File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF561LOR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF561LOR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF561LOR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF561LOR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF561LOR.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF331OEC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF331OEC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF331OEC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF331OEC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF331OEC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.486M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.486M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.486M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.486M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF561LOR.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF561LOR.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF561LOR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF561LOR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF561LOR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF561LOR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF561LOR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF561LOR.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF331OEC.crop_101-2bp.nodup.pr1_x_ctl.pooled.203M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF331OEC.crop_101-2bp.nodup.pr2_x_ctl.pooled.203M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF331OEC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF331OEC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF331OEC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF331OEC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF331OEC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF331OEC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/f9251a87-b622-4d56-85f7-fc5a0ec497bd/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF561LOR.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/3be89c18-3012-4a8e-880c-039cbe926aa4/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.486M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.486M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF561LOR.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF331OEC.crop_101-2bp.nodup_x_ctl.pooled.203M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3478735875963432807 chip.macs2_signal_track_pooled 7410997734296681262 BW FC 3478735875963432807->7410997734296681262 -8409149838495680939 BW p-val 3478735875963432807->-8409149838495680939 -6257259150268999033 chip.call_peak_pooled -7022110672721543099 Peak (bfilt) -6257259150268999033->-7022110672721543099 8970611717712343623 Peak -6257259150268999033->8970611717712343623 -6941851196367057961 chip.idr_ppr 8970611717712343623->-6941851196367057961 -4695171485924459716 chip.idr 8970611717712343623->-4695171485924459716 -8121173596341975632 chip.overlap 8970611717712343623->-8121173596341975632 -4705044292784982814 chip.overlap_ppr 8970611717712343623->-4705044292784982814 -8070459137205491505 chip.pool_ta 303068182726974790 TAG-ALIGN -8070459137205491505->303068182726974790 303068182726974790->3478735875963432807 303068182726974790->-6257259150268999033 303068182726974790->-6941851196367057961 303068182726974790->-4695171485924459716 303068182726974790->-8121173596341975632 303068182726974790->-4705044292784982814 -8691360711823030443 chip.call_peak -4435647948276741615 Peak (bfilt) -8691360711823030443->-4435647948276741615 7439407494563677155 Peak -8691360711823030443->7439407494563677155 7439407494563677155->-4695171485924459716 7439407494563677155->-8121173596341975632 5187755527611053944 chip.reproducibility_overlap 7439407494563677155->5187755527611053944 -8366102491179629054 chip.reproducibility_idr 7439407494563677155->-8366102491179629054 8032086746499302768 chip.bam2ta 7152164812102313602 TAG-ALIGN 