File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF070SVK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF070SVK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF070SVK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF070SVK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF070SVK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF416FTW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF416FTW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF416FTW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF416FTW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF416FTW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF070SVK.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF070SVK.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF070SVK.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF070SVK.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF070SVK.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF070SVK.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF070SVK.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF070SVK.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF416FTW.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF416FTW.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF416FTW.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF416FTW.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF416FTW.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF416FTW.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF416FTW.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF416FTW.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF070SVK.crop_101-2bp.nodup.pr1_x_ctl.pooled.273M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF070SVK.crop_101-2bp.nodup.pr2_x_ctl.pooled.273M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF070SVK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF070SVK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF070SVK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF070SVK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF070SVK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF070SVK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF416FTW.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF416FTW.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF416FTW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF416FTW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF416FTW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF416FTW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF416FTW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF416FTW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/7db3a6f5-fa2a-42bd-90e6-c63d46edece2/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF070SVK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/8db57570-53bc-4ed6-9f47-f4a70e2672e3/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.477M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.477M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF070SVK.crop_101-2bp.nodup_x_ctl.pooled.273M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/00e3af2e-1e32-431b-aa90-a22d11c39811/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF416FTW.crop_101-2bp.nodup_x_ctl.pooled.203M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 7478242903714980350 chip.macs2_signal_track_pooled -2628834840649067651 BW FC 7478242903714980350->-2628834840649067651 -3847978309439852167 BW p-val 7478242903714980350->-3847978309439852167 9097291281826486238 chip.call_peak_pooled 8112066237155875224 Peak (bfilt) 9097291281826486238->8112066237155875224 797272873781187561 Peak 9097291281826486238->797272873781187561 6841312121798863771 chip.idr_ppr 797272873781187561->6841312121798863771 3491270936855415828 chip.idr 797272873781187561->3491270936855415828 -2499232753849349923 chip.overlap 797272873781187561->-2499232753849349923 6617157427487705202 chip.overlap_ppr 797272873781187561->6617157427487705202 3780104637321652373 chip.pool_ta 8402544231155131086 TAG-ALIGN 