File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF620OZQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF620OZQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF620OZQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF620OZQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF620OZQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF365YXG.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF365YXG.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF365YXG.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF365YXG.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF365YXG.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.513M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.513M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.513M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.513M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF620OZQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF620OZQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF620OZQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF620OZQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF620OZQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF620OZQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF620OZQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF620OZQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF365YXG.crop_101-2bp.nodup.pr1_x_ctl.pooled.227M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF365YXG.crop_101-2bp.nodup.pr2_x_ctl.pooled.227M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF365YXG.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF365YXG.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF365YXG.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF365YXG.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF365YXG.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF365YXG.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/a6ad62c1-bd91-4841-8565-33a641512757/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF620OZQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/38991fc0-7ab3-4c53-9c17-4b4e00abbe98/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.513M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.513M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF620OZQ.crop_101-2bp.nodup_x_ctl.pooled.285M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/cb05461f-75d6-47c4-b086-61db2f961f8d/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF365YXG.crop_101-2bp.nodup_x_ctl.pooled.227M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -1631171842504759421 chip.macs2_signal_track_pooled 6882295078944944088 BW FC -1631171842504759421->6882295078944944088 8308007993083618797 BW p-val -1631171842504759421->8308007993083618797 -3471184438970058075 chip.call_peak_pooled -3783306962012545215 Peak (bfilt) -3471184438970058075->-3783306962012545215 -7075688625927747885 Peak -3471184438970058075->-7075688625927747885 -2744486329851371077 chip.idr_ppr -7075688625927747885->-2744486329851371077 3413758220534697386 chip.idr -7075688625927747885->3413758220534697386 -5351627578351963953 chip.overlap -7075688625927747885->-5351627578351963953 -8896154793572081197 chip.overlap_ppr -7075688625927747885->-8896154793572081197 -6647484659024846899 chip.pool_ta 7546663137528467346 TAG-ALIGN -6647484659024846899->7546663137528467346 7546663137528467346->-1631171842504759421 7546663137528467346->-3471184438970058075 7546663137528467346->-2744486329851371077 7546663137528467346->3413758220534697386 7546663137528467346->-5351627578351963953 7546663137528467346->-8896154793572081197 -6577398336343904864 chip.call_peak 7265736245701133181 Peak (bfilt) -6577398336343904864->7265736245701133181 -729220988733482805 Peak -6577398336343904864->-729220988733482805 -729220988733482805->3413758220534697386 -729220988733482805->-5351627578351963953 