File table

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Files	Path
Alignment
Control 1
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/c3548036-7f18-4bdd-9223-fea062e056df/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/9d5f1544-2a4e-4424-b179-6b1d49ca1d65/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF990KCY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF990KCY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF990KCY.crop_101-2bp.nodup.bam
Raw BAM from aligner	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF990KCY.crop_101-2bp.bam
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF990KCY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF052UFC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF052UFC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF052UFC.crop_101-2bp.nodup.bam
Raw BAM from aligner	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF052UFC.crop_101-2bp.bam
TAG-ALIGN	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF052UFC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.300K.regionPeak.gz
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.300K.regionPeak.gz
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.300K.regionPeak.gz
Blacklist-filtered narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeak	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.300K.bfilt.frip.qc
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.300K.bfilt.frip.qc
Cross-correlation Plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF990KCY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF990KCY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF990KCY.crop_101-2bp.dup.qc
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.300K.bfilt.frip.qc
Library complexity QC for filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF990KCY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF990KCY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF990KCY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR log	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.300K.bfilt.frip.qc
Cross-correlation Plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF052UFC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation score	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF052UFC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF052UFC.crop_101-2bp.dup.qc
Fraction of peaks in reads	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.300K.bfilt.frip.qc
Library complexity QC for filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF052UFC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF052UFC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAM	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF052UFC.crop_101-2bp.nodup.samstats.qc
Final HTML report	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON file	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plot	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF990KCY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaks	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaks	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.fc.signal.bigwig
MACS2 signal track (p-val)	gs://encode-processing/caper_out_dir2/chip/678092b4-61d8-4dd3-9a3d-ef81d34ed17f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval.signal.bigwig
Replicate 2
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