3780104637321652373->8402544231155131086 8402544231155131086->7478242903714980350 8402544231155131086->9097291281826486238 8402544231155131086->6841312121798863771 8402544231155131086->3491270936855415828 8402544231155131086->-2499232753849349923 8402544231155131086->6617157427487705202 -2024685078159414907 chip.call_peak -1964447906685257139 Peak (bfilt) -2024685078159414907->-1964447906685257139 3678614958347365351 Peak -2024685078159414907->3678614958347365351 3678614958347365351->3491270936855415828 3678614958347365351->-2499232753849349923 -1381752247098888646 chip.reproducibility_overlap 3678614958347365351->-1381752247098888646 -7326226836533071260 chip.reproducibility_idr 3678614958347365351->-7326226836533071260 -4718209720780772908 chip.bam2ta -537522301240521193 TAG-ALIGN -4718209720780772908->-537522301240521193 -537522301240521193->3780104637321652373 -537522301240521193->-2024685078159414907 3684651093345529929 chip.macs2_signal_track -537522301240521193->3684651093345529929 -537522301240521193->6841312121798863771 -537522301240521193->-1381752247098888646 -537522301240521193->-7326226836533071260 -537522301240521193->6617157427487705202 -4748215671474091569 chip.filter -5274618930215710050 SAMstats QC -4748215671474091569->-5274618930215710050 9192415400771060557 Filt/deduped BAM -4748215671474091569->9192415400771060557 6454157644639340731 LibCmplx QC -4748215671474091569->6454157644639340731 9192415400771060557->-4718209720780772908 612909266849331052 chip.jsd 9192415400771060557->612909266849331052 -5635726733841572424 chip.align 7067854059126323772 SAMstats QC -5635726733841572424->7067854059126323772 -4116128116011280990 BAM -5635726733841572424->-4116128116011280990 -4116128116011280990->-4748215671474091569 8715378357587340142 chip.xcor -8311683598296573925 XCOR Plot 8715378357587340142->-8311683598296573925 -1936626324846337139 BW FC 3684651093345529929->-1936626324846337139 5966148880694471994 BW p-val 3684651093345529929->5966148880694471994 5779286529573713122 FASTQ R1 (1) 5779286529573713122->-5635726733841572424 5779286529573713122->8715378357587340142 -4488931977769460080 FASTQ R2 (1) -4488931977769460080->-5635726733841572424 5567903391136803198 chip.call_peak 3523747548168198117 Peak (bfilt) 5567903391136803198->3523747548168198117 -6465595121263124415 Peak 5567903391136803198->-6465595121263124415 -6465595121263124415->3491270936855415828 -6465595121263124415->-2499232753849349923 -6465595121263124415->-1381752247098888646 -6465595121263124415->-7326226836533071260 -8075361206645196903 chip.bam2ta -6841907972003524059 TAG-ALIGN -8075361206645196903->-6841907972003524059 -6841907972003524059->3780104637321652373 -6841907972003524059->5567903391136803198 3494700749216564418 chip.macs2_signal_track -6841907972003524059->3494700749216564418 -6841907972003524059->6841312121798863771 -6841907972003524059->-1381752247098888646 -6841907972003524059->-7326226836533071260 -6841907972003524059->6617157427487705202 6048766058103321986 chip.filter 9052211928157475863 SAMstats QC 6048766058103321986->9052211928157475863 -5217683149109237211 Filt/deduped BAM 6048766058103321986->-5217683149109237211 -3096650784348788713 LibCmplx QC 6048766058103321986->-3096650784348788713 -5217683149109237211->-8075361206645196903 -5217683149109237211->612909266849331052 -3273966447382496141 chip.align 6253872712372602923 SAMstats QC -3273966447382496141->6253872712372602923 -2929253687497161359 BAM -3273966447382496141->-2929253687497161359 -2929253687497161359->6048766058103321986 -6183376518107142367 chip.xcor 98177601377963471 XCOR Plot -6183376518107142367->98177601377963471 3990946571512569017 BW FC 3494700749216564418->3990946571512569017 9139690847608120376 BW p-val 3494700749216564418->9139690847608120376 -8896197518074158284 FASTQ R1 (1) -8896197518074158284->-3273966447382496141 -8896197518074158284->-6183376518107142367 -7379740729165161548 FASTQ R2 (1) -7379740729165161548->-3273966447382496141 -218744588909125582 chip.pool_ta_ctl -4927104744015047416 TAG-ALIGN -218744588909125582->-4927104744015047416 -4927104744015047416->7478242903714980350 -4927104744015047416->9097291281826486238 -4927104744015047416->-2024685078159414907 -4927104744015047416->3684651093345529929 -4927104744015047416->5567903391136803198 -4927104744015047416->3494700749216564418 -4927104744015047416->6841312121798863771 -4927104744015047416->-1381752247098888646 -4927104744015047416->-7326226836533071260 -4927104744015047416->6617157427487705202 -279603052629111938 chip.bam2ta_ctl 3126908649525487638 TAG-ALIGN -279603052629111938->3126908649525487638 3126908649525487638->-218744588909125582 -6351501798131695276 Filt/deduped BAM -6351501798131695276->-279603052629111938 -6351501798131695276->612909266849331052 6361816248616343978 chip.bam2ta_ctl 903425946511254137 TAG-ALIGN 6361816248616343978->903425946511254137 903425946511254137->-218744588909125582 6882631304343390586 Filt/deduped BAM 6882631304343390586->6361816248616343978 6882631304343390586->612909266849331052 882638127701942317 chip.bam2ta_ctl 5333624524426076369 TAG-ALIGN 882638127701942317->5333624524426076369 5333624524426076369->-218744588909125582 -5117142503855419972 Filt/deduped BAM -5117142503855419972->882638127701942317 -5117142503855419972->612909266849331052 1091152749305936286 chip.bam2ta_ctl -1843929278633539216 TAG-ALIGN 1091152749305936286->-1843929278633539216 -1843929278633539216->-218744588909125582 -4728474849189894769 Filt/deduped BAM -4728474849189894769->1091152749305936286 -4728474849189894769->612909266849331052 -3572772233303021046 chip.bam2ta_ctl -7233433120678074876 TAG-ALIGN -3572772233303021046->-7233433120678074876 -7233433120678074876->-218744588909125582 -7102962717080742538 Filt/deduped BAM -7102962717080742538->-3572772233303021046 -7102962717080742538->612909266849331052 -1536157661329330687 chip.bam2ta_ctl -7568757110013753638 TAG-ALIGN -1536157661329330687->-7568757110013753638 -7568757110013753638->-218744588909125582 7941031552596537764 Filt/deduped BAM 7941031552596537764->-1536157661329330687 7941031552596537764->612909266849331052 5656951306826651105 chip.bam2ta_ctl 7556095501975988088 TAG-ALIGN 5656951306826651105->7556095501975988088 7556095501975988088->-218744588909125582 1999279540532917011 Filt/deduped BAM 1999279540532917011->5656951306826651105 1999279540532917011->612909266849331052 -6877994254834674970 chip.bam2ta_ctl 8180697711229650861 TAG-ALIGN -6877994254834674970->8180697711229650861 8180697711229650861->-218744588909125582 6353275101345262348 Filt/deduped BAM 6353275101345262348->-6877994254834674970 6353275101345262348->612909266849331052 -4909882881070303829 chip.bam2ta_ctl 4721871981716405182 TAG-ALIGN -4909882881070303829->4721871981716405182 4721871981716405182->-218744588909125582 -5030751944831032103 Filt/deduped BAM -5030751944831032103->-4909882881070303829 -5030751944831032103->612909266849331052 4002465904959547142 chip.bam2ta_ctl -182745321859809943 TAG-ALIGN 4002465904959547142->-182745321859809943 -182745321859809943->-218744588909125582 -3230939879257589546 Filt/deduped BAM -3230939879257589546->4002465904959547142 -3230939879257589546->612909266849331052 286172666531462665 chip.bam2ta_ctl 8246027830259606588 TAG-ALIGN 286172666531462665->8246027830259606588 8246027830259606588->-218744588909125582 8587071003223381451 Filt/deduped BAM 8587071003223381451->286172666531462665 8587071003223381451->612909266849331052 -1739227926512954578 chip.bam2ta_ctl 7524900975254573580 TAG-ALIGN -1739227926512954578->7524900975254573580 7524900975254573580->-218744588909125582 2485457813326511555 Filt/deduped BAM 2485457813326511555->-1739227926512954578 2485457813326511555->612909266849331052 1177565055798930079 chip.bam2ta_ctl 7164406219526981444 TAG-ALIGN 1177565055798930079->7164406219526981444 7164406219526981444->-218744588909125582 8031280824589876031 Filt/deduped BAM 8031280824589876031->1177565055798930079 8031280824589876031->612909266849331052 6518416184490172933 chip.bam2ta_ctl 4602599337836079308 TAG-ALIGN 6518416184490172933->4602599337836079308 