File table
Expand all    Collapse all
FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF099FNA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF099FNA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF099FNA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF099FNA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF099FNA.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF893AGO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF893AGO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF893AGO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF893AGO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF893AGO.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF099FNA.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF099FNA.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF099FNA.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF099FNA.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF099FNA.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF099FNA.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF099FNA.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF099FNA.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF893AGO.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF893AGO.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF893AGO.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF893AGO.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF893AGO.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF893AGO.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF893AGO.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF893AGO.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF099FNA.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF099FNA.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF099FNA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF099FNA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF099FNA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF099FNA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF099FNA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF099FNA.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF893AGO.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF893AGO.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF893AGO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF893AGO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF893AGO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF893AGO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF893AGO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF893AGO.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF099FNA.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 8171555643774386929 chip.macs2_signal_track_pooled 5830759459762238126 BW FC 8171555643774386929->5830759459762238126 7022191771656067731 BW p-val 8171555643774386929->7022191771656067731 -5694542779410620742 chip.call_peak_pooled 2932349423275781437 Peak (bfilt) -5694542779410620742->2932349423275781437 3739396846338464918 Peak -5694542779410620742->3739396846338464918 514525094901779575 chip.idr_ppr 3739396846338464918->514525094901779575 -8651601675630803309 chip.idr 3739396846338464918->-8651601675630803309 3065342358042522615 chip.overlap 3739396846338464918->3065342358042522615 -1447102806248281433 chip.overlap_ppr 3739396846338464918->-1447102806248281433 1315529988861299007 chip.pool_ta 1658430965186194526 TAG-ALIGN 1315529988861299007->1658430965186194526 1658430965186194526->8171555643774386929 1658430965186194526->-5694542779410620742 1658430965186194526->514525094901779575 1658430965186194526->-8651601675630803309 1658430965186194526->3065342358042522615 1658430965186194526->-1447102806248281433 -7588218960194721496 chip.call_peak -6331058520277195573 Peak (bfilt) -7588218960194721496->-6331058520277195573 4500900597777595709 Peak -7588218960194721496->4500900597777595709 4500900597777595709->-8651601675630803309 4500900597777595709->3065342358042522615 7321799100635299523 chip.reproducibility_overlap 