File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF561LOR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF561LOR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF561LOR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF561LOR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF561LOR.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF331OEC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF331OEC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF331OEC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF331OEC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF331OEC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.486M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.486M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.486M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.486M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.486M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.486M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.486M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF561LOR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF561LOR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF561LOR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF561LOR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF561LOR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF561LOR.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF331OEC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF331OEC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF331OEC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF331OEC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF331OEC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF331OEC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/f9251a87-b622-4d56-85f7-fc5a0ec497bd/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/f9251a87-b622-4d56-85f7-fc5a0ec497bd/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/f9251a87-b622-4d56-85f7-fc5a0ec497bd/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF561LOR.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/12ad4be9-a4d8-4fec-83e1-f426ac1ab73b/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.486M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.486M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 344326851349547301 chip.macs2_signal_track_pooled 438988148493574934 BW FC 344326851349547301->438988148493574934 1248197836263867690 BW p-val 344326851349547301->1248197836263867690 4205232039891998196 chip.call_peak_pooled -4814610703758108103 Peak (bfilt) 4205232039891998196->-4814610703758108103 -7347427026733409358 Peak 4205232039891998196->-7347427026733409358 -399300648579003280 chip.idr_ppr -7347427026733409358->-399300648579003280 2111158915455412573 chip.idr -7347427026733409358->2111158915455412573 -6269637870282650256 chip.overlap -7347427026733409358->-6269637870282650256 -4842649161353684792 chip.overlap_ppr -7347427026733409358->-4842649161353684792 6966625817683335539 chip.pool_ta -1470362211145221175 TAG-ALIGN 6966625817683335539->-1470362211145221175 -1470362211145221175->344326851349547301 -1470362211145221175->4205232039891998196 -1470362211145221175->-399300648579003280 -1470362211145221175->2111158915455412573 -1470362211145221175->-6269637870282650256 -1470362211145221175->-4842649161353684792 4615286258160287912 chip.call_peak 9120926815586002033 Peak (bfilt) 4615286258160287912->9120926815586002033 -3740812526357142441 Peak 4615286258160287912->-3740812526357142441 -3740812526357142441->2111158915455412573 -3740812526357142441->-6269637870282650256 -6961716318550641744 chip.reproducibility_overlap -3740812526357142441->-6961716318550641744 6990869617790606239 chip.reproducibility_idr -3740812526357142441->6990869617790606239 8217800069763646579 chip.bam2ta 8484805238009365531 TAG-ALIGN 8217800069763646579->8484805238009365531 8484805238009365531->6966625817683335539 8484805238009365531->4615286258160287912 4468477875003192508 chip.macs2_signal_track 8484805238009365531->4468477875003192508 