8032086746499302768->7152164812102313602 7152164812102313602->-8070459137205491505 7152164812102313602->-8691360711823030443 -2259608522595697078 chip.macs2_signal_track 7152164812102313602->-2259608522595697078 7152164812102313602->-6941851196367057961 7152164812102313602->5187755527611053944 7152164812102313602->-8366102491179629054 7152164812102313602->-4705044292784982814 4881843782236939213 chip.filter 1614491699556580336 SAMstats QC 4881843782236939213->1614491699556580336 -8350152052548363962 Filt/deduped BAM 4881843782236939213->-8350152052548363962 -4717443201474801904 LibCmplx QC 4881843782236939213->-4717443201474801904 -8350152052548363962->8032086746499302768 3439856786774182579 chip.jsd -8350152052548363962->3439856786774182579 -5482493074009439026 chip.align -6739548705647800602 SAMstats QC -5482493074009439026->-6739548705647800602 -5049709071177327886 BAM -5482493074009439026->-5049709071177327886 -5049709071177327886->4881843782236939213 -7347615835625043857 chip.xcor 5825793370890304619 XCOR Plot -7347615835625043857->5825793370890304619 -6907525261453370604 BW FC -2259608522595697078->-6907525261453370604 -3977699840582998265 BW p-val -2259608522595697078->-3977699840582998265 -3022738651039030568 FASTQ R1 (1) -3022738651039030568->-5482493074009439026 -3022738651039030568->-7347615835625043857 -2785664268010589975 FASTQ R2 (1) -2785664268010589975->-5482493074009439026 5492374139570938405 chip.call_peak -3238427605459968686 Peak (bfilt) 5492374139570938405->-3238427605459968686 -6199353569345208440 Peak 5492374139570938405->-6199353569345208440 -6199353569345208440->-4695171485924459716 -6199353569345208440->-8121173596341975632 -6199353569345208440->5187755527611053944 -6199353569345208440->-8366102491179629054 -6907262820986439989 chip.bam2ta 5355704748325014028 TAG-ALIGN -6907262820986439989->5355704748325014028 5355704748325014028->-8070459137205491505 5355704748325014028->5492374139570938405 -1488355157102080919 chip.macs2_signal_track 5355704748325014028->-1488355157102080919 5355704748325014028->-6941851196367057961 5355704748325014028->5187755527611053944 5355704748325014028->-8366102491179629054 5355704748325014028->-4705044292784982814 4897264511114964786 chip.filter -2881836517853260240 SAMstats QC 4897264511114964786->-2881836517853260240 2731560140418129628 Filt/deduped BAM 4897264511114964786->2731560140418129628 -2697459131986389552 LibCmplx QC 4897264511114964786->-2697459131986389552 2731560140418129628->-6907262820986439989 2731560140418129628->3439856786774182579 -256725496732673193 chip.align -8229340878326810340 SAMstats QC -256725496732673193->-8229340878326810340 -7532983039905944280 BAM -256725496732673193->-7532983039905944280 -7532983039905944280->4897264511114964786 1235513021460484931 chip.xcor -3129199963243304017 XCOR Plot 1235513021460484931->-3129199963243304017 -4333358832838457370 BW FC -1488355157102080919->-4333358832838457370 1183142551556523701 BW p-val -1488355157102080919->1183142551556523701 3840494556797567176 FASTQ R1 (1) 3840494556797567176->-256725496732673193 3840494556797567176->1235513021460484931 4705034629517296355 FASTQ R2 (1) 4705034629517296355->-256725496732673193 -4379799423437904247 chip.pool_ta_ctl 5081435748982037606 TAG-ALIGN -4379799423437904247->5081435748982037606 5081435748982037606->3478735875963432807 5081435748982037606->-6257259150268999033 5081435748982037606->-8691360711823030443 5081435748982037606->-2259608522595697078 5081435748982037606->5492374139570938405 5081435748982037606->-1488355157102080919 5081435748982037606->-6941851196367057961 5081435748982037606->5187755527611053944 5081435748982037606->-8366102491179629054 5081435748982037606->-4705044292784982814 8725665529015794357 chip.bam2ta_ctl 9075513887637375272 TAG-ALIGN 8725665529015794357->9075513887637375272 9075513887637375272->-4379799423437904247 -1408615077358949253 Filt/deduped BAM -1408615077358949253->8725665529015794357 -1408615077358949253->3439856786774182579 