File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF909UDE.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF909UDE.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF909UDE.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF909UDE.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF909UDE.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF936RHD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF936RHD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF936RHD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF936RHD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF936RHD.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.505M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.505M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.505M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF909UDE.crop_101-2bp.nodup.pr1_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF909UDE.crop_101-2bp.nodup.pr1_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF909UDE.crop_101-2bp.nodup.pr1_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF909UDE.crop_101-2bp.nodup.pr1_x_ctl.pooled.258M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF909UDE.crop_101-2bp.nodup.pr2_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF909UDE.crop_101-2bp.nodup.pr2_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF909UDE.crop_101-2bp.nodup.pr2_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF909UDE.crop_101-2bp.nodup.pr2_x_ctl.pooled.258M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF936RHD.crop_101-2bp.nodup.pr1_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF936RHD.crop_101-2bp.nodup.pr1_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF936RHD.crop_101-2bp.nodup.pr1_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF936RHD.crop_101-2bp.nodup.pr1_x_ctl.pooled.247M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF936RHD.crop_101-2bp.nodup.pr2_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF936RHD.crop_101-2bp.nodup.pr2_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF936RHD.crop_101-2bp.nodup.pr2_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF936RHD.crop_101-2bp.nodup.pr2_x_ctl.pooled.247M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.505M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF909UDE.crop_101-2bp.nodup.pr1_x_ctl.pooled.258M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF909UDE.crop_101-2bp.nodup.pr2_x_ctl.pooled.258M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF909UDE.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF909UDE.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF909UDE.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF909UDE.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF909UDE.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF909UDE.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF936RHD.crop_101-2bp.nodup.pr1_x_ctl.pooled.247M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF936RHD.crop_101-2bp.nodup.pr2_x_ctl.pooled.247M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF936RHD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF936RHD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF936RHD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF936RHD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF936RHD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF936RHD.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF909UDE.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/626e0f03-4af7-4e17-b559-0dcf30ba9c79/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.505M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.505M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF909UDE.crop_101-2bp.nodup_x_ctl.pooled.258M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/c9b3ee7c-b537-4619-82b5-4d8c41e19644/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF936RHD.crop_101-2bp.nodup_x_ctl.pooled.247M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 553579093116812674 chip.macs2_signal_track_pooled 2991812899845929687 BW FC 553579093116812674->2991812899845929687 -7698244627039105427 BW p-val 553579093116812674->-7698244627039105427 6252167958602624396 