1090598613363218417 chip.reproducibility_overlap -729220988733482805->1090598613363218417 -5249368287460134140 chip.reproducibility_idr -729220988733482805->-5249368287460134140 781201298559263628 chip.bam2ta -3129002553341891252 TAG-ALIGN 781201298559263628->-3129002553341891252 -3129002553341891252->-6647484659024846899 -3129002553341891252->-6577398336343904864 5571758135699704967 chip.macs2_signal_track -3129002553341891252->5571758135699704967 -3129002553341891252->-2744486329851371077 -3129002553341891252->1090598613363218417 -3129002553341891252->-5249368287460134140 -3129002553341891252->-8896154793572081197 -4181891372343367212 chip.filter -9086100206489496900 SAMstats QC -4181891372343367212->-9086100206489496900 -7458863488542701421 Filt/deduped BAM -4181891372343367212->-7458863488542701421 -4857899189071393971 LibCmplx QC -4181891372343367212->-4857899189071393971 -7458863488542701421->781201298559263628 -4468651093830074439 chip.jsd -7458863488542701421->-4468651093830074439 -1442600927639204744 chip.align 3072986980373064485 SAMstats QC -1442600927639204744->3072986980373064485 1058703592026071617 BAM -1442600927639204744->1058703592026071617 1058703592026071617->-4181891372343367212 6179767856082398921 chip.xcor 2141931229571633886 XCOR Plot 6179767856082398921->2141931229571633886 -2510680356846495178 BW FC 5571758135699704967->-2510680356846495178 -856368144756392865 BW p-val 5571758135699704967->-856368144756392865 -7918535221900703812 FASTQ R1 (1) -7918535221900703812->-1442600927639204744 -7918535221900703812->6179767856082398921 -8295638622017755899 FASTQ R2 (1) -8295638622017755899->-1442600927639204744 6542624803526593948 chip.call_peak 450189124555360113 Peak (bfilt) 6542624803526593948->450189124555360113 -2923777617930776560 Peak 6542624803526593948->-2923777617930776560 -2923777617930776560->3413758220534697386 -2923777617930776560->-5351627578351963953 -2923777617930776560->1090598613363218417 -2923777617930776560->-5249368287460134140 -2358343489914221038 chip.bam2ta -5192179253858619874 TAG-ALIGN -2358343489914221038->-5192179253858619874 -5192179253858619874->-6647484659024846899 -5192179253858619874->6542624803526593948 -5502221915082629241 chip.macs2_signal_track -5192179253858619874->-5502221915082629241 -5192179253858619874->-2744486329851371077 -5192179253858619874->1090598613363218417 -5192179253858619874->-5249368287460134140 -5192179253858619874->-8896154793572081197 -4047252057099266431 chip.filter 4120329183103594305 SAMstats QC -4047252057099266431->4120329183103594305 2617198057190164664 Filt/deduped BAM -4047252057099266431->2617198057190164664 2475480773411537655 LibCmplx QC -4047252057099266431->2475480773411537655 2617198057190164664->-2358343489914221038 2617198057190164664->-4468651093830074439 -2464708159714796431 chip.align -2351592185114133321 SAMstats QC -2464708159714796431->-2351592185114133321 407178813637103481 BAM -2464708159714796431->407178813637103481 407178813637103481->-4047252057099266431 -520737648541070624 chip.xcor 15925154416025070 XCOR Plot -520737648541070624->15925154416025070 -6557124826513946583 BW FC -5502221915082629241->-6557124826513946583 -4697674017092638552 BW p-val -5502221915082629241->-4697674017092638552 9017007000254755624 FASTQ R1 (1) 9017007000254755624->-2464708159714796431 9017007000254755624->-520737648541070624 -5279938840001131956 FASTQ R2 (1) -5279938840001131956->-2464708159714796431 1726035669201289836 chip.pool_ta_ctl 3635876347366578318 TAG-ALIGN 1726035669201289836->3635876347366578318 3635876347366578318->-1631171842504759421 3635876347366578318->-3471184438970058075 3635876347366578318->-6577398336343904864 3635876347366578318->5571758135699704967 3635876347366578318->6542624803526593948 3635876347366578318->-5502221915082629241 3635876347366578318->-2744486329851371077 3635876347366578318->1090598613363218417 