4602599337836079308->-218744588909125582 5057862798137434902 Filt/deduped BAM 5057862798137434902->6518416184490172933 5057862798137434902->612909266849331052 6584112702836133646 chip.bam2ta_ctl 1859265832698450362 TAG-ALIGN 6584112702836133646->1859265832698450362 1859265832698450362->-218744588909125582 -1918600570153777442 Filt/deduped BAM -1918600570153777442->6584112702836133646 -1918600570153777442->612909266849331052 -3099839189864330337 chip.bam2ta_ctl 4520703325499038188 TAG-ALIGN -3099839189864330337->4520703325499038188 4520703325499038188->-218744588909125582 -3785379637244073894 Filt/deduped BAM -3785379637244073894->-3099839189864330337 -3785379637244073894->612909266849331052 -8559676827642889516 chip.bam2ta_ctl 1608637209122050032 TAG-ALIGN -8559676827642889516->1608637209122050032 1608637209122050032->-218744588909125582 -1673436829025996512 Filt/deduped BAM -1673436829025996512->-8559676827642889516 -1673436829025996512->612909266849331052 -6174946209249510446 chip.bam2ta_ctl -170615994755522079 TAG-ALIGN -6174946209249510446->-170615994755522079 -170615994755522079->-218744588909125582 8828920893938187482 Filt/deduped BAM 8828920893938187482->-6174946209249510446 8828920893938187482->612909266849331052 5917485286568085461 chip.bam2ta_ctl 1673107675949361398 TAG-ALIGN 5917485286568085461->1673107675949361398 1673107675949361398->-218744588909125582 1695789462209838081 Filt/deduped BAM 1695789462209838081->5917485286568085461 1695789462209838081->612909266849331052 -3680536148415870106 chip.bam2ta_ctl -1624516711860447628 TAG-ALIGN -3680536148415870106->-1624516711860447628 -1624516711860447628->-218744588909125582 8754159877123983371 Filt/deduped BAM 8754159877123983371->-3680536148415870106 8754159877123983371->612909266849331052 -7736181142028970620 chip.bam2ta_ctl 5290338566360014405 TAG-ALIGN -7736181142028970620->5290338566360014405 5290338566360014405->-218744588909125582 -5387621272490086681 Filt/deduped BAM -5387621272490086681->-7736181142028970620 -5387621272490086681->612909266849331052 4582296709776865952 chip.bam2ta_ctl 4804139433260198068 TAG-ALIGN 4582296709776865952->4804139433260198068 4804139433260198068->-218744588909125582 -2976685245785171541 Filt/deduped BAM -2976685245785171541->4582296709776865952 -2976685245785171541->612909266849331052 -7384411787449819694 chip.bam2ta_ctl 6456570831735281335 TAG-ALIGN -7384411787449819694->6456570831735281335 6456570831735281335->-218744588909125582 3644429822471035461 Filt/deduped BAM 3644429822471035461->-7384411787449819694 3644429822471035461->612909266849331052 4653922870337231474 chip.bam2ta_ctl -5488310214662141128 TAG-ALIGN 4653922870337231474->-5488310214662141128 -5488310214662141128->-218744588909125582 -6568954112478035009 Filt/deduped BAM -6568954112478035009->4653922870337231474 -6568954112478035009->612909266849331052 -4747132617296926227 IDR Plot ppr 6841312121798863771->-4747132617296926227 2916278504988324220 IDR Peak ppr 6841312121798863771->2916278504988324220 2916278504988324220->-7326226836533071260 -5159878732966199471 IDR Plot rep1_vs_rep2 3491270936855415828->-5159878732966199471 -7738423863190225719 IDR NPeak rep1_vs_rep2 3491270936855415828->-7738423863190225719 -7738423863190225719->-7326226836533071260 -2765278755841138865 Overlap Peak rep1_vs_rep2 -2499232753849349923->-2765278755841138865 -2765278755841138865->-1381752247098888646 2064932116082405446 Overlap Peak optimal -1381752247098888646->2064932116082405446 7883608067057565861 Overlap reproducibility -1381752247098888646->7883608067057565861 -210237486611051380 IDR Peak optimal -7326226836533071260->-210237486611051380 -8606043916779947111 IDR reproducibility -7326226836533071260->-8606043916779947111 -2774962405796792402 Overlap Peak ppr 6617157427487705202->-2774962405796792402 -2774962405796792402->-1381752247098888646 -3853682728377356767 JSD Plot 612909266849331052->-3853682728377356767

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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