File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2bbc1e7f-3933-4c02-8ec9-ede594314af5/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF990KCY.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF990KCY.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF990KCY.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF990KCY.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF990KCY.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF052UFC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF052UFC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF052UFC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF052UFC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF052UFC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF990KCY.crop_101-2bp.nodup.pr1_x_ctl.pooled.346M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF990KCY.crop_101-2bp.nodup.pr2_x_ctl.pooled.346M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF990KCY.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF990KCY.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF990KCY.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF990KCY.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF990KCY.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF990KCY.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF052UFC.crop_101-2bp.nodup.pr1_x_ctl.pooled.333M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF052UFC.crop_101-2bp.nodup.pr2_x_ctl.pooled.333M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF052UFC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF052UFC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF052UFC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF052UFC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF052UFC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF052UFC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF990KCY.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF990KCY.crop_101-2bp.nodup_x_ctl.pooled.346M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/c298b62c-12d6-4a79-9d06-44edd9cb1f47/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF052UFC.crop_101-2bp.nodup_x_ctl.pooled.333M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 5416459421127035532 chip.macs2_signal_track_pooled 1897279596455672620 BW FC 5416459421127035532->1897279596455672620 -7308686289056601794 BW p-val 5416459421127035532->-7308686289056601794 -5762558588819346814 chip.call_peak_pooled 6967847943336031839 Peak (bfilt) -5762558588819346814->6967847943336031839 928313463382022728 Peak -5762558588819346814->928313463382022728 8762315839975527595 chip.idr_ppr 928313463382022728->8762315839975527595 6268291544536650205 chip.idr 928313463382022728->6268291544536650205 7961628294380631190 chip.overlap 928313463382022728->7961628294380631190 -9079103613983743742 chip.overlap_ppr 928313463382022728->-9079103613983743742 8118559486301396204 chip.pool_ta 532137453491997309 TAG-ALIGN 8118559486301396204->532137453491997309 532137453491997309->5416459421127035532 532137453491997309->-5762558588819346814 532137453491997309->8762315839975527595 532137453491997309->6268291544536650205 532137453491997309->7961628294380631190 532137453491997309->-9079103613983743742 2016453991516246537 chip.call_peak 923401124103162496 Peak (bfilt) 2016453991516246537->923401124103162496 138292350257448092 Peak 2016453991516246537->138292350257448092 138292350257448092->6268291544536650205 138292350257448092->7961628294380631190 3413234354524202768 chip.reproducibility_overlap 138292350257448092->3413234354524202768 -4037237679987843605 chip.reproducibility_idr 138292350257448092->-4037237679987843605 -7522924345824951127 chip.bam2ta -4420767289406408582 TAG-ALIGN -7522924345824951127->-4420767289406408582 -4420767289406408582->8118559486301396204 -4420767289406408582->2016453991516246537 6445305301011861741 chip.macs2_signal_track -4420767289406408582->6445305301011861741 -4420767289406408582->8762315839975527595 -4420767289406408582->3413234354524202768 -4420767289406408582->-4037237679987843605 -4420767289406408582->-9079103613983743742 4361305665039653182 chip.filter -4046996468844117340 SAMstats QC 4361305665039653182->-4046996468844117340 9056626446414081509 Filt/deduped BAM 4361305665039653182->9056626446414081509 -5230377186834568922 LibCmplx QC 4361305665039653182->-5230377186834568922 9056626446414081509->-7522924345824951127 5163201969943021501 chip.jsd 9056626446414081509->5163201969943021501 -7739655856518811120 chip.align -1246734323073158000 SAMstats QC -7739655856518811120->-1246734323073158000 8217726901275025912 BAM -7739655856518811120->8217726901275025912 8217726901275025912->4361305665039653182 8260425818368948237 chip.xcor 6635873313579159308 XCOR Plot 8260425818368948237->6635873313579159308 4860927885626320316 BW FC 6445305301011861741->4860927885626320316 5252312901375989096 BW p-val 6445305301011861741->5252312901375989096 -450218102956345885 FASTQ R1 (1) -450218102956345885->-7739655856518811120 -450218102956345885->8260425818368948237 -8627130258302656372 FASTQ R2 (1) -8627130258302656372->-7739655856518811120 8870372249512766062 chip.call_peak -3872711836018955722 Peak (bfilt) 8870372249512766062->-3872711836018955722 -7525316059174230201 Peak 8870372249512766062->-7525316059174230201 -7525316059174230201->6268291544536650205 -7525316059174230201->7961628294380631190 -7525316059174230201->3413234354524202768 -7525316059174230201->-4037237679987843605 -5281334239761298843 chip.bam2ta 52247454613884490 TAG-ALIGN -5281334239761298843->52247454613884490 52247454613884490->8118559486301396204 52247454613884490->8870372249512766062 -3047378555100428151 chip.macs2_signal_track 52247454613884490->-3047378555100428151 52247454613884490->8762315839975527595 52247454613884490->3413234354524202768 52247454613884490->-4037237679987843605 52247454613884490->-9079103613983743742 6836201340124134102 chip.filter 482463900414876909 SAMstats QC 6836201340124134102->482463900414876909 1709220690675425942 Filt/deduped BAM 6836201340124134102->1709220690675425942 6293522473439219164 LibCmplx QC 6836201340124134102->6293522473439219164 1709220690675425942->-5281334239761298843 1709220690675425942->5163201969943021501 -4492161636168824079 chip.align -8298682704283131917 SAMstats QC -4492161636168824079->-8298682704283131917 -4331216017204254668 BAM -4492161636168824079->-4331216017204254668 -4331216017204254668->6836201340124134102 -5780493246118254495 chip.xcor -283479111971542604 XCOR Plot -5780493246118254495->-283479111971542604 6940813959105453294 BW FC -3047378555100428151->6940813959105453294 -719442199760654532 BW p-val -3047378555100428151->-719442199760654532 -9090100036205665305 FASTQ R1 (1) -9090100036205665305->-4492161636168824079 -9090100036205665305->-5780493246118254495 7330377008225804536 FASTQ R2 (1) 7330377008225804536->-4492161636168824079 6598142889024285497 chip.pool_ta_ctl 8851838261274497128 TAG-ALIGN 6598142889024285497->8851838261274497128 8851838261274497128->5416459421127035532 8851838261274497128->-5762558588819346814 8851838261274497128->2016453991516246537 8851838261274497128->6445305301011861741 8851838261274497128->8870372249512766062 8851838261274497128->-3047378555100428151 8851838261274497128->8762315839975527595 8851838261274497128->3413234354524202768 8851838261274497128->-4037237679987843605 8851838261274497128->-9079103613983743742 -5213897696346559021 chip.bam2ta_ctl 597019652737335079 TAG-ALIGN -5213897696346559021->597019652737335079 597019652737335079->6598142889024285497 -3647719131341511894 Filt/deduped BAM -3647719131341511894->-5213897696346559021 -3647719131341511894->5163201969943021501 -3279607153108227996 chip.bam2ta_ctl 8559232209103806005 TAG-ALIGN -3279607153108227996->8559232209103806005 8559232209103806005->6598142889024285497 -4848198639367023624 Filt/deduped BAM -4848198639367023624->-3279607153108227996 -4848198639367023624->5163201969943021501 -454124450715158776 chip.bam2ta_ctl -461532111301286291 TAG-ALIGN -454124450715158776->-461532111301286291 -461532111301286291->6598142889024285497 9135214028299776581 Filt/deduped BAM 9135214028299776581->-454124450715158776 9135214028299776581->5163201969943021501 5461987299072610441 chip.bam2ta_ctl -4430749829859759768 TAG-ALIGN 5461987299072610441->-4430749829859759768 -4430749829859759768->6598142889024285497 2633745175983100136 Filt/deduped BAM 2633745175983100136->5461987299072610441 2633745175983100136->5163201969943021501 4739476483065460726 chip.bam2ta_ctl 4829214873848392985 TAG-ALIGN 4739476483065460726->4829214873848392985 4829214873848392985->6598142889024285497 7731434264258733637 Filt/deduped BAM 7731434264258733637->4739476483065460726 7731434264258733637->5163201969943021501 5379709363229145415 chip.bam2ta_ctl 1852654567157373682 TAG-ALIGN 5379709363229145415->1852654567157373682 1852654567157373682->6598142889024285497 619557076126167050 Filt/deduped BAM 619557076126167050->5379709363229145415 619557076126167050->5163201969943021501 -2643590199572984602 IDR Plot ppr 8762315839975527595->-2643590199572984602 -5988600092650335105 IDR Peak ppr 8762315839975527595->-5988600092650335105 -5988600092650335105->-4037237679987843605 -3863778820654136610 IDR Plot rep1_vs_rep2 6268291544536650205->-3863778820654136610 6830461825206538934 IDR NPeak rep1_vs_rep2 6268291544536650205->6830461825206538934 6830461825206538934->-4037237679987843605 8809884297242397557 Overlap Peak rep1_vs_rep2 7961628294380631190->8809884297242397557 8809884297242397557->3413234354524202768 7819956902557313826 Overlap Peak optimal 3413234354524202768->7819956902557313826 -377773708865147600 Overlap reproducibility 3413234354524202768->-377773708865147600 2614527026649696433 IDR Peak optimal -4037237679987843605->2614527026649696433 -1876261591945481040 IDR reproducibility -4037237679987843605->-1876261591945481040 -5586376143691083692 Overlap Peak ppr -9079103613983743742->-5586376143691083692 -5586376143691083692->3413234354524202768 8167479905858987850 JSD Plot 5163201969943021501->8167479905858987850

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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