4500900597777595709->7321799100635299523 2995809356791419599 chip.reproducibility_idr 4500900597777595709->2995809356791419599 8431591523661783356 chip.bam2ta 2790519063829334017 TAG-ALIGN 8431591523661783356->2790519063829334017 2790519063829334017->1315529988861299007 2790519063829334017->-7588218960194721496 -966641815237097554 chip.macs2_signal_track 2790519063829334017->-966641815237097554 2790519063829334017->514525094901779575 2790519063829334017->7321799100635299523 2790519063829334017->2995809356791419599 2790519063829334017->-1447102806248281433 4542976297894195392 chip.filter 7766924088164834267 SAMstats QC 4542976297894195392->7766924088164834267 855210206666701389 Filt/deduped BAM 4542976297894195392->855210206666701389 2447202720043897480 LibCmplx QC 4542976297894195392->2447202720043897480 855210206666701389->8431591523661783356 2352479772954141345 chip.jsd 855210206666701389->2352479772954141345 2441263252268273284 chip.align 4895636890266676251 SAMstats QC 2441263252268273284->4895636890266676251 22500596157440891 BAM 2441263252268273284->22500596157440891 22500596157440891->4542976297894195392 -4587902835868713745 chip.xcor 4316528210921304341 XCOR Plot -4587902835868713745->4316528210921304341 -5004312701259914645 BW FC -966641815237097554->-5004312701259914645 5002814277733018175 BW p-val -966641815237097554->5002814277733018175 8955472073232766294 FASTQ R1 (1) 8955472073232766294->2441263252268273284 8955472073232766294->-4587902835868713745 415998585508354156 FASTQ R2 (1) 415998585508354156->2441263252268273284 1914571031632639726 chip.call_peak 29256701525025260 Peak (bfilt) 1914571031632639726->29256701525025260 -5720588758385477048 Peak 1914571031632639726->-5720588758385477048 -5720588758385477048->-8651601675630803309 -5720588758385477048->3065342358042522615 -5720588758385477048->7321799100635299523 -5720588758385477048->2995809356791419599 1565464833988895131 chip.bam2ta 1176067209553034764 TAG-ALIGN 1565464833988895131->1176067209553034764 1176067209553034764->1315529988861299007 1176067209553034764->1914571031632639726 -8417495713413417748 chip.macs2_signal_track 1176067209553034764->-8417495713413417748 1176067209553034764->514525094901779575 1176067209553034764->7321799100635299523 1176067209553034764->2995809356791419599 1176067209553034764->-1447102806248281433 -2548677195844632489 chip.filter -4309565476649380599 SAMstats QC -2548677195844632489->-4309565476649380599 8523386196947677582 Filt/deduped BAM -2548677195844632489->8523386196947677582 4168007809539481835 LibCmplx QC -2548677195844632489->4168007809539481835 8523386196947677582->1565464833988895131 8523386196947677582->2352479772954141345 1954496405156433990 chip.align -2205177946592410201 SAMstats QC 1954496405156433990->-2205177946592410201 -5098808588671502063 BAM 1954496405156433990->-5098808588671502063 -5098808588671502063->-2548677195844632489 7579013958056173525 chip.xcor 4668277809042316952 XCOR Plot 7579013958056173525->4668277809042316952 5683162978400821879 BW FC -8417495713413417748->5683162978400821879 1364744661913878994 BW p-val -8417495713413417748->1364744661913878994 1948310401948720813 FASTQ R1 (1) 1948310401948720813->1954496405156433990 1948310401948720813->7579013958056173525 -1963267455949574730 FASTQ R2 (1) -1963267455949574730->1954496405156433990 -7749906090211496013 chip.pool_ta_ctl 1312910326808811034 TAG-ALIGN -7749906090211496013->1312910326808811034 1312910326808811034->8171555643774386929 1312910326808811034->-5694542779410620742 1312910326808811034->-7588218960194721496 1312910326808811034->-966641815237097554 1312910326808811034->1914571031632639726 1312910326808811034->-8417495713413417748 1312910326808811034->514525094901779575 1312910326808811034->7321799100635299523 1312910326808811034->2995809356791419599 1312910326808811034->-1447102806248281433 5407169163943712064 chip.bam2ta_ctl -806017137426124719 TAG-ALIGN 5407169163943712064->-806017137426124719 -806017137426124719->-7749906090211496013 -7934645371089056305 Filt/deduped BAM -7934645371089056305->5407169163943712064 -7934645371089056305->2352479772954141345 -8599016206033715531 chip.bam2ta_ctl 3471745137548504585 TAG-ALIGN -8599016206033715531->3471745137548504585 3471745137548504585->-7749906090211496013 -349044745835190371 Filt/deduped BAM -349044745835190371->-8599016206033715531 -349044745835190371->2352479772954141345 2680635288751639520 chip.bam2ta_ctl -2055769668514742245 TAG-ALIGN 2680635288751639520->-2055769668514742245 -2055769668514742245->-7749906090211496013 -7084707629392897601 Filt/deduped BAM -7084707629392897601->2680635288751639520 -7084707629392897601->2352479772954141345 -507501361902199294 chip.bam2ta_ctl 2255056656964852117 TAG-ALIGN -507501361902199294->2255056656964852117 2255056656964852117->-7749906090211496013 -5452898447584088100 Filt/deduped BAM -5452898447584088100->-507501361902199294 -5452898447584088100->2352479772954141345 9095305846458261282 chip.bam2ta_ctl 1466446981218471464 TAG-ALIGN 9095305846458261282->1466446981218471464 1466446981218471464->-7749906090211496013 154850651787733478 Filt/deduped BAM 154850651787733478->9095305846458261282 154850651787733478->2352479772954141345 -3681181463833781895 chip.bam2ta_ctl 5030413562850464441 TAG-ALIGN -3681181463833781895->5030413562850464441 5030413562850464441->-7749906090211496013 4254742991295904085 Filt/deduped BAM 4254742991295904085->-3681181463833781895 4254742991295904085->2352479772954141345 6093895084812735712 IDR Plot ppr 514525094901779575->6093895084812735712 4282888818245546550 IDR Peak ppr 514525094901779575->4282888818245546550 4282888818245546550->2995809356791419599 7775346686139603667 IDR Plot rep1_vs_rep2 -8651601675630803309->7775346686139603667 -8785578391544895007 IDR NPeak rep1_vs_rep2 -8651601675630803309->-8785578391544895007 -8785578391544895007->2995809356791419599 -2546836912041892134 Overlap Peak rep1_vs_rep2 3065342358042522615->-2546836912041892134 -2546836912041892134->7321799100635299523 -6911132574335686399 Overlap Peak optimal 7321799100635299523->-6911132574335686399 2202112310521758656 Overlap reproducibility 7321799100635299523->2202112310521758656 -1692535595149820905 IDR Peak optimal 2995809356791419599->-1692535595149820905 5211736502724645094 IDR reproducibility 2995809356791419599->5211736502724645094 -2174212934675375088 Overlap Peak ppr -1447102806248281433->-2174212934675375088 -2174212934675375088->7321799100635299523 2067778262662966922 JSD Plot 2352479772954141345->2067778262662966922

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
track type=bigWig name="MACS2 p-val (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig?Expires=1601331773&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=IVhQFU0i6uVqlewqCWCTITLw%2BTUIYNrN0XDGOncYP1AoOAt%2Fkvga1cNniT9vEd%2Fen6BXx5%2BZp3g4frIx1Vd2RWUZ%2FvMNdq4FaQ9CDaPhQTVYFNsVM7XPVsOtbgjDJDhkjbpK6c24pgdu4Et51t%2FcCO6OWYiWyitzfGPZF2S59ANADl223q%2B%2FDwyICzwC%2B35JREdn0x%2FBZaGYRrq86ib4GaQJ%2BRyp8OXDnIIDuf05rr41dZOWhP9ZK%2FmD1vmvOuRX7B37%2FExiNP3g%2FQdm8QCvlXg%2BW4CYxk7a2Mu2poXmPpHF3AxLWPkM%2FGs%2FtxolDL%2Bub5faVqF7NqpvmH2WoA%2B53g%3D%3D"
track type=bigWig name="MACS2 p-val (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.pval.signal.bigwig?Expires=1601331773&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=yxeZG8ByBQv2b9U50gUVJ4KFMWzN9dBodK0Zc0W%2F9Lr6K7zjXZZaTr01eGG4253h5gzqer7bCyq%2B4wnXsmWF9vu%2F1Ye3n5VD47RuD3Gq1rQGNBQTbInatmrjWK7NYHFPRUEhK%2B6vgZwl0D3QxWl92Up%2FUt0eSbVk5VJCtzkk7NOgXQYbNGIXQgoS6gxREUygzHYJmyZqywh98dPoSX2SGptLgtjQMHNBgPADdxBcx1thDd7wxBkKDsSH9ekFzwIQ4j6JEEmr2OLTzrPe5zC%2BfyGKv3IaPBfPlVkobugyt4K6Pic4g36%2ByZWOHYd0t8Myj0O6W1XEW%2BcUvucvR8g%2BEw%3D%3D"
track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF099FNA.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig?Expires=1601331774&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=TFx6unZJNit%2BJS3svUbY9rtnyGZ%2F0fO9D1FCsNBr%2BaxkyriSTZjtycDRsYraGC5w1UCDuIRVXhHIOdryxNPqpIOp2UBtSujQxkXAFUkjOEfZCiMg8rVRx9UuPGJFt44Q5ZQT%2BJ7tgUF2zQfXxLPnS%2BaC%2F2iDulQR0q71oVh8vA5R87ZRSgRESEQkRQFeD%2FHCbcbvz7XagUnGzWT9TVBETMmtle6nqqWeTWr5zx9hOJytbuI3BuggiGcJdpaFPRZa5LNFeWYVbEKUS64nwfKsNdZi%2FvoDAhCnq0aUPaFG%2BA7yRZhDrf6BCTqk3lOFjtc7Vcm4fbrn8YeMD7JcHFhi1A%3D%3D"
