File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF632RPD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF632RPD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF632RPD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF632RPD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF632RPD.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF586VYV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF586VYV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF586VYV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF586VYV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF586VYV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.459M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.459M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.459M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.459M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RPD.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RPD.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF632RPD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF632RPD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF632RPD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF632RPD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF632RPD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF632RPD.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586VYV.crop_101-2bp.nodup.pr1_x_ctl.pooled.235M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586VYV.crop_101-2bp.nodup.pr2_x_ctl.pooled.235M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF586VYV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF586VYV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF586VYV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF586VYV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF586VYV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF586VYV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF632RPD.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/5f4ee47c-db35-4dcf-9311-0dd51cd07813/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.459M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.459M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF632RPD.crop_101-2bp.nodup_x_ctl.pooled.224M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2702624778371036830 chip.macs2_signal_track_pooled 2002935469561082553 BW FC 2702624778371036830->2002935469561082553 -495476929144651474 BW p-val 2702624778371036830->-495476929144651474 3916394860249765837 chip.call_peak_pooled -1728651503667491435 Peak (bfilt) 3916394860249765837->-1728651503667491435 -7484596641484338676 Peak 3916394860249765837->-7484596641484338676 -4955415940999063540 chip.idr_ppr -7484596641484338676->-4955415940999063540 5325087894349583476 chip.idr -7484596641484338676->5325087894349583476 2580884068496932355 chip.overlap -7484596641484338676->2580884068496932355 4125698974665170405 chip.overlap_ppr -7484596641484338676->4125698974665170405 -5611980262619083231 chip.pool_ta -3845580946970904185 TAG-ALIGN -5611980262619083231->-3845580946970904185 -3845580946970904185->2702624778371036830 -3845580946970904185->3916394860249765837 -3845580946970904185->-4955415940999063540 -3845580946970904185->5325087894349583476 -3845580946970904185->2580884068496932355 -3845580946970904185->4125698974665170405 -4781595439217304442 chip.call_peak -7751765690916805627 Peak (bfilt) -4781595439217304442->-7751765690916805627 -3417131814045107807 Peak -4781595439217304442->-3417131814045107807 -3417131814045107807->5325087894349583476 -3417131814045107807->2580884068496932355 -1412234299880424245 chip.reproducibility_overlap -3417131814045107807->-1412234299880424245 -3588817410408840600 chip.reproducibility_idr -3417131814045107807->-3588817410408840600 -2041431874607618459 chip.bam2ta -4336349700763053780 TAG-ALIGN -2041431874607618459->-4336349700763053780 -4336349700763053780->-5611980262619083231 -4336349700763053780->-4781595439217304442 -539174218051949361 chip.macs2_signal_track -4336349700763053780->-539174218051949361 -4336349700763053780->-4955415940999063540 -4336349700763053780->-1412234299880424245 -4336349700763053780->-3588817410408840600 -4336349700763053780->4125698974665170405 7625135530002179656 chip.filter 6269295080650586090 SAMstats QC 7625135530002179656->6269295080650586090 -2469732639446911433 Filt/deduped BAM 7625135530002179656->-2469732639446911433 2625395204271861461 LibCmplx QC 7625135530002179656->2625395204271861461 -2469732639446911433->-2041431874607618459 -3943743907874830336 chip.jsd -2469732639446911433->-3943743907874830336 -4305619183196389774 chip.align -8624368697273216657 SAMstats QC -4305619183196389774->-8624368697273216657 4838325057936531947 BAM -4305619183196389774->4838325057936531947 4838325057936531947->7625135530002179656 -2965435170540721744 chip.xcor -5609162522226817483 XCOR Plot -2965435170540721744->-5609162522226817483 -5011839135543760785 BW FC -539174218051949361->-5011839135543760785 9123415100686553704 BW p-val -539174218051949361->9123415100686553704 -2513404926550827311 FASTQ R1 (1) -2513404926550827311->-4305619183196389774 -2513404926550827311->-2965435170540721744 -5704129480549211859 FASTQ R2 (1) -5704129480549211859->-4305619183196389774 -6724717276093259038 chip.call_peak 5138081365602588349 Peak (bfilt) -6724717276093259038->5138081365602588349 -2983194038643778865 Peak -6724717276093259038->-2983194038643778865 -2983194038643778865->5325087894349583476 -2983194038643778865->2580884068496932355 -2983194038643778865->-1412234299880424245 -2983194038643778865->-3588817410408840600 4661811141209735538 chip.bam2ta 5922666498655216465 TAG-ALIGN 4661811141209735538->5922666498655216465 5922666498655216465->-5611980262619083231 5922666498655216465->-6724717276093259038 -6006456667145307277 chip.macs2_signal_track 5922666498655216465->-6006456667145307277 5922666498655216465->-4955415940999063540 5922666498655216465->-1412234299880424245 5922666498655216465->-3588817410408840600 5922666498655216465->4125698974665170405 -7855738930994763854 chip.filter 627962200862277002 SAMstats QC -7855738930994763854->627962200862277002 -7710920782663870484 Filt/deduped BAM -7855738930994763854->-7710920782663870484 6972326942302461314 LibCmplx QC -7855738930994763854->6972326942302461314 -7710920782663870484->4661811141209735538 -7710920782663870484->-3943743907874830336 5011189004091420024 chip.align 690562957283352865 SAMstats QC 5011189004091420024->690562957283352865 6779172949626991322 BAM 5011189004091420024->6779172949626991322 6779172949626991322->-7855738930994763854 5584970076740165412 chip.xcor 7596722037618025691 XCOR Plot 5584970076740165412->7596722037618025691 -2953755010046209911 BW FC -6006456667145307277->-2953755010046209911 127512327920488087 BW p-val -6006456667145307277->127512327920488087 -8720510882222534604 FASTQ R1 (1) -8720510882222534604->5011189004091420024 -8720510882222534604->5584970076740165412 -7576421300760142430 FASTQ R2 (1) -7576421300760142430->5011189004091420024 2347958232996595656 chip.pool_ta_ctl 3677720712629687675 TAG-ALIGN 2347958232996595656->3677720712629687675 3677720712629687675->2702624778371036830 3677720712629687675->3916394860249765837 3677720712629687675->-4781595439217304442 3677720712629687675->-539174218051949361 3677720712629687675->-6724717276093259038 3677720712629687675->-6006456667145307277 3677720712629687675->-4955415940999063540 3677720712629687675->-1412234299880424245 3677720712629687675->-3588817410408840600 3677720712629687675->4125698974665170405 3599378883490764508 chip.bam2ta_ctl 3854930039437276947 TAG-ALIGN 3599378883490764508->3854930039437276947 3854930039437276947->2347958232996595656 7742450300076213434 Filt/deduped BAM 7742450300076213434->3599378883490764508 7742450300076213434->-3943743907874830336 -7571267534600093083 chip.bam2ta_ctl -1135851080711596874 TAG-ALIGN -7571267534600093083->-1135851080711596874 -1135851080711596874->2347958232996595656 -6951490624673944245 Filt/deduped BAM -6951490624673944245->-7571267534600093083 -6951490624673944245->-3943743907874830336 -827780579930877026 chip.bam2ta_ctl -4722838196410451263 