 -8136632147301337592->-3065527262094207952 3946211219050044874 chip.bam2ta_ctl 9032343726813820930 TAG-ALIGN 3946211219050044874->9032343726813820930 9032343726813820930->5607128129492335473 -8010247045118539586 Filt/deduped BAM -8010247045118539586->3946211219050044874 -8010247045118539586->5414837123682311982 -8010247045118539586->-3065527262094207952 -8402156168491891888 chip.bam2ta_ctl 6223597117997613955 TAG-ALIGN -8402156168491891888->6223597117997613955 6223597117997613955->5607128129492335473 8971603416102646860 Filt/deduped BAM 8971603416102646860->-8402156168491891888 8971603416102646860->5414837123682311982 8971603416102646860->-3065527262094207952 -7779940616470652084 chip.bam2ta_ctl -6654142956810848268 TAG-ALIGN -7779940616470652084->-6654142956810848268 -6654142956810848268->5607128129492335473 -7734802406844237528 Filt/deduped BAM -7734802406844237528->-7779940616470652084 -7734802406844237528->5414837123682311982 -7734802406844237528->-3065527262094207952 -1733639305873217268 chip.bam2ta_ctl 7194364677832912379 TAG-ALIGN -1733639305873217268->7194364677832912379 7194364677832912379->5607128129492335473 -3252524710813552002 Filt/deduped BAM -3252524710813552002->-1733639305873217268 -3252524710813552002->5414837123682311982 -3252524710813552002->-3065527262094207952 -7386914242317237333 chip.bam2ta_ctl -392666533344461301 TAG-ALIGN -7386914242317237333->-392666533344461301 -392666533344461301->5607128129492335473 3120643152624774596 Filt/deduped BAM 3120643152624774596->-7386914242317237333 3120643152624774596->5414837123682311982 3120643152624774596->-3065527262094207952 -4512919915489833507 chip.bam2ta_ctl -7445605413532831307 TAG-ALIGN -4512919915489833507->-7445605413532831307 -7445605413532831307->5607128129492335473 -2613264811425578997 Filt/deduped BAM -2613264811425578997->-4512919915489833507 -2613264811425578997->5414837123682311982 -2613264811425578997->-3065527262094207952 7353489583376721464 chip.bam2ta_ctl 8683407131150630848 TAG-ALIGN 7353489583376721464->8683407131150630848 8683407131150630848->5607128129492335473 2439841058168024268 Filt/deduped BAM 2439841058168024268->7353489583376721464 2439841058168024268->5414837123682311982 2439841058168024268->-3065527262094207952 -8652569091529627694 chip.bam2ta_ctl 2106737194151018038 TAG-ALIGN -8652569091529627694->2106737194151018038 2106737194151018038->5607128129492335473 -1102037086993726089 Filt/deduped BAM -1102037086993726089->-8652569091529627694 -1102037086993726089->5414837123682311982 -1102037086993726089->-3065527262094207952 6237731545774799782 IDR Plot ppr 7637007968331689906->6237731545774799782 -2343515650806157644 IDR Peak ppr 7637007968331689906->-2343515650806157644 -2343515650806157644->4208933742843266798 8386000957283927529 IDR Plot rep1_vs_rep2 -6951979381974376362->8386000957283927529 -5828856154171321761 IDR NPeak rep1_vs_rep2 -6951979381974376362->-5828856154171321761 -5828856154171321761->4208933742843266798 -5442278719791094848 Overlap Peak rep1_vs_rep2 794838657230329376->-5442278719791094848 -5442278719791094848->7738364469826557170 2922365841648846745 Overlap Peak optimal 7738364469826557170->2922365841648846745 -5008975352620299437 Overlap reproducibility 7738364469826557170->-5008975352620299437 -9206550812503307897 IDR Peak optimal 4208933742843266798->-9206550812503307897 6169235545856660979 IDR reproducibility 4208933742843266798->6169235545856660979 -8329814187971890011 Overlap Peak ppr 4377564506371384214->-8329814187971890011 -8329814187971890011->7738364469826557170 7295170253273305162 JSD Plot 5414837123682311982->7295170253273305162 -3065527262094207952->7295170253273305162

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