chip.call_peak_pooled 583665639359231253 Peak (bfilt) 6252167958602624396->583665639359231253 -8603885655425831964 Peak 6252167958602624396->-8603885655425831964 -1952642860864230805 chip.idr_ppr -8603885655425831964->-1952642860864230805 -4967015543876514341 chip.idr -8603885655425831964->-4967015543876514341 8789690787354445143 chip.overlap -8603885655425831964->8789690787354445143 -9132614680307691554 chip.overlap_ppr -8603885655425831964->-9132614680307691554 -4905753672561959534 chip.pool_ta 6376966596644961627 TAG-ALIGN -4905753672561959534->6376966596644961627 6376966596644961627->553579093116812674 6376966596644961627->6252167958602624396 6376966596644961627->-1952642860864230805 6376966596644961627->-4967015543876514341 6376966596644961627->8789690787354445143 6376966596644961627->-9132614680307691554 5345584762954905133 chip.call_peak -9108089576525036055 Peak (bfilt) 5345584762954905133->-9108089576525036055 4335139606174451208 Peak 5345584762954905133->4335139606174451208 4335139606174451208->-4967015543876514341 4335139606174451208->8789690787354445143 4450498837125863395 chip.reproducibility_overlap 4335139606174451208->4450498837125863395 -8748540084370103192 chip.reproducibility_idr 4335139606174451208->-8748540084370103192 8281138263623561354 chip.bam2ta -425386599985777108 TAG-ALIGN 8281138263623561354->-425386599985777108 -425386599985777108->-4905753672561959534 -425386599985777108->5345584762954905133 6515434700790540307 chip.macs2_signal_track -425386599985777108->6515434700790540307 -425386599985777108->-1952642860864230805 -425386599985777108->4450498837125863395 -425386599985777108->-8748540084370103192 -425386599985777108->-9132614680307691554 8086644404430860382 chip.filter 3518041521039965686 SAMstats QC 8086644404430860382->3518041521039965686 -7967477436419189148 Filt/deduped BAM 8086644404430860382->-7967477436419189148 -7732790723199695928 LibCmplx QC 8086644404430860382->-7732790723199695928 -7967477436419189148->8281138263623561354 2495744705192433908 chip.jsd -7967477436419189148->2495744705192433908 -5626201866849278559 chip.align -5664970793577539730 SAMstats QC -5626201866849278559->-5664970793577539730 -6650677707894920065 BAM -5626201866849278559->-6650677707894920065 -6650677707894920065->8086644404430860382 2114223994493775888 chip.xcor -7131575843842576091 XCOR Plot 2114223994493775888->-7131575843842576091 4275891096337363431 BW FC 6515434700790540307->4275891096337363431 -8453116416490390625 BW p-val 6515434700790540307->-8453116416490390625 -6102666617818963281 FASTQ R1 (1) -6102666617818963281->-5626201866849278559 -6102666617818963281->2114223994493775888 -2117245760271992753 FASTQ R2 (1) -2117245760271992753->-5626201866849278559 -5568655491390289600 chip.call_peak 1298297126300857017 Peak (bfilt) -5568655491390289600->1298297126300857017 2331953969520322703 Peak -5568655491390289600->2331953969520322703 2331953969520322703->-4967015543876514341 2331953969520322703->8789690787354445143 2331953969520322703->4450498837125863395 2331953969520322703->-8748540084370103192 2167041943656160906 chip.bam2ta 361907285787623954 TAG-ALIGN 2167041943656160906->361907285787623954 361907285787623954->-4905753672561959534 361907285787623954->-5568655491390289600 7641946172696575419 chip.macs2_signal_track 361907285787623954->7641946172696575419 361907285787623954->-1952642860864230805 361907285787623954->4450498837125863395 361907285787623954->-8748540084370103192 361907285787623954->-9132614680307691554 -6361511651819498575 chip.filter 3584243269903059567 SAMstats QC -6361511651819498575->3584243269903059567 8149803940622137753 Filt/deduped BAM -6361511651819498575->8149803940622137753 -7587357632741946631 LibCmplx QC -6361511651819498575->-7587357632741946631 8149803940622137753->2167041943656160906 8149803940622137753->2495744705192433908 -5754009552933969646 chip.align -1999585866298160759 SAMstats QC -5754009552933969646->-1999585866298160759 7115592471124196553 BAM -5754009552933969646->7115592471124196553 7115592471124196553->-6361511651819498575 -3838346302430324901 chip.xcor 3787613961024900902 XCOR Plot -3838346302430324901->3787613961024900902 2094269584909978574 BW FC 