TAG-ALIGN -827780579930877026->-4722838196410451263 -4722838196410451263->2347958232996595656 5796221720352516020 Filt/deduped BAM 5796221720352516020->-827780579930877026 5796221720352516020->-3943743907874830336 -2891802150849275910 chip.bam2ta_ctl -1835462656586360296 TAG-ALIGN -2891802150849275910->-1835462656586360296 -1835462656586360296->2347958232996595656 -218840881350701420 Filt/deduped BAM -218840881350701420->-2891802150849275910 -218840881350701420->-3943743907874830336 1444953946072799567 chip.bam2ta_ctl 3206885331383460885 TAG-ALIGN 1444953946072799567->3206885331383460885 3206885331383460885->2347958232996595656 -7684720789105139385 Filt/deduped BAM -7684720789105139385->1444953946072799567 -7684720789105139385->-3943743907874830336 8216468629999368061 chip.bam2ta_ctl 8760406191391282365 TAG-ALIGN 8216468629999368061->8760406191391282365 8760406191391282365->2347958232996595656 -8139138105904264910 Filt/deduped BAM -8139138105904264910->8216468629999368061 -8139138105904264910->-3943743907874830336 8771552655353995117 chip.bam2ta_ctl -5569119093008310577 TAG-ALIGN 8771552655353995117->-5569119093008310577 -5569119093008310577->2347958232996595656 1047346243945109705 Filt/deduped BAM 1047346243945109705->8771552655353995117 1047346243945109705->-3943743907874830336 1407344273539845173 chip.bam2ta_ctl -6243359382108191300 TAG-ALIGN 1407344273539845173->-6243359382108191300 -6243359382108191300->2347958232996595656 -2013644989618655813 Filt/deduped BAM -2013644989618655813->1407344273539845173 -2013644989618655813->-3943743907874830336 876391657242010354 chip.bam2ta_ctl 7616543966658524223 TAG-ALIGN 876391657242010354->7616543966658524223 7616543966658524223->2347958232996595656 4776515660598561200 Filt/deduped BAM 4776515660598561200->876391657242010354 4776515660598561200->-3943743907874830336 -2505201915299781995 chip.bam2ta_ctl -86517189965814235 TAG-ALIGN -2505201915299781995->-86517189965814235 -86517189965814235->2347958232996595656 229928439698680310 Filt/deduped BAM 229928439698680310->-2505201915299781995 229928439698680310->-3943743907874830336 -776245707007250080 chip.bam2ta_ctl -8104450893399345365 TAG-ALIGN -776245707007250080->-8104450893399345365 -8104450893399345365->2347958232996595656 -6909083346283402128 Filt/deduped BAM -6909083346283402128->-776245707007250080 -6909083346283402128->-3943743907874830336 -1499914604058817564 chip.bam2ta_ctl 7007949361569952163 TAG-ALIGN -1499914604058817564->7007949361569952163 7007949361569952163->2347958232996595656 9173138114535436767 Filt/deduped BAM 9173138114535436767->-1499914604058817564 9173138114535436767->-3943743907874830336 -4596266210225065013 chip.bam2ta_ctl 5899908354140041049 TAG-ALIGN -4596266210225065013->5899908354140041049 5899908354140041049->2347958232996595656 257737563480290151 Filt/deduped BAM 257737563480290151->-4596266210225065013 257737563480290151->-3943743907874830336 -5951526574942732136 chip.bam2ta_ctl 253470559504739280 TAG-ALIGN -5951526574942732136->253470559504739280 253470559504739280->2347958232996595656 -3406080204390205596 Filt/deduped BAM -3406080204390205596->-5951526574942732136 -3406080204390205596->-3943743907874830336 1251501652420429909 chip.bam2ta_ctl 1609577805313920681 TAG-ALIGN 1251501652420429909->1609577805313920681 1609577805313920681->2347958232996595656 -1734657261230264381 Filt/deduped BAM -1734657261230264381->1251501652420429909 -1734657261230264381->-3943743907874830336 2922183173943848027 chip.bam2ta_ctl 5522472952888787034 TAG-ALIGN 2922183173943848027->5522472952888787034 5522472952888787034->2347958232996595656 3133250588279945015 Filt/deduped BAM 3133250588279945015->2922183173943848027 3133250588279945015->-3943743907874830336 7282392465504983182 chip.bam2ta_ctl 1266215044160709098 TAG-ALIGN 7282392465504983182->1266215044160709098 1266215044160709098->2347958232996595656 451033331646348363 Filt/deduped BAM 451033331646348363->7282392465504983182 451033331646348363->-3943743907874830336 -3080461735421237439 chip.bam2ta_ctl 1649470521777795227 TAG-ALIGN -3080461735421237439->1649470521777795227 1649470521777795227->2347958232996595656 -4077680967135230556 Filt/deduped BAM -4077680967135230556->-3080461735421237439 -4077680967135230556->-3943743907874830336 -7542688748112131144 chip.bam2ta_ctl -1770099832158592624 TAG-ALIGN -7542688748112131144->-1770099832158592624 -1770099832158592624->2347958232996595656 6689275468169471061 Filt/deduped BAM 6689275468169471061->-7542688748112131144 6689275468169471061->-3943743907874830336 6986656902353840210 chip.bam2ta_ctl 1793972167973570767 TAG-ALIGN 6986656902353840210->1793972167973570767 1793972167973570767->2347958232996595656 303465970791902481 Filt/deduped BAM 303465970791902481->6986656902353840210 303465970791902481->-3943743907874830336 -2279267671510977424 chip.bam2ta_ctl 5892173309609957120 TAG-ALIGN -2279267671510977424->5892173309609957120 5892173309609957120->2347958232996595656 3710965784389979339 Filt/deduped BAM 3710965784389979339->-2279267671510977424 3710965784389979339->-3943743907874830336 3056982690669287777 chip.bam2ta_ctl -4909764181467190678 TAG-ALIGN 3056982690669287777->-4909764181467190678 -4909764181467190678->2347958232996595656 4196683399749538167 Filt/deduped BAM 4196683399749538167->3056982690669287777 4196683399749538167->-3943743907874830336 -4863352416423666716 chip.bam2ta_ctl -7068284304025988320 TAG-ALIGN -4863352416423666716->-7068284304025988320 -7068284304025988320->2347958232996595656 2841217163514991445 Filt/deduped BAM 2841217163514991445->-4863352416423666716 2841217163514991445->-3943743907874830336 8542702730813986157 chip.bam2ta_ctl 1567054643886997203 TAG-ALIGN 8542702730813986157->1567054643886997203 1567054643886997203->2347958232996595656 -4418806025890517374 Filt/deduped BAM -4418806025890517374->8542702730813986157 -4418806025890517374->-3943743907874830336 4284571794286275841 IDR Plot ppr -4955415940999063540->4284571794286275841 9005431631164517404 IDR Peak ppr -4955415940999063540->9005431631164517404 9005431631164517404->-3588817410408840600 -5497122864169402117 IDR Plot rep1_vs_rep2 5325087894349583476->-5497122864169402117 -4146576468885355989 IDR NPeak rep1_vs_rep2 5325087894349583476->-4146576468885355989 -4146576468885355989->-3588817410408840600 1277678181626330101 Overlap Peak rep1_vs_rep2 2580884068496932355->1277678181626330101 1277678181626330101->-1412234299880424245 9039040420642561130 Overlap Peak optimal -1412234299880424245->9039040420642561130 6333615299893417275 Overlap reproducibility -1412234299880424245->6333615299893417275 2899040165197232542 IDR Peak optimal -3588817410408840600->2899040165197232542 -548514772701572173 IDR reproducibility -3588817410408840600->-548514772701572173 6693020780611824914 Overlap Peak ppr 4125698974665170405->6693020780611824914 6693020780611824914->-1412234299880424245 -8885291535816276589 JSD Plot -3943743907874830336->-8885291535816276589

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF586VYV.crop_101-2bp.nodup_x_ctl.pooled.235M.fc.signal.bigwig?Expires=1601332262&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=GwcrbK%2BxB4lipVoz7oYigYU6F9OmaNidUIsm%2BQQ9hv8dAX45zgvgPkilQuZkHJ1GpmHIRNhjCBbG0i4RAIZsOASlRxwTKKvG%2FmskHOnenG7ZW3cFZ2HPIAn0BDw0F8AZbqOE9TiG9e5R2%2FM%2FEFEq10LSMY53NK6zn1XSSbAmHn7dfQi7BmXbwUczAhzdM%2B4g5tTauNMZYoFjijBpQJMC1mSs6JeYvskJUnwULs0WGoOF%2FU3%2BBnVJ%2BfBOP0TrG8d8icHfUQCLFFZT9SlkYYOBXdB1YSlZwIZk6UQjO5zqFxB%2FQE5mwjCy7HJ8Z84ajn3B9X%2BWG95is4CwOR1TEMcWNQ%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/05eedb46-55c3-47f0-99b5-7598b45b9e1f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.459M.pval.signal.bigwig?Expires=1601332262&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=Zc1Q3HYFL1Zs7YfSfxILtorhQrHm%2F2y%2FvIp7mWGAKOwq5CCl8qFWCxIGUmTm4O8Fofu2PtwQ95hcI3jA%2BFUnMGWD98pSzjQN4uPHC1x3k3unP2u2eCKiIJgR60JfROxtdHTyfXLH1qcIEt83SlEP4FtZqdRfl8GV0w6mcAI51CHdnoBtRh3b0AA5un2q3zTQJcONXUSLh2yf7p6t3Qz06OTRfFhGic9%2FgAGmQ9FPHs7EuO9BVJ55sRIFRxOZecPxG2HbC9Me6I%2B2ks6M0uHMgnpVQmfZwvd%2FgiolsanAlvU9NQez4ortwU0DYoyWUbFSUGI99Z3GEtqwd8Da4yk39g%3D%3D"
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