File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF632RPD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF632RPD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF632RPD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF632RPD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF632RPD.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF586VYV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF586VYV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF586VYV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF586VYV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF586VYV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.459M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.459M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.459M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.459M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.459M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.459M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.459M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF632RPD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF632RPD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF632RPD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF632RPD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF632RPD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF632RPD.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF586VYV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF586VYV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF586VYV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF586VYV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF586VYV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF586VYV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF632RPD.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.459M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.459M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -513823312443068933 chip.macs2_signal_track_pooled 3614873622707131059 BW FC -513823312443068933->3614873622707131059 4673678512411348959 BW p-val -513823312443068933->4673678512411348959 -5483628988115895225 chip.call_peak_pooled 2818274826702242909 Peak (bfilt) -5483628988115895225->2818274826702242909 6051554559699273299 Peak -5483628988115895225->6051554559699273299 7100445997211454188 chip.idr_ppr 6051554559699273299->7100445997211454188 9122952157213187557 chip.idr 6051554559699273299->9122952157213187557 5506913824256083204 chip.overlap 6051554559699273299->5506913824256083204 5714896217051109969 chip.overlap_ppr 6051554559699273299->5714896217051109969 6432926514656158993 chip.pool_ta 6557362224079503315 TAG-ALIGN 6432926514656158993->6557362224079503315 6557362224079503315->-513823312443068933 6557362224079503315->-5483628988115895225 6557362224079503315->7100445997211454188 6557362224079503315->9122952157213187557 6557362224079503315->5506913824256083204 6557362224079503315->5714896217051109969 1962419000865228167 chip.call_peak 6185496316173710808 Peak (bfilt) 1962419000865228167->6185496316173710808 6201900225377229669 Peak 1962419000865228167->6201900225377229669 6201900225377229669->9122952157213187557 6201900225377229669->5506913824256083204 -5240194904300807439 chip.reproducibility_overlap 6201900225377229669->-5240194904300807439 -6770588974776865468 chip.reproducibility_idr 6201900225377229669->-6770588974776865468 -5371437248358568542 chip.bam2ta 6509992134379331291 TAG-ALIGN -5371437248358568542->6509992134379331291 6509992134379331291->6432926514656158993 6509992134379331291->1962419000865228167 -5754921936584573089 chip.macs2_signal_track 6509992134379331291->-5754921936584573089 6509992134379331291->7100445997211454188 6509992134379331291->-5240194904300807439 6509992134379331291->-6770588974776865468 6509992134379331291->5714896217051109969 5372553392462602556 chip.filter -8411538784551534562 SAMstats QC 5372553392462602556->-8411538784551534562 