2469867429104144637 chip.bam2ta_ctl 1994972069934979973 TAG-ALIGN 2469867429104144637->1994972069934979973 1994972069934979973->-4379799423437904247 4355644710920845279 Filt/deduped BAM 4355644710920845279->2469867429104144637 4355644710920845279->3439856786774182579 5356255835766238750 chip.bam2ta_ctl -7221388474906593663 TAG-ALIGN 5356255835766238750->-7221388474906593663 -7221388474906593663->-4379799423437904247 -2603953818921252887 Filt/deduped BAM -2603953818921252887->5356255835766238750 -2603953818921252887->3439856786774182579 2611824509168112412 chip.bam2ta_ctl 8947613678495442108 TAG-ALIGN 2611824509168112412->8947613678495442108 8947613678495442108->-4379799423437904247 5131197259978960423 Filt/deduped BAM 5131197259978960423->2611824509168112412 5131197259978960423->3439856786774182579 -3586144368186387566 chip.bam2ta_ctl -856265936413304904 TAG-ALIGN -3586144368186387566->-856265936413304904 -856265936413304904->-4379799423437904247 -4055774990885565488 Filt/deduped BAM -4055774990885565488->-3586144368186387566 -4055774990885565488->3439856786774182579 8110239499527774972 chip.bam2ta_ctl 5568848234363813138 TAG-ALIGN 8110239499527774972->5568848234363813138 5568848234363813138->-4379799423437904247 -6021113012162314813 Filt/deduped BAM -6021113012162314813->8110239499527774972 -6021113012162314813->3439856786774182579 2925992763662848609 chip.bam2ta_ctl -8884667066592687803 TAG-ALIGN 2925992763662848609->-8884667066592687803 -8884667066592687803->-4379799423437904247 3416820373378438930 Filt/deduped BAM 3416820373378438930->2925992763662848609 3416820373378438930->3439856786774182579 -7566175588715214359 chip.bam2ta_ctl 1116423346124078893 TAG-ALIGN -7566175588715214359->1116423346124078893 1116423346124078893->-4379799423437904247 -1419963745811548507 Filt/deduped BAM -1419963745811548507->-7566175588715214359 -1419963745811548507->3439856786774182579 9187003930965775870 chip.bam2ta_ctl -6715134826623458108 TAG-ALIGN 9187003930965775870->-6715134826623458108 -6715134826623458108->-4379799423437904247 144846720770400412 Filt/deduped BAM 144846720770400412->9187003930965775870 144846720770400412->3439856786774182579 -830279661706287831 chip.bam2ta_ctl 8174780912156227799 TAG-ALIGN -830279661706287831->8174780912156227799 8174780912156227799->-4379799423437904247 1015989737862927293 Filt/deduped BAM 1015989737862927293->-830279661706287831 1015989737862927293->3439856786774182579 -8951270655342123821 chip.bam2ta_ctl 8633450838749764500 TAG-ALIGN -8951270655342123821->8633450838749764500 8633450838749764500->-4379799423437904247 -6590462131453068453 Filt/deduped BAM -6590462131453068453->-8951270655342123821 -6590462131453068453->3439856786774182579 3752440838943502409 chip.bam2ta_ctl 6773346076004427654 TAG-ALIGN 3752440838943502409->6773346076004427654 6773346076004427654->-4379799423437904247 3456276640368881616 Filt/deduped BAM 3456276640368881616->3752440838943502409 3456276640368881616->3439856786774182579 -4736453715049625835 chip.bam2ta_ctl -3773994265046244358 TAG-ALIGN -4736453715049625835->-3773994265046244358 -3773994265046244358->-4379799423437904247 -4082844323610050743 Filt/deduped BAM -4082844323610050743->-4736453715049625835 -4082844323610050743->3439856786774182579 5655262194418198578 chip.bam2ta_ctl 7201292482538542271 TAG-ALIGN 5655262194418198578->7201292482538542271 7201292482538542271->-4379799423437904247 2928052296635833734 Filt/deduped BAM 2928052296635833734->5655262194418198578 2928052296635833734->3439856786774182579 -1632980899252148840 chip.bam2ta_ctl -1567552847168708176 TAG-ALIGN -1632980899252148840->-1567552847168708176 -1567552847168708176->-4379799423437904247 9146993840625290732 Filt/deduped BAM 9146993840625290732->-1632980899252148840 9146993840625290732->3439856786774182579 6557608574776907037 chip.bam2ta_ctl 179745997349205110 TAG-ALIGN 6557608574776907037->179745997349205110 179745997349205110->-4379799423437904247 2442306597594148816 Filt/deduped