8484805238009365531->-399300648579003280 8484805238009365531->-6961716318550641744 8484805238009365531->6990869617790606239 8484805238009365531->-4842649161353684792 -7169761377914376183 chip.filter -8452265913854009317 SAMstats QC -7169761377914376183->-8452265913854009317 -8073248588131126241 Filt/deduped BAM -7169761377914376183->-8073248588131126241 668153619798211449 LibCmplx QC -7169761377914376183->668153619798211449 -8073248588131126241->8217800069763646579 8787093476201093956 chip.jsd -8073248588131126241->8787093476201093956 -8453864492986958949 chip.jsd -8073248588131126241->-8453864492986958949 94574290742691024 chip.align -3485963090395435900 SAMstats QC 94574290742691024->-3485963090395435900 -7239918857873929208 BAM 94574290742691024->-7239918857873929208 -7239918857873929208->-7169761377914376183 5898856846812877725 chip.xcor -7479946622652153356 XCOR Plot 5898856846812877725->-7479946622652153356 3041897594945123924 BW FC 4468477875003192508->3041897594945123924 6097252626583746201 BW p-val 4468477875003192508->6097252626583746201 -7237948357406138035 FASTQ R1 (1) -7237948357406138035->94574290742691024 -7237948357406138035->5898856846812877725 2849221799713445014 FASTQ R2 (1) 2849221799713445014->94574290742691024 -6453924588669262375 chip.call_peak 2117898547788712867 Peak (bfilt) -6453924588669262375->2117898547788712867 -6526051863173475624 Peak -6453924588669262375->-6526051863173475624 -6526051863173475624->2111158915455412573 -6526051863173475624->-6269637870282650256 -6526051863173475624->-6961716318550641744 -6526051863173475624->6990869617790606239 -5042060704926545599 chip.bam2ta 2553830047358329140 TAG-ALIGN -5042060704926545599->2553830047358329140 2553830047358329140->6966625817683335539 2553830047358329140->-6453924588669262375 6719827376244552399 chip.macs2_signal_track 2553830047358329140->6719827376244552399 2553830047358329140->-399300648579003280 2553830047358329140->-6961716318550641744 2553830047358329140->6990869617790606239 2553830047358329140->-4842649161353684792 -790899643930072996 chip.filter -950953883717584100 SAMstats QC -790899643930072996->-950953883717584100 -1335645733069459565 Filt/deduped BAM -790899643930072996->-1335645733069459565 -7488930538966623543 LibCmplx QC -790899643930072996->-7488930538966623543 -1335645733069459565->-5042060704926545599 -1335645733069459565->8787093476201093956 -1335645733069459565->-8453864492986958949 -2331579763077998896 chip.align -5083273900752491899 SAMstats QC -2331579763077998896->-5083273900752491899 -3077334857534651719 BAM -2331579763077998896->-3077334857534651719 -3077334857534651719->-790899643930072996 8299500470847357348 chip.xcor -4623633712303898693 XCOR Plot 8299500470847357348->-4623633712303898693 1978522679613524668 BW FC 6719827376244552399->1978522679613524668 5724730416486633050 BW p-val 6719827376244552399->5724730416486633050 -4340091885040262158 FASTQ R1 (1) -4340091885040262158->-2331579763077998896 -4340091885040262158->8299500470847357348 -6426833347933355810 FASTQ R2 (1) -6426833347933355810->-2331579763077998896 8684393133269467898 chip.pool_ta_ctl 8005345285401293733 TAG-ALIGN 8684393133269467898->8005345285401293733 8005345285401293733->344326851349547301 8005345285401293733->4205232039891998196 8005345285401293733->4615286258160287912 8005345285401293733->4468477875003192508 8005345285401293733->-6453924588669262375 8005345285401293733->6719827376244552399 8005345285401293733->-399300648579003280 8005345285401293733->-6961716318550641744 8005345285401293733->6990869617790606239 8005345285401293733->-4842649161353684792 5243108442141699098 chip.bam2ta_ctl -7014623195050632353 TAG-ALIGN 5243108442141699098->-7014623195050632353 -7014623195050632353->8684393133269467898 -3002311627028119552 Filt/deduped BAM -3002311627028119552->5243108442141699098 -3002311627028119552->8787093476201093956 -3002311627028119552->-8453864492986958949 2236446673667144140 chip.bam2ta_ctl -5471813589154077977 TAG-ALIGN 2236446673667144140->-5471813589154077977 -5471813589154077977->8684393133269467898 375881553345467705 Filt/deduped