3635876347366578318->-5249368287460134140 3635876347366578318->-8896154793572081197 -7890964213509260105 chip.bam2ta_ctl 4174621850767704017 TAG-ALIGN -7890964213509260105->4174621850767704017 4174621850767704017->1726035669201289836 -2881529770083913415 Filt/deduped BAM -2881529770083913415->-7890964213509260105 -2881529770083913415->-4468651093830074439 2773367509545183883 chip.bam2ta_ctl 5588496727410718592 TAG-ALIGN 2773367509545183883->5588496727410718592 5588496727410718592->1726035669201289836 6501488609098591009 Filt/deduped BAM 6501488609098591009->2773367509545183883 6501488609098591009->-4468651093830074439 1693563148864308731 chip.bam2ta_ctl 4057991817422559076 TAG-ALIGN 1693563148864308731->4057991817422559076 4057991817422559076->1726035669201289836 -868398496652569416 Filt/deduped BAM -868398496652569416->1693563148864308731 -868398496652569416->-4468651093830074439 8326312120625255285 chip.bam2ta_ctl 236398231614970852 TAG-ALIGN 8326312120625255285->236398231614970852 236398231614970852->1726035669201289836 7470415003847856181 Filt/deduped BAM 7470415003847856181->8326312120625255285 7470415003847856181->-4468651093830074439 -4798315368352723638 chip.bam2ta_ctl 7818292426018402483 TAG-ALIGN -4798315368352723638->7818292426018402483 7818292426018402483->1726035669201289836 6313582087547319810 Filt/deduped BAM 6313582087547319810->-4798315368352723638 6313582087547319810->-4468651093830074439 6586129207945690235 chip.bam2ta_ctl -5691083738880947759 TAG-ALIGN 6586129207945690235->-5691083738880947759 -5691083738880947759->1726035669201289836 5263370726424395882 Filt/deduped BAM 5263370726424395882->6586129207945690235 5263370726424395882->-4468651093830074439 -4992983172941743717 chip.bam2ta_ctl -1434513071795869282 TAG-ALIGN -4992983172941743717->-1434513071795869282 -1434513071795869282->1726035669201289836 -5603447636835382626 Filt/deduped BAM -5603447636835382626->-4992983172941743717 -5603447636835382626->-4468651093830074439 1438812883145712286 chip.bam2ta_ctl -6827837651582668204 TAG-ALIGN 1438812883145712286->-6827837651582668204 -6827837651582668204->1726035669201289836 6354112972517774590 Filt/deduped BAM 6354112972517774590->1438812883145712286 6354112972517774590->-4468651093830074439 5905344621437284792 chip.bam2ta_ctl 3858233719227898143 TAG-ALIGN 5905344621437284792->3858233719227898143 3858233719227898143->1726035669201289836 -7646212153151993968 Filt/deduped BAM -7646212153151993968->5905344621437284792 -7646212153151993968->-4468651093830074439 2053370761773335727 chip.bam2ta_ctl -8686223764324587474 TAG-ALIGN 2053370761773335727->-8686223764324587474 -8686223764324587474->1726035669201289836 832146305806326623 Filt/deduped BAM 832146305806326623->2053370761773335727 832146305806326623->-4468651093830074439 -5239929502756983711 chip.bam2ta_ctl -5559791114350865341 TAG-ALIGN -5239929502756983711->-5559791114350865341 -5559791114350865341->1726035669201289836 -4533456193222507617 Filt/deduped BAM -4533456193222507617->-5239929502756983711 -4533456193222507617->-4468651093830074439 8525491274177815253 chip.bam2ta_ctl -4678412162723759430 TAG-ALIGN 8525491274177815253->-4678412162723759430 -4678412162723759430->1726035669201289836 -7636008226953570689 Filt/deduped BAM -7636008226953570689->8525491274177815253 -7636008226953570689->-4468651093830074439 -3863879963149605637 chip.bam2ta_ctl 4554718770809598281 TAG-ALIGN -3863879963149605637->4554718770809598281 4554718770809598281->1726035669201289836 -8780051637442986735 Filt/deduped BAM -8780051637442986735->-3863879963149605637 -8780051637442986735->-4468651093830074439 5104729855625624265 chip.bam2ta_ctl -5213921646135508948 TAG-ALIGN 5104729855625624265->-5213921646135508948 -5213921646135508948->1726035669201289836 -7094044600396907693 Filt/deduped BAM -7094044600396907693->5104729855625624265 -7094044600396907693->-4468651093830074439 -2727464940788014075 chip.bam2ta_ctl -8279602939691052735 TAG-ALIGN -2727464940788014075->-8279602939691052735 -8279602939691052735->1726035669201289836 -5481531696761522447 Filt/deduped BAM -5481531696761522447->-2727464940788014075 -5481531696761522447->-4468651093830074439 3601857645490239582 chip.bam2ta_ctl 729262468665010255 TAG-ALIGN 3601857645490239582->729262468665010255 729262468665010255->1726035669201289836 -7969424199307651705 Filt/deduped BAM -7969424199307651705->3601857645490239582 -7969424199307651705->-4468651093830074439 -4701520268476867308 chip.bam2ta_ctl 7015934018852735404 TAG-ALIGN -4701520268476867308->7015934018852735404 7015934018852735404->1726035669201289836 -5432002722296528755 Filt/deduped BAM -5432002722296528755->-4701520268476867308 -5432002722296528755->-4468651093830074439 -761610573395233031 chip.bam2ta_ctl -6372919209700174238 TAG-ALIGN -761610573395233031->-6372919209700174238 -6372919209700174238->1726035669201289836 -2268024774956349347 Filt/deduped BAM -2268024774956349347->-761610573395233031 -2268024774956349347->-4468651093830074439 4310024159214885274 chip.bam2ta_ctl -1682342632832507734 TAG-ALIGN 4310024159214885274->-1682342632832507734 -1682342632832507734->1726035669201289836 5657751344792434683 Filt/deduped BAM 5657751344792434683->4310024159214885274 5657751344792434683->-4468651093830074439 -1365460024041143481 chip.bam2ta_ctl 1944702138155067805 TAG-ALIGN -1365460024041143481->1944702138155067805 1944702138155067805->1726035669201289836 3978487786899777044 Filt/deduped BAM 3978487786899777044->-1365460024041143481 3978487786899777044->-4468651093830074439 -5866753491674005579 chip.bam2ta_ctl 3835650387415248192 TAG-ALIGN -5866753491674005579->3835650387415248192 3835650387415248192->1726035669201289836 -1849826125498545472 Filt/deduped BAM -1849826125498545472->-5866753491674005579 -1849826125498545472->-4468651093830074439 5140968215352109161 chip.bam2ta_ctl -2157586332408284478 TAG-ALIGN 5140968215352109161->-2157586332408284478 -2157586332408284478->1726035669201289836 -7492971806747366095 Filt/deduped BAM -7492971806747366095->5140968215352109161 -7492971806747366095->-4468651093830074439 -6422934382174068583 chip.bam2ta_ctl 5218253063429282861 TAG-ALIGN -6422934382174068583->5218253063429282861 5218253063429282861->1726035669201289836 9024511814142488321 Filt/deduped BAM 9024511814142488321->-6422934382174068583 9024511814142488321->-4468651093830074439 -7390481811579523168 chip.bam2ta_ctl -3148583017459894945 TAG-ALIGN -7390481811579523168->-3148583017459894945 -3148583017459894945->1726035669201289836 -449990447531463979 Filt/deduped BAM -449990447531463979->-7390481811579523168 -449990447531463979->-4468651093830074439 3153934939209591123 IDR Plot ppr -2744486329851371077->3153934939209591123 -5426712170446507284 IDR Peak ppr -2744486329851371077->-5426712170446507284 -5426712170446507284->-5249368287460134140 -6273672885183409321 IDR Plot rep1_vs_rep2 3413758220534697386->-6273672885183409321 -7089125842738870463 IDR NPeak rep1_vs_rep2 3413758220534697386->-7089125842738870463 -7089125842738870463->-5249368287460134140 2580209319467253980 Overlap Peak rep1_vs_rep2 -5351627578351963953->2580209319467253980 2580209319467253980->1090598613363218417 -1048967167879789587 Overlap Peak optimal 1090598613363218417->-1048967167879789587 2386828993683798874 Overlap reproducibility 1090598613363218417->2386828993683798874 -2339989935197731513 IDR Peak optimal -5249368287460134140->-2339989935197731513 -3149391215828936369 IDR reproducibility -5249368287460134140->-3149391215828936369 4929565802793458974 Overlap Peak ppr -8896154793572081197->4929565802793458974 4929565802793458974->1090598613363218417 8069570624816692881 JSD Plot -4468651093830074439->8069570624816692881

UCSC browser tracks

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