BAM 2442306597594148816->6557608574776907037 2442306597594148816->3439856786774182579 -5767607047527757448 chip.bam2ta_ctl -2922413533992370165 TAG-ALIGN -5767607047527757448->-2922413533992370165 -2922413533992370165->-4379799423437904247 -2385788232142786529 Filt/deduped BAM -2385788232142786529->-5767607047527757448 -2385788232142786529->3439856786774182579 2967694630855293845 chip.bam2ta_ctl 3658528510609524235 TAG-ALIGN 2967694630855293845->3658528510609524235 3658528510609524235->-4379799423437904247 3257239129512250557 Filt/deduped BAM 3257239129512250557->2967694630855293845 3257239129512250557->3439856786774182579 -7082710928389651091 chip.bam2ta_ctl -8419416522966597507 TAG-ALIGN -7082710928389651091->-8419416522966597507 -8419416522966597507->-4379799423437904247 6743486582968200266 Filt/deduped BAM 6743486582968200266->-7082710928389651091 6743486582968200266->3439856786774182579 2899796349455762881 chip.bam2ta_ctl 6537581392027646561 TAG-ALIGN 2899796349455762881->6537581392027646561 6537581392027646561->-4379799423437904247 8501925999091959629 Filt/deduped BAM 8501925999091959629->2899796349455762881 8501925999091959629->3439856786774182579 -4189109737868584257 chip.bam2ta_ctl 1311712482473982785 TAG-ALIGN -4189109737868584257->1311712482473982785 1311712482473982785->-4379799423437904247 -935740082236462870 Filt/deduped BAM -935740082236462870->-4189109737868584257 -935740082236462870->3439856786774182579 8285349094169546459 chip.bam2ta_ctl 6702203684018575851 TAG-ALIGN 8285349094169546459->6702203684018575851 6702203684018575851->-4379799423437904247 911710140591509215 Filt/deduped BAM 911710140591509215->8285349094169546459 911710140591509215->3439856786774182579 -8711301695458568652 chip.bam2ta_ctl -975368315040907654 TAG-ALIGN -8711301695458568652->-975368315040907654 -975368315040907654->-4379799423437904247 -5788435762323936254 Filt/deduped BAM -5788435762323936254->-8711301695458568652 -5788435762323936254->3439856786774182579 -8755085440377006087 chip.bam2ta_ctl -7039238606998617464 TAG-ALIGN -8755085440377006087->-7039238606998617464 -7039238606998617464->-4379799423437904247 738595586152817498 Filt/deduped BAM 738595586152817498->-8755085440377006087 738595586152817498->3439856786774182579 -7721133407326947365 IDR Plot ppr -6941851196367057961->-7721133407326947365 3063647014226603056 IDR Peak ppr -6941851196367057961->3063647014226603056 3063647014226603056->-8366102491179629054 -905182940246485714 IDR Plot rep1_vs_rep2 -4695171485924459716->-905182940246485714 6396439033279351523 IDR NPeak rep1_vs_rep2 -4695171485924459716->6396439033279351523 6396439033279351523->-8366102491179629054 9093109704871968292 Overlap Peak rep1_vs_rep2 -8121173596341975632->9093109704871968292 9093109704871968292->5187755527611053944 4496076602137240321 Overlap Peak optimal 5187755527611053944->4496076602137240321 -2587532680705465962 Overlap reproducibility 5187755527611053944->-2587532680705465962 -428964090515448500 IDR Peak optimal -8366102491179629054->-428964090515448500 1962785095850090302 IDR reproducibility -8366102491179629054->1962785095850090302 3527452361170078012 Overlap Peak ppr -4705044292784982814->3527452361170078012 3527452361170078012->5187755527611053944 -4997643806827624118 JSD Plot 3439856786774182579->-4997643806827624118

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/2691412b-a855-4bec-be81-c0c78d56576a/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.486M.pval.signal.bigwig?Expires=1601331716&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=XlSERWp%2FvdtpVsPpwRQ9Tq8F4nqJP%2FQ9k8Qm6fLWSmvcO%2FaeZ8Pqe1k0dLszWSiOpLkRHkrUXCDL5OHM%2BxhTLRqcjiD2sWXnCG0KYvq%2Ftsv4VzpnXT2OuCczdMzoisiw9hGk%2FvH1MO%2F2DSsf698x01OZWJON4HWU8Pf85zPdYOe0%2BqcYnOK7%2BHiisl4pdEBaIpudwDxRB5nhz27PrO%2FKjxaIdD6OP%2F9hGGoz51J2lbW3P%2BYf1ADmZZv67507QA1hG%2FbeCqo%2FiofjcuUd9%2Fjw0lAyfDojkR1MxeBJEoGcKfY2xUNAhzTjRnPhmAsL%2FBeTy8uFEijJTlx0KPZyYhn5kw%3D%3D"
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