8767274940645660431 Filt/deduped BAM 5372553392462602556->8767274940645660431 4233278001699243655 LibCmplx QC 5372553392462602556->4233278001699243655 8767274940645660431->-5371437248358568542 9052363232598638393 chip.jsd 8767274940645660431->9052363232598638393 -1745917610284354004 chip.align 9185216274111831423 SAMstats QC -1745917610284354004->9185216274111831423 5965215100276166650 BAM -1745917610284354004->5965215100276166650 5965215100276166650->5372553392462602556 -5337044638452184348 chip.xcor 5942483059781085022 XCOR Plot -5337044638452184348->5942483059781085022 6211314961639590752 BW FC -5754921936584573089->6211314961639590752 -8427920965325518026 BW p-val -5754921936584573089->-8427920965325518026 1885628795163122686 FASTQ R1 (1) 1885628795163122686->-1745917610284354004 1885628795163122686->-5337044638452184348 -6569772711185143235 FASTQ R2 (1) -6569772711185143235->-1745917610284354004 5549858005691162103 chip.call_peak -4375636429460639879 Peak (bfilt) 5549858005691162103->-4375636429460639879 1760240958681998121 Peak 5549858005691162103->1760240958681998121 1760240958681998121->9122952157213187557 1760240958681998121->5506913824256083204 1760240958681998121->-5240194904300807439 1760240958681998121->-6770588974776865468 1661856396535876631 chip.bam2ta 9160358180334554087 TAG-ALIGN 1661856396535876631->9160358180334554087 9160358180334554087->6432926514656158993 9160358180334554087->5549858005691162103 -1295647334400742235 chip.macs2_signal_track 9160358180334554087->-1295647334400742235 9160358180334554087->7100445997211454188 9160358180334554087->-5240194904300807439 9160358180334554087->-6770588974776865468 9160358180334554087->5714896217051109969 1394349019810510890 chip.filter -5201312563836395983 SAMstats QC 1394349019810510890->-5201312563836395983 2207321386755389549 Filt/deduped BAM 1394349019810510890->2207321386755389549 -3116117021362267139 LibCmplx QC 1394349019810510890->-3116117021362267139 2207321386755389549->1661856396535876631 2207321386755389549->9052363232598638393 7109468426240317044 chip.align 4048987877799385 SAMstats QC 7109468426240317044->4048987877799385 3845783731719273301 BAM 7109468426240317044->3845783731719273301 3845783731719273301->1394349019810510890 -5859495768635832847 chip.xcor 5096279217392025212 XCOR Plot -5859495768635832847->5096279217392025212 4602242554933737175 BW FC -1295647334400742235->4602242554933737175 -5106465043989190587 BW p-val -1295647334400742235->-5106465043989190587 -1781067259608483168 FASTQ R1 (1) -1781067259608483168->7109468426240317044 -1781067259608483168->-5859495768635832847 5129589706922906722 FASTQ R2 (1) 5129589706922906722->7109468426240317044 -3843710614410799279 chip.pool_ta_ctl 31475967294920756 TAG-ALIGN -3843710614410799279->31475967294920756 31475967294920756->-513823312443068933 31475967294920756->-5483628988115895225 31475967294920756->1962419000865228167 31475967294920756->-5754921936584573089 31475967294920756->5549858005691162103 31475967294920756->-1295647334400742235 31475967294920756->7100445997211454188 31475967294920756->-5240194904300807439 31475967294920756->-6770588974776865468 31475967294920756->5714896217051109969 -1008250040392448561 chip.bam2ta_ctl -6129384769476529169 TAG-ALIGN -1008250040392448561->-6129384769476529169 -6129384769476529169->-3843710614410799279 1258268270966759572 Filt/deduped BAM 1258268270966759572->-1008250040392448561 1258268270966759572->9052363232598638393 -6803402336355902432 chip.bam2ta_ctl -8713270431594394754 TAG-ALIGN -6803402336355902432->-8713270431594394754 -8713270431594394754->-3843710614410799279 5165131016157610783 Filt/deduped BAM 5165131016157610783->-6803402336355902432 5165131016157610783->9052363232598638393 -917128767169264099 chip.bam2ta_ctl -7776598979216001022 TAG-ALIGN -917128767169264099->-7776598979216001022 -7776598979216001022->-3843710614410799279 -1034244220133289329 Filt/deduped BAM -1034244220133289329->-917128767169264099 -1034244220133289329->9052363232598638393 -7757389426199037150 chip.bam2ta_ctl -9130233497773560840 TAG-ALIGN -7757389426199037150->-9130233497773560840 -9130233497773560840->-3843710614410799279 6512789838524537489 Filt/deduped BAM 6512789838524537489->-7757389426199037150 6512789838524537489->9052363232598638393 -3362071631050952176 chip.bam2ta_ctl -2429461865096394234 TAG-ALIGN -3362071631050952176->-2429461865096394234 -2429461865096394234->-3843710614410799279 1717497655951389720 Filt/deduped BAM 1717497655951389720->-3362071631050952176 1717497655951389720->9052363232598638393 -8446457303529208307 chip.bam2ta_ctl -5929482855092650958 TAG-ALIGN -8446457303529208307->-5929482855092650958 -5929482855092650958->-3843710614410799279 -5320431359842839894 Filt/deduped BAM -5320431359842839894->-8446457303529208307 -5320431359842839894->9052363232598638393 -4997176778007280462 chip.bam2ta_ctl 2560973277853455393 TAG-ALIGN -4997176778007280462->2560973277853455393 2560973277853455393->-3843710614410799279 -9144718276524277931 Filt/deduped BAM -9144718276524277931->-4997176778007280462 -9144718276524277931->9052363232598638393 -6461761352943325912 chip.bam2ta_ctl 3385724734096138547 TAG-ALIGN -6461761352943325912->3385724734096138547 3385724734096138547->-3843710614410799279 -6795304145078035238 Filt/deduped BAM -6795304145078035238->-6461761352943325912 -6795304145078035238->9052363232598638393 -7018211458494731998 chip.bam2ta_ctl 5021249418612949484 TAG-ALIGN -7018211458494731998->5021249418612949484 5021249418612949484->-3843710614410799279 -30418354025826080 Filt/deduped BAM -30418354025826080->-7018211458494731998 -30418354025826080->9052363232598638393 6132402556975884370 chip.bam2ta_ctl -1536427625035092644 TAG-ALIGN 6132402556975884370->-1536427625035092644 -1536427625035092644->-3843710614410799279 4933914556971947267 Filt/deduped BAM 4933914556971947267->6132402556975884370 4933914556971947267->9052363232598638393 -472527401194104918 chip.bam2ta_ctl -2817549355331089969 TAG-ALIGN -472527401194104918->-2817549355331089969 -2817549355331089969->-3843710614410799279 -4491967656348990833 Filt/deduped BAM -4491967656348990833->-472527401194104918 -4491967656348990833->9052363232598638393 1006364155123075750 chip.bam2ta_ctl -5751955933308342812 TAG-ALIGN 1006364155123075750->-5751955933308342812 -5751955933308342812->-3843710614410799279 1418428276985900273 Filt/deduped BAM 1418428276985900273->1006364155123075750 1418428276985900273->9052363232598638393 -6596866569132802402 chip.bam2ta_ctl -6116457170380119621 TAG-ALIGN -6596866569132802402->-6116457170380119621 -6116457170380119621->-3843710614410799279 -1044352312059790387 Filt/deduped BAM -1044352312059790387->-6596866569132802402 -1044352312059790387->9052363232598638393 1143636984158655115 chip.bam2ta_ctl 9112993877262706069 TAG-ALIGN 1143636984158655115->9112993877262706069 9112993877262706069->-3843710614410799279 -5292675705414530279 Filt/deduped BAM -5292675705414530279->1143636984158655115 -5292675705414530279->9052363232598638393 -4165013711654136868 chip.bam2ta_ctl 4729164568113481382 TAG-ALIGN -4165013711654136868->4729164568113481382 4729164568113481382->-3843710614410799279 6269540865481187790 Filt/deduped BAM 6269540865481187790->-4165013711654136868 6269540865481187790->9052363232598638393 -2027550238723943737 chip.bam2ta_ctl 6208176673545356836 TAG-ALIGN -2027550238723943737->6208176673545356836 6208176673545356836->-3843710614410799279 -7265324286711450220 Filt/deduped BAM -7265324286711450220->-2027550238723943737 -7265324286711450220->9052363232598638393 334011459897870367 chip.bam2ta_ctl 1358578979937460379 TAG-ALIGN 334011459897870367->1358578979937460379 1358578979937460379->-3843710614410799279 4503487381318750008 Filt/deduped BAM 4503487381318750008->334011459897870367 4503487381318750008->9052363232598638393 -2984916312218588963 chip.bam2ta_ctl -2151129335926617962 TAG-ALIGN -2984916312218588963->-2151129335926617962 -2151129335926617962->-3843710614410799279 -8478552251638097710 Filt/deduped BAM -8478552251638097710->-2984916312218588963 -8478552251638097710->9052363232598638393 -8049613184029468909 chip.bam2ta_ctl -864069306765605913 TAG-ALIGN -8049613184029468909->-864069306765605913 -864069306765605913->-3843710614410799279 7081061857173290898 Filt/deduped BAM 7081061857173290898->-8049613184029468909 7081061857173290898->9052363232598638393 -5740699497933023156 chip.bam2ta_ctl 3307002845759105011 TAG-ALIGN -5740699497933023156->3307002845759105011 3307002845759105011->-3843710614410799279 -2466696506275758406 Filt/deduped BAM -2466696506275758406->-5740699497933023156 -2466696506275758406->9052363232598638393 -6616788609874283598 chip.bam2ta_ctl 5148048605550539972 TAG-ALIGN -6616788609874283598->5148048605550539972 5148048605550539972->-3843710614410799279 5270474886761466668 Filt/deduped BAM 5270474886761466668->-6616788609874283598 5270474886761466668->9052363232598638393 -5287753860534813167 chip.bam2ta_ctl -2702205096581834371 TAG-ALIGN -5287753860534813167->-2702205096581834371 -2702205096581834371->-3843710614410799279 -1898848411942372181 Filt/deduped BAM -1898848411942372181->-5287753860534813167 -1898848411942372181->9052363232598638393 -8932286263930409835 chip.bam2ta_ctl 6684103153901306596 TAG-ALIGN -8932286263930409835->6684103153901306596 6684103153901306596->-3843710614410799279 -5333258251292340771 Filt/deduped BAM -5333258251292340771->-8932286263930409835 -5333258251292340771->9052363232598638393 -6293596586548487722 chip.bam2ta_ctl -5940348557778989571 TAG-ALIGN -6293596586548487722->-5940348557778989571 -5940348557778989571->-3843710614410799279 -1204582497321263010 Filt/deduped BAM -1204582497321263010->-6293596586548487722 -1204582497321263010->9052363232598638393 -5863512481359812090 IDR Plot ppr 7100445997211454188->-5863512481359812090 -419218949454292879 IDR Peak ppr 7100445997211454188->-419218949454292879 -419218949454292879->-6770588974776865468 -9014192184012743349 IDR Plot rep1_vs_rep2 9122952157213187557->-9014192184012743349 2814765289334226692 IDR NPeak rep1_vs_rep2 9122952157213187557->2814765289334226692 2814765289334226692->-6770588974776865468 683381053499139521 Overlap Peak rep1_vs_rep2 5506913824256083204->683381053499139521 683381053499139521->-5240194904300807439 -6882425877465402010 Overlap Peak optimal -5240194904300807439->-6882425877465402010 1478402475333129308 Overlap reproducibility -5240194904300807439->1478402475333129308 -8409649918370872524 IDR Peak optimal -6770588974776865468->-8409649918370872524 1089109911129545114 IDR reproducibility -6770588974776865468->1089109911129545114 2654872012059342648 Overlap Peak ppr 5714896217051109969->2654872012059342648 2654872012059342648->-5240194904300807439 6730348501160683721 JSD Plot 9052363232598638393->6730348501160683721

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.fc.signal.bigwig?Expires=1601336161&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=Ase7BjXPBeY%2F%2Bur4wCwycQIxSSvuxIS55n9nW9%2FO1QplqvOWGaLFF%2FHf160Cmxtequ6wZBl8mTLjXt%2F8Ng4IoIdvX3x5MHEQ8N7Vn%2B7ltZGJa9dqgiDVSvIMKk8RQLZJzL3X66Dzd1zVy6TXWY%2B%2FUn4WATNDOOVeYHglKtnn1iIVutjiB08HSJzJ2LtlNzRmGjT4mhVpSxfRuPyNLwaRw2G0or4rIXJcBuJy3xVfzQZbFHRe1zsI3h%2BrR8APtBDTm2UAchjKn%2Bn5lA4FsrNSmROa5BeFsYsLafdYP%2BYRFgivmQzGscGW9tRNz62D3%2BrFdcu8O8I3yp1MeqEJmnOR9w%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.459M.pval.signal.bigwig?Expires=1601336161&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=EbIBNhjF4JZv%2FB9QO2n8nWg8kZqFrDqC47nfHCJtdGeNBt20qK9dXpFtODn2sxj%2BsjilmkQkgBTvy02M%2BO%2BD%2B3k%2FfAAR1TU4jsxwpL87sSdxpZ7ipjN90dGcqF2dv5h1kjwjjH01kr%2FZ0i62HqV9cvXLu4kWqlADTaxv2n3NMCXkSjE6MKK0WKlES233Jpke6BrJ%2FCbkDJk%2FxDtU418L%2FEmujjsLGjN5SLs43Dj2uW6CNKNsBNfbcsAeqEF4tTsyKwqqy590uuavyrB9eMC3G26aFnqRjMMI3RYf7PU3xMu1W91FUTTNs%2FZQ04u397EygjA5Ch4DZL6fglOyvML2IA%3D%3D"
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