track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF893AGO.crop_101-2bp.nodup_x_ctl.pooled.271M.fc.signal.bigwig?Expires=1601331774&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=ojZ4Kj9nu5aJl26DT7%2FhxmjsTmke0xmh%2BUICROnylzwIR709HjXbalY2nzBRc%2B2QnnK29luUaOtnMAt4Kz3mHK0%2FVugt62CCsNMo2fO7j3LWKvLLIkFWTkGW%2FpS1CeFRFCNnXmDq3v26EE7lcD2vt2FYNtLRxNZLuqWk0zq%2BBXsAZa%2BXIcg%2BMBj6032bxzIAjijIL5QxMRGt0xaO9ezvKDFymI11K%2FLqg72j1QWYIfShXeisc3tNSj%2BmU2TOeE2ByAo4SvE6r8LmvdIzVSHe%2FSI1kq4IPhtsUlmeiGgHp5ZOIYzt9Kx600%2BAX3Mq%2BHbJ0qVQn95ou3yDA3D0BW8uxQ%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig?Expires=1601331774&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=zah3XMkwCpn6ycbH9i5koHE3qeENAkfw618%2FjgOLw0FV9X0j4eOIddSOlAsztBlnMQj0LjPSFKFTVJvjqZPS8K09CYPxe5eddDO1VAi7E0FbUOFQ2UUyVcxEPB3qjkhfADpVhDtp2C6t8jSZezvqNGElJ0Tm5wy5GHBLtk7cHYVDGxfhj%2BQDzi9wV1DPFLX6Q54KbMhXzfCGrwik%2FSXYm%2FqxBr3H7B8TGv2o8Vw1j8OUlHo2NcTXH%2FMx%2FcIvicLeWTg5x45D2vgCP7lw1ji7Y9EezY0a8hYobF1LQ6NrNehwmh4lGXOz2YkwNOpwLxudPaZqCz8c%2BDcfSDIgphAC1Q%3D%3D"
track type=bigWig name="MACS2 fc (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig?Expires=1601331774&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=yfjxD6V%2FT1zJ2ozuNFSmatlYZky6p9L5d16fVO%2F79WtPjDjrCCAgROoT4ooyfucf6nY69FH%2FcdoovS9TKdNzE4SWwVqs1WX95FssRZGSuxJi6T7CzTg8rPI0ksthQWKjk4y7ahZ%2BypXOd3KGow66ntACf0cS%2BpQM79rCGwfHowi67naMctKIfWKna1i2c%2Ftql0BbM%2B4P8wskAbK5vEDbOnHLhB1K%2FAZIGwAIIbhWiYG9GdlR9%2FgEUcypcS5BS%2BfrNeWFY3D%2F1pNX6OA9gSCFz%2FIpV3iWrfcltTLRZzVON24mUAnFdGxdFr9GCTHGAR4ChditMswOS3CfF2nacIbRRQ%3D%3D"
track type=bigBed name="Optimal IDR peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb?Expires=1601331781&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=ShsOXGn9jM%2BvIn99pGArPQcem0ALGCLm4JJgap6Okrx9wbwU9JCnWCtFHsthErPbiYwELnD0qulTXv3mAsAqleswZRq95N9jSJq9g3lwLpDF15lml6EIl4mR%2B9rW0bDvmzJNmpe%2FJR8YhVtw0fwHeKt%2BjWpUax1Wm0L0cbIkFKRXyEFczSkbdDAEw1%2FWuIzGbAOMMS%2FyFpCExyCC3tTRjqEuCtci%2BHWX%2FOoiHcqh2WUih6dk15pfkrU5xcSQIKn%2B%2B%2FCo3x4VCsddTqs1%2FYzSJSDCERL5Or%2BE28rhXaVUFBOhduEOCkFa2McPSQ0UETs0NbY7%2Fz7NLsQ%2B9QL4p3UCQw%3D%3D"
track type=bigBed name="Conservative IDR peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb?Expires=1601331781&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=cvujnMkXIzMTBIbaKC8t57HWfu4oqJheU34jdCMoL1ta4BWNLqdOhUw965nFB%2F55F8woHA3Z9ixeo%2Bg9FNiD96Vn3Y3tWirS6xyaiYXngDYFDYEI6iNuJ4CQDwEpLGn5hL3oyGPMvu7bhuq2WH2ML4cC6nHR2IIVzdKYFn6JFhJ7kj3CgcPrGJjBOhKA8n2Hbo5WieQvAHO7rvAYau2mcx9xYjb8O5bzw8uqtcy%2FRcKGuwfmZ00e57wprFq3yE55DvohJcaPlPzVznUmEKpXBxgP5CO%2BB3IUFbcQ2XNJ8yrCE5hJU90R%2FYXp6%2B7XnQfd6O4R98Am7A4zFwbNY%2FLWwA%3D%3D"
track type=bigBed name="Optimal overlap peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb?Expires=1601331782&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=CrcANbgJHz3Y898pN3d6lotAVvoQxYve91fT%2BIg8AGjYiyg40K647wqiKLJehvfuMWMHs24rd4HgGMIIX1Mfj%2FY4C9m3Za6RPKmByT4JIBnEr7GRTDqwKZvy8Y2EQU4kj7hr6zsAMOjvDx1NxfBGZtGglIibX9MqSBiDRGoAtG3OeME8xHuR1IHPVZRsNRU%2BmcHtgeIxgJ4w5AEV9YnMht2HfShbUks12ulCH5ZLsKukGhWq48MVRPJ7eRZOu4usGziuH5QjopWMHI6CS49hnH7sYPZ04M7j9AmoiSEqjMm3XCe80L74M7Kjy%2BuaX0Bd8zJ5uomyKwF0gBkc3CgSUg%3D%3D"
track type=bigBed name="Conservative overlap peak" priority=100 color=0,0,255 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/3f6e28f5-d8a1-435e-85eb-8be54e1d4da6/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb?Expires=1601331782&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=wOUVnjDNmpUUAlfXTDFgAv3s5%2B3a%2BCzTUaOYJyHlE6mEQOHI9NI2eNVznxLtS%2BfpayvZseZtAzCrLOSvPZN8MiHsCT33uikGV%2BbEZrzMEPB58YqOXIHMl9m%2Bji%2BIySJXsLdpCnTQrsjPoGIm8KTYL2iaj%2F9MdM7%2FQqToNQlRrIt2OR2X1m%2B70%2Foay8pCQjyZ36E6NsrkfTT0pQ6nBHD7TN5GVISG%2FuvRbEz2qHnVsP84eZPBgW4QZz6catJlJPEFwx4QW6w%2BXzdearEn%2F0FeYiztzne24XkUbdFXkGyYJtgf0v3O3Xj56wvND3n%2B5Zbnn8azoIkQwCFM1Ql%2F0lp07w%3D%3D"