7641946172696575419->2094269584909978574 8011339452644243530 BW p-val 7641946172696575419->8011339452644243530 1338151441570617506 FASTQ R1 (1) 1338151441570617506->-5754009552933969646 1338151441570617506->-3838346302430324901 1043552416081403690 FASTQ R2 (1) 1043552416081403690->-5754009552933969646 4647784849417779141 chip.pool_ta_ctl 8938546206758169834 TAG-ALIGN 4647784849417779141->8938546206758169834 8938546206758169834->553579093116812674 8938546206758169834->6252167958602624396 8938546206758169834->5345584762954905133 8938546206758169834->6515434700790540307 8938546206758169834->-5568655491390289600 8938546206758169834->7641946172696575419 8938546206758169834->-1952642860864230805 8938546206758169834->4450498837125863395 8938546206758169834->-8748540084370103192 8938546206758169834->-9132614680307691554 -1391480549088867546 chip.bam2ta_ctl -1723086942496991475 TAG-ALIGN -1391480549088867546->-1723086942496991475 -1723086942496991475->4647784849417779141 -4254339184123204833 Filt/deduped BAM -4254339184123204833->-1391480549088867546 -4254339184123204833->2495744705192433908 7313040743921016553 chip.bam2ta_ctl 3875019172671836247 TAG-ALIGN 7313040743921016553->3875019172671836247 3875019172671836247->4647784849417779141 5733245542532396177 Filt/deduped BAM 5733245542532396177->7313040743921016553 5733245542532396177->2495744705192433908 5717510362101760836 chip.bam2ta_ctl -6869602981997142067 TAG-ALIGN 5717510362101760836->-6869602981997142067 -6869602981997142067->4647784849417779141 -7310434631205451561 Filt/deduped BAM -7310434631205451561->5717510362101760836 -7310434631205451561->2495744705192433908 7229733593687190010 chip.bam2ta_ctl 5610584128684154299 TAG-ALIGN 7229733593687190010->5610584128684154299 5610584128684154299->4647784849417779141 684437675850592112 Filt/deduped BAM 684437675850592112->7229733593687190010 684437675850592112->2495744705192433908 -8492428553751035505 chip.bam2ta_ctl -7145430502540679036 TAG-ALIGN -8492428553751035505->-7145430502540679036 -7145430502540679036->4647784849417779141 -2341053482876889899 Filt/deduped BAM -2341053482876889899->-8492428553751035505 -2341053482876889899->2495744705192433908 -3230885822083157376 chip.bam2ta_ctl -209857020634856974 TAG-ALIGN -3230885822083157376->-209857020634856974 -209857020634856974->4647784849417779141 -142558028472343401 Filt/deduped BAM -142558028472343401->-3230885822083157376 -142558028472343401->2495744705192433908 686475339708230081 chip.bam2ta_ctl 7413749069942237357 TAG-ALIGN 686475339708230081->7413749069942237357 7413749069942237357->4647784849417779141 -2129660655831122906 Filt/deduped BAM -2129660655831122906->686475339708230081 -2129660655831122906->2495744705192433908 5252783719683078535 chip.bam2ta_ctl -2401353167714911912 TAG-ALIGN 5252783719683078535->-2401353167714911912 -2401353167714911912->4647784849417779141 4465479052002483580 Filt/deduped BAM 4465479052002483580->5252783719683078535 4465479052002483580->2495744705192433908 9219565651384242771 chip.bam2ta_ctl -7987375715655271615 TAG-ALIGN 9219565651384242771->-7987375715655271615 -7987375715655271615->4647784849417779141 -8676695465573165726 Filt/deduped BAM -8676695465573165726->9219565651384242771 -8676695465573165726->2495744705192433908 3001568545358060096 chip.bam2ta_ctl 4811434759606186837 TAG-ALIGN 3001568545358060096->4811434759606186837 4811434759606186837->4647784849417779141 -6904625379958991874 Filt/deduped BAM -6904625379958991874->3001568545358060096 -6904625379958991874->2495744705192433908 -4829371153444617450 chip.bam2ta_ctl -1009923916780354393 TAG-ALIGN -4829371153444617450->-1009923916780354393 -1009923916780354393->4647784849417779141 5504414969742786887 Filt/deduped BAM 5504414969742786887->-4829371153444617450 5504414969742786887->2495744705192433908 8015266671428416038 chip.bam2ta_ctl -6902130209286956861 TAG-ALIGN 8015266671428416038->-6902130209286956861 -6902130209286956861->4647784849417779141 -516801558773008636 Filt/deduped BAM -516801558773008636->8015266671428416038 -516801558773008636->2495744705192433908 -5687892805920317991 chip.bam2ta_ctl 6070598402265404823 TAG-ALIGN -5687892805920317991->6070598402265404823 6070598402265404823->4647784849417779141 