File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2bbc1e7f-3933-4c02-8ec9-ede594314af5/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF376ORK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF376ORK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF376ORK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF376ORK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF376ORK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF182GEK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF182GEK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF182GEK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF182GEK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF182GEK.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.346M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.346M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.346M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF376ORK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF376ORK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF376ORK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF376ORK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF376ORK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF376ORK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF376ORK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF376ORK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF182GEK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF182GEK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF182GEK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF182GEK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF182GEK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF182GEK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF182GEK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF182GEK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.346M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF376ORK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF376ORK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF376ORK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF376ORK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF376ORK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF376ORK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF376ORK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF376ORK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF182GEK.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF182GEK.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF182GEK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF182GEK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF182GEK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF182GEK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF182GEK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF182GEK.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF376ORK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.346M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.346M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF376ORK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c100e3ca-5788-4c36-9bd4-85d5c20f0cdb/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF182GEK.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 2349547132175891040 chip.macs2_signal_track_pooled 1352085314153129974 BW FC 2349547132175891040->1352085314153129974 3506217273818774720 BW p-val 2349547132175891040->3506217273818774720 -3431636821918615923 chip.call_peak_pooled -4124393918892087141 Peak (bfilt) -3431636821918615923->-4124393918892087141 -1373019028701253786 Peak -3431636821918615923->-1373019028701253786 9115988453586208433 chip.idr_ppr -1373019028701253786->9115988453586208433 312908615316890959 chip.idr -1373019028701253786->312908615316890959 7567272359793681510 chip.overlap -1373019028701253786->7567272359793681510 9214272519094648134 chip.overlap_ppr -1373019028701253786->9214272519094648134 5576872546778048412 chip.pool_ta -1967861665903875333 TAG-ALIGN 5576872546778048412->-1967861665903875333 -1967861665903875333->2349547132175891040 -1967861665903875333->-3431636821918615923 -1967861665903875333->9115988453586208433 -1967861665903875333->312908615316890959 -1967861665903875333->7567272359793681510 -1967861665903875333->9214272519094648134 1796076735754766452 chip.call_peak 3811300051769839036 Peak (bfilt) 1796076735754766452->3811300051769839036 -2097618187958517951 Peak 1796076735754766452->-2097618187958517951 -2097618187958517951->312908615316890959 -2097618187958517951->7567272359793681510 -4796667600344817193 chip.reproducibility_overlap -2097618187958517951->-4796667600344817193 -3329139666799274106 chip.reproducibility_idr -2097618187958517951->-3329139666799274106 2628699547454801384 chip.bam2ta 6084331829522760575 TAG-ALIGN 2628699547454801384->6084331829522760575 6084331829522760575->5576872546778048412 6084331829522760575->1796076735754766452 2231955184972956471 chip.macs2_signal_track 6084331829522760575->2231955184972956471 6084331829522760575->9115988453586208433 6084331829522760575->-4796667600344817193 6084331829522760575->-3329139666799274106 6084331829522760575->9214272519094648134 5653108238936352014 chip.filter -7929613558291024378 SAMstats QC 5653108238936352014->-7929613558291024378 -1488892105694202384 Filt/deduped BAM 5653108238936352014->-1488892105694202384 6464593761190205315 LibCmplx QC 5653108238936352014->6464593761190205315 -1488892105694202384->2628699547454801384 -376509292439435240 chip.jsd -1488892105694202384->-376509292439435240 -9158948259677785757 chip.align 7798345238630511524 SAMstats QC -9158948259677785757->7798345238630511524 4657429953179215083 BAM -9158948259677785757->4657429953179215083 4657429953179215083->5653108238936352014 -4484124624594298700 chip.xcor 7022546296885954052 XCOR Plot -4484124624594298700->7022546296885954052 5688956391992687972 BW FC 2231955184972956471->5688956391992687972 6965271521913805825 BW p-val 2231955184972956471->6965271521913805825 8032598130136942221 FASTQ R1 (1) 8032598130136942221->-9158948259677785757 8032598130136942221->-4484124624594298700 -2745803705048699791 FASTQ R2 (1) -2745803705048699791->-9158948259677785757 8032770390573286824 chip.call_peak -4010700380285828922 Peak (bfilt) 8032770390573286824->-4010700380285828922 -6945125516857538958 Peak 8032770390573286824->-6945125516857538958 -6945125516857538958->312908615316890959 -6945125516857538958->7567272359793681510 -6945125516857538958->-4796667600344817193 -6945125516857538958->-3329139666799274106 5650639238313324758 chip.bam2ta 1435889231692867921 TAG-ALIGN 5650639238313324758->1435889231692867921 1435889231692867921->5576872546778048412 1435889231692867921->8032770390573286824 -7514550989350914670 chip.macs2_signal_track 1435889231692867921->-7514550989350914670 1435889231692867921->9115988453586208433 1435889231692867921->-4796667600344817193 1435889231692867921->-3329139666799274106 1435889231692867921->9214272519094648134 -8724889445168327228 chip.filter 101816187492610685 SAMstats QC -8724889445168327228->101816187492610685 -6790865678293318177 Filt/deduped BAM -8724889445168327228->-6790865678293318177 7927306928415027765 LibCmplx QC -8724889445168327228->7927306928415027765 -6790865678293318177->5650639238313324758 -6790865678293318177->-376509292439435240 -5727723983378820084 chip.align 6724888631308912945 SAMstats QC -5727723983378820084->6724888631308912945 7489970721444333420 BAM -5727723983378820084->7489970721444333420 7489970721444333420->-8724889445168327228 1557606909753749389 chip.xcor -4851358618301436068 XCOR Plot 1557606909753749389->-4851358618301436068 7207907790354878130 BW FC -7514550989350914670->7207907790354878130 7020147652877251521 BW p-val -7514550989350914670->7020147652877251521 -3194450239564323123 FASTQ R1 (1) -3194450239564323123->-5727723983378820084 -3194450239564323123->1557606909753749389 8458588823557212551 FASTQ R2 (1) 8458588823557212551->-5727723983378820084 6572732282248091040 chip.pool_ta_ctl 3382905590030653222 TAG-ALIGN 6572732282248091040->3382905590030653222 3382905590030653222->2349547132175891040 3382905590030653222->-3431636821918615923 3382905590030653222->1796076735754766452 3382905590030653222->2231955184972956471 3382905590030653222->8032770390573286824 3382905590030653222->-7514550989350914670 3382905590030653222->9115988453586208433 3382905590030653222->-4796667600344817193 3382905590030653222->-3329139666799274106 3382905590030653222->9214272519094648134 8566403373498299465 chip.bam2ta_ctl -8158338385705367469 TAG-ALIGN 8566403373498299465->-8158338385705367469 -8158338385705367469->6572732282248091040 8153616629592155475 Filt/deduped BAM 8153616629592155475->8566403373498299465 8153616629592155475->-376509292439435240 2977743237396020166 chip.bam2ta_ctl -7156955550858991788 TAG-ALIGN 2977743237396020166->-7156955550858991788 -7156955550858991788->6572732282248091040 -8093134634074764346 Filt/deduped BAM -8093134634074764346->2977743237396020166 -8093134634074764346->-376509292439435240 -1528783281544999501 chip.bam2ta_ctl -2180457961490384347 TAG-ALIGN -1528783281544999501->-2180457961490384347 -2180457961490384347->6572732282248091040 3695866643195856717 Filt/deduped BAM 3695866643195856717->-1528783281544999501 3695866643195856717->-376509292439435240 -3235292571329866122 chip.bam2ta_ctl -8900802298721797450 TAG-ALIGN -3235292571329866122->-8900802298721797450 -8900802298721797450->6572732282248091040 -4351175734012530602 Filt/deduped BAM -4351175734012530602->-3235292571329866122 -4351175734012530602->-376509292439435240 -7694077028325093204 chip.bam2ta_ctl 2794885309215586210 TAG-ALIGN -7694077028325093204->2794885309215586210 2794885309215586210->6572732282248091040 447329486748040273 Filt/deduped BAM 447329486748040273->-7694077028325093204 447329486748040273->-376509292439435240 -8434861734372025074 chip.bam2ta_ctl 4463427064477869295 TAG-ALIGN -8434861734372025074->4463427064477869295 4463427064477869295->6572732282248091040 -3176935542116631189 Filt/deduped BAM -3176935542116631189->-8434861734372025074 -3176935542116631189->-376509292439435240 -7125648509546917502 IDR Plot ppr 9115988453586208433->-7125648509546917502 2343173113649224439 IDR Peak ppr 9115988453586208433->2343173113649224439 2343173113649224439->-3329139666799274106 4072687777281600693 IDR Plot rep1_vs_rep2 312908615316890959->4072687777281600693 4698902786973730981 IDR NPeak rep1_vs_rep2 312908615316890959->4698902786973730981 4698902786973730981->-3329139666799274106 294515785390458022 Overlap Peak rep1_vs_rep2 7567272359793681510->294515785390458022 294515785390458022->-4796667600344817193 -5137015402463487249 Overlap Peak optimal -4796667600344817193->-5137015402463487249 6775932965131358442 Overlap reproducibility -4796667600344817193->6775932965131358442 2672042642806766630 IDR Peak optimal -3329139666799274106->2672042642806766630 -3788337008306807520 IDR reproducibility -3329139666799274106->-3788337008306807520 915278460530067544 Overlap Peak ppr 9214272519094648134->915278460530067544 915278460530067544->-4796667600344817193 -8305454956978555629 JSD Plot -376509292439435240->-8305454956978555629

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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