BAM 375881553345467705->2236446673667144140 375881553345467705->8787093476201093956 375881553345467705->-8453864492986958949 6271759120379351654 chip.bam2ta_ctl 172697176984657543 TAG-ALIGN 6271759120379351654->172697176984657543 172697176984657543->8684393133269467898 8335001219630102742 Filt/deduped BAM 8335001219630102742->6271759120379351654 8335001219630102742->8787093476201093956 8335001219630102742->-8453864492986958949 8748182785993212627 chip.bam2ta_ctl 8617423703222846258 TAG-ALIGN 8748182785993212627->8617423703222846258 8617423703222846258->8684393133269467898 6678303990647301511 Filt/deduped BAM 6678303990647301511->8748182785993212627 6678303990647301511->8787093476201093956 6678303990647301511->-8453864492986958949 -2840689054575396445 chip.bam2ta_ctl -1423866126810767909 TAG-ALIGN -2840689054575396445->-1423866126810767909 -1423866126810767909->8684393133269467898 -961181352916301903 Filt/deduped BAM -961181352916301903->-2840689054575396445 -961181352916301903->8787093476201093956 -961181352916301903->-8453864492986958949 -5594553765750055223 chip.bam2ta_ctl 1001302648787226046 TAG-ALIGN -5594553765750055223->1001302648787226046 1001302648787226046->8684393133269467898 -914166894293816933 Filt/deduped BAM -914166894293816933->-5594553765750055223 -914166894293816933->8787093476201093956 -914166894293816933->-8453864492986958949 5522910150143100453 chip.bam2ta_ctl 5401325830799651745 TAG-ALIGN 5522910150143100453->5401325830799651745 5401325830799651745->8684393133269467898 6092322073075527807 Filt/deduped BAM 6092322073075527807->5522910150143100453 6092322073075527807->8787093476201093956 6092322073075527807->-8453864492986958949 6541598206285727149 chip.bam2ta_ctl 1867351224860459908 TAG-ALIGN 6541598206285727149->1867351224860459908 1867351224860459908->8684393133269467898 1903386871339097183 Filt/deduped BAM 1903386871339097183->6541598206285727149 1903386871339097183->8787093476201093956 1903386871339097183->-8453864492986958949 -520482710150959940 chip.bam2ta_ctl -9163687211386190018 TAG-ALIGN -520482710150959940->-9163687211386190018 -9163687211386190018->8684393133269467898 -8492185707261992231 Filt/deduped BAM -8492185707261992231->-520482710150959940 -8492185707261992231->8787093476201093956 -8492185707261992231->-8453864492986958949 -2048454215151575709 chip.bam2ta_ctl -1262739122414891148 TAG-ALIGN -2048454215151575709->-1262739122414891148 -1262739122414891148->8684393133269467898 -1401079696582063133 Filt/deduped BAM -1401079696582063133->-2048454215151575709 -1401079696582063133->8787093476201093956 -1401079696582063133->-8453864492986958949 -7958887296787060496 chip.bam2ta_ctl -52517054597175165 TAG-ALIGN -7958887296787060496->-52517054597175165 -52517054597175165->8684393133269467898 -7130362318271093764 Filt/deduped BAM -7130362318271093764->-7958887296787060496 -7130362318271093764->8787093476201093956 -7130362318271093764->-8453864492986958949 -531809776773876448 chip.bam2ta_ctl -8816943054926410629 TAG-ALIGN -531809776773876448->-8816943054926410629 -8816943054926410629->8684393133269467898 7329419667160002943 Filt/deduped BAM 7329419667160002943->-531809776773876448 7329419667160002943->8787093476201093956 7329419667160002943->-8453864492986958949 7447079782779995650 chip.bam2ta_ctl 7358931113192363493 TAG-ALIGN 7447079782779995650->7358931113192363493 7358931113192363493->8684393133269467898 -4201107422440973842 Filt/deduped BAM -4201107422440973842->7447079782779995650 -4201107422440973842->8787093476201093956 -4201107422440973842->-8453864492986958949 6916209296226155835 chip.bam2ta_ctl -7184166451428652846 TAG-ALIGN 6916209296226155835->-7184166451428652846 -7184166451428652846->8684393133269467898 3523320292732424277 Filt/deduped BAM 3523320292732424277->6916209296226155835 3523320292732424277->8787093476201093956 3523320292732424277->-8453864492986958949 4315106245751781123 chip.bam2ta_ctl -2113032594048164585 TAG-ALIGN 4315106245751781123->-2113032594048164585 -2113032594048164585->8684393133269467898 -8561794476447901797 Filt/deduped BAM -8561794476447901797->4315106245751781123 -8561794476447901797->8787093476201093956 -8561794476447901797->-8453864492986958949 -1184409308321764017 chip.bam2ta_ctl -7095150223409634779 TAG-ALIGN -1184409308321764017->-7095150223409634779 -7095150223409634779->8684393133269467898 4201937326468146798 Filt/deduped BAM 4201937326468146798->-1184409308321764017 4201937326468146798->8787093476201093956 4201937326468146798->-8453864492986958949 1583490377667544158 chip.bam2ta_ctl -5803945284105917528 TAG-ALIGN 1583490377667544158->-5803945284105917528 -5803945284105917528->8684393133269467898 563105356356555309 Filt/deduped BAM 563105356356555309->1583490377667544158 563105356356555309->8787093476201093956 563105356356555309->-8453864492986958949 -6622513172844329159 chip.bam2ta_ctl 5228876038209674449 TAG-ALIGN -6622513172844329159->5228876038209674449 5228876038209674449->8684393133269467898 -5899287855518642226 Filt/deduped BAM -5899287855518642226->-6622513172844329159 -5899287855518642226->8787093476201093956 -5899287855518642226->-8453864492986958949 8791596751851381927 chip.bam2ta_ctl 3619441146277844505 TAG-ALIGN 8791596751851381927->3619441146277844505 3619441146277844505->8684393133269467898 6530864914344926809 Filt/deduped BAM 6530864914344926809->8791596751851381927 6530864914344926809->8787093476201093956 6530864914344926809->-8453864492986958949 -767512707276998737 chip.bam2ta_ctl 1003070917893333978 TAG-ALIGN -767512707276998737->1003070917893333978 1003070917893333978->8684393133269467898 -61243560646081245 Filt/deduped BAM -61243560646081245->-767512707276998737 -61243560646081245->8787093476201093956 -61243560646081245->-8453864492986958949 1134607010002624688 chip.bam2ta_ctl -4864100123887522691 TAG-ALIGN 1134607010002624688->-4864100123887522691 -4864100123887522691->8684393133269467898 -9171571025827164372 Filt/deduped BAM -9171571025827164372->1134607010002624688 -9171571025827164372->8787093476201093956 -9171571025827164372->-8453864492986958949 -1790801183422439928 chip.bam2ta_ctl 1367475946614296385 TAG-ALIGN -1790801183422439928->1367475946614296385 1367475946614296385->8684393133269467898 -8427626670681681373 Filt/deduped BAM -8427626670681681373->-1790801183422439928 -8427626670681681373->8787093476201093956 -8427626670681681373->-8453864492986958949 -3914530585066863902 chip.bam2ta_ctl -2570528388627928381 TAG-ALIGN -3914530585066863902->-2570528388627928381 -2570528388627928381->8684393133269467898 -6412688109653073158 Filt/deduped BAM -6412688109653073158->-3914530585066863902 -6412688109653073158->8787093476201093956 -6412688109653073158->-8453864492986958949 6189370953063463290 chip.bam2ta_ctl 1828122139650759955 TAG-ALIGN 6189370953063463290->1828122139650759955 1828122139650759955->8684393133269467898 -1083340159223738275 Filt/deduped BAM -1083340159223738275->6189370953063463290 -1083340159223738275->8787093476201093956 -1083340159223738275->-8453864492986958949 516251670744278209 IDR Plot ppr -399300648579003280->516251670744278209 1352549517443365031 IDR Peak ppr -399300648579003280->1352549517443365031 1352549517443365031->6990869617790606239 4847353138841575844 IDR Plot rep1_vs_rep2 2111158915455412573->4847353138841575844 -617926563683982916 IDR NPeak rep1_vs_rep2 2111158915455412573->-617926563683982916 -617926563683982916->6990869617790606239 4881141682749728065 Overlap Peak rep1_vs_rep2 -6269637870282650256->4881141682749728065 4881141682749728065->-6961716318550641744 3355986151054650147 Overlap Peak optimal -6961716318550641744->3355986151054650147 -1413319200302490140 Overlap reproducibility -6961716318550641744->-1413319200302490140 7799527939370689311 IDR Peak optimal 6990869617790606239->7799527939370689311 1779686993455051246 IDR reproducibility 6990869617790606239->1779686993455051246 -2658079594277165247 Overlap Peak ppr -4842649161353684792->-2658079594277165247 -2658079594277165247->-6961716318550641744 -6817433602007355516 JSD Plot 8787093476201093956->-6817433602007355516 -8453864492986958949->-6817433602007355516

UCSC browser tracks

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