7657525784949360054 Filt/deduped BAM 7657525784949360054->-5687892805920317991 7657525784949360054->2495744705192433908 3736229303332389116 chip.bam2ta_ctl -6657298870314312965 TAG-ALIGN 3736229303332389116->-6657298870314312965 -6657298870314312965->4647784849417779141 5678753825704088696 Filt/deduped BAM 5678753825704088696->3736229303332389116 5678753825704088696->2495744705192433908 9148666900194637179 chip.bam2ta_ctl -3450576336954636873 TAG-ALIGN 9148666900194637179->-3450576336954636873 -3450576336954636873->4647784849417779141 1324989063176759178 Filt/deduped BAM 1324989063176759178->9148666900194637179 1324989063176759178->2495744705192433908 -588197702162727242 chip.bam2ta_ctl 83196053238146595 TAG-ALIGN -588197702162727242->83196053238146595 83196053238146595->4647784849417779141 8960717697418885440 Filt/deduped BAM 8960717697418885440->-588197702162727242 8960717697418885440->2495744705192433908 4450871372783918693 chip.bam2ta_ctl 7031939443600099429 TAG-ALIGN 4450871372783918693->7031939443600099429 7031939443600099429->4647784849417779141 -2636850634380326132 Filt/deduped BAM -2636850634380326132->4450871372783918693 -2636850634380326132->2495744705192433908 9187054131017724885 chip.bam2ta_ctl 5756321023000493082 TAG-ALIGN 9187054131017724885->5756321023000493082 5756321023000493082->4647784849417779141 -6133898547598929106 Filt/deduped BAM -6133898547598929106->9187054131017724885 -6133898547598929106->2495744705192433908 -150231857176396861 chip.bam2ta_ctl -6279658821662154369 TAG-ALIGN -150231857176396861->-6279658821662154369 -6279658821662154369->4647784849417779141 6809796235121652190 Filt/deduped BAM 6809796235121652190->-150231857176396861 6809796235121652190->2495744705192433908 -117166714195841104 chip.bam2ta_ctl -4472932576407586793 TAG-ALIGN -117166714195841104->-4472932576407586793 -4472932576407586793->4647784849417779141 -7996489894551818786 Filt/deduped BAM -7996489894551818786->-117166714195841104 -7996489894551818786->2495744705192433908 4793369382943679659 chip.bam2ta_ctl -448001115769276777 TAG-ALIGN 4793369382943679659->-448001115769276777 -448001115769276777->4647784849417779141 8003683823637228032 Filt/deduped BAM 8003683823637228032->4793369382943679659 8003683823637228032->2495744705192433908 -1935797704454152227 chip.bam2ta_ctl 3647294143467323111 TAG-ALIGN -1935797704454152227->3647294143467323111 3647294143467323111->4647784849417779141 1786128570932977033 Filt/deduped BAM 1786128570932977033->-1935797704454152227 1786128570932977033->2495744705192433908 4592633552351219411 chip.bam2ta_ctl 2676844037319417174 TAG-ALIGN 4592633552351219411->2676844037319417174 2676844037319417174->4647784849417779141 -3704064313226767663 Filt/deduped BAM -3704064313226767663->4592633552351219411 -3704064313226767663->2495744705192433908 4063809745950365174 chip.bam2ta_ctl 6628687745848501306 TAG-ALIGN 4063809745950365174->6628687745848501306 6628687745848501306->4647784849417779141 -7976052043634830445 Filt/deduped BAM -7976052043634830445->4063809745950365174 -7976052043634830445->2495744705192433908 -5131924063592071133 IDR Plot ppr -1952642860864230805->-5131924063592071133 -8150280093910730841 IDR Peak ppr -1952642860864230805->-8150280093910730841 -8150280093910730841->-8748540084370103192 -8271886546758183384 IDR Plot rep1_vs_rep2 -4967015543876514341->-8271886546758183384 -9124243844061073737 IDR NPeak rep1_vs_rep2 -4967015543876514341->-9124243844061073737 -9124243844061073737->-8748540084370103192 2718433019560134712 Overlap Peak rep1_vs_rep2 8789690787354445143->2718433019560134712 2718433019560134712->4450498837125863395 -8357075021458914249 Overlap Peak optimal 4450498837125863395->-8357075021458914249 -3392064706784974894 Overlap reproducibility 4450498837125863395->-3392064706784974894 -8660003625125149690 IDR Peak optimal -8748540084370103192->-8660003625125149690 -718715936148534610 IDR reproducibility -8748540084370103192->-718715936148534610 7215480479305452157 Overlap Peak ppr -9132614680307691554->7215480479305452157 7215480479305452157->4450498837125863395 4311279109043285457 JSD Plot 2495744705192433908->4311279109043285457

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