File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF904ZYJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF904ZYJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF904ZYJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF904ZYJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF904ZYJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF956EJH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF956EJH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF956EJH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF956EJH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF956EJH.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.478M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.478M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.478M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.478M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF904ZYJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF904ZYJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF904ZYJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF904ZYJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF904ZYJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF904ZYJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF904ZYJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF904ZYJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF956EJH.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF956EJH.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF956EJH.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF956EJH.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF956EJH.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF956EJH.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF956EJH.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF956EJH.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.478M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.478M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.478M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF904ZYJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF904ZYJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF904ZYJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF904ZYJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF904ZYJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF904ZYJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF904ZYJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF904ZYJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF956EJH.crop_101-2bp.nodup.pr1_x_ctl.pooled.210M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF956EJH.crop_101-2bp.nodup.pr2_x_ctl.pooled.210M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF956EJH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF956EJH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF956EJH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF956EJH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF956EJH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF956EJH.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF904ZYJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.478M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.478M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF904ZYJ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/032f523d-76f6-4927-9a89-e0e388ed8ff3/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF956EJH.crop_101-2bp.nodup_x_ctl.pooled.210M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 6603999652810196557 chip.macs2_signal_track_pooled 5067808456812770797 BW FC 6603999652810196557->5067808456812770797 -1469399216111613619 BW p-val 6603999652810196557->-1469399216111613619 2002326580348734425 chip.call_peak_pooled -4223714522207555528 Peak (bfilt) 2002326580348734425->-4223714522207555528 -5939275221053191729 Peak 2002326580348734425->-5939275221053191729 -2408864618301658790 chip.idr_ppr -5939275221053191729->-2408864618301658790 -5277611199896130008 chip.idr -5939275221053191729->-5277611199896130008 7037082631111233316 chip.overlap -5939275221053191729->7037082631111233316 1221174331077311124 chip.overlap_ppr -5939275221053191729->1221174331077311124 -6048853781557449310 chip.pool_ta -4047916929598797540 TAG-ALIGN -6048853781557449310->-4047916929598797540 -4047916929598797540->6603999652810196557 -4047916929598797540->2002326580348734425 -4047916929598797540->-2408864618301658790 -4047916929598797540->-5277611199896130008 -4047916929598797540->7037082631111233316 -4047916929598797540->1221174331077311124 4619199070112379761 chip.call_peak -5792691626598963012 Peak (bfilt) 4619199070112379761->-5792691626598963012 1315112225399879159 Peak 4619199070112379761->1315112225399879159 1315112225399879159->-5277611199896130008 1315112225399879159->7037082631111233316 5872365549111366 chip.reproducibility_overlap 1315112225399879159->5872365549111366 -6925325814884914485 chip.reproducibility_idr 1315112225399879159->-6925325814884914485 -77673227562917664 chip.bam2ta -825894036918581983 TAG-ALIGN -77673227562917664->-825894036918581983 -825894036918581983->-6048853781557449310 -825894036918581983->4619199070112379761 -32720058615616509 chip.macs2_signal_track -825894036918581983->-32720058615616509 -825894036918581983->-2408864618301658790 -825894036918581983->5872365549111366 -825894036918581983->-6925325814884914485 -825894036918581983->1221174331077311124 -8291570697293354458 chip.filter 7887099335487911758 SAMstats QC -8291570697293354458->7887099335487911758 4942827318595396842 Filt/deduped BAM -8291570697293354458->4942827318595396842 5780696422965767961 LibCmplx QC -8291570697293354458->5780696422965767961 4942827318595396842->-77673227562917664 -5048871658323806041 chip.jsd 4942827318595396842->-5048871658323806041 3802931665397827270 chip.jsd 4942827318595396842->3802931665397827270 -2177702918618322659 chip.align 5956464659537757491 SAMstats QC -2177702918618322659->5956464659537757491 4719096191781073385 BAM -2177702918618322659->4719096191781073385 4719096191781073385->-8291570697293354458 -4955130195455165707 chip.xcor 4564652734106350923 XCOR Plot -4955130195455165707->4564652734106350923 8221347205196494867 BW FC -32720058615616509->8221347205196494867 3050600586977476249 BW p-val -32720058615616509->3050600586977476249 -4450859596802107842 FASTQ R1 (1) -4450859596802107842->-2177702918618322659 -4450859596802107842->-4955130195455165707 614644234777552254 FASTQ R2 (1) 614644234777552254->-2177702918618322659 -610870455074093875 chip.call_peak -7448314884205814807 Peak (bfilt) -610870455074093875->-7448314884205814807 -1912221415786947773 Peak -610870455074093875->-1912221415786947773 -1912221415786947773->-5277611199896130008 -1912221415786947773->7037082631111233316 -1912221415786947773->5872365549111366 -1912221415786947773->-6925325814884914485 -5303858144862536010 chip.bam2ta -6568972322383421203 TAG-ALIGN -5303858144862536010->-6568972322383421203 -6568972322383421203->-6048853781557449310 -6568972322383421203->-610870455074093875 6687819556808664481 chip.macs2_signal_track -6568972322383421203->6687819556808664481 -6568972322383421203->-2408864618301658790 -6568972322383421203->5872365549111366 -6568972322383421203->-6925325814884914485 -6568972322383421203->1221174331077311124 -9069070745417294837 chip.filter 334302767419749392 SAMstats QC -9069070745417294837->334302767419749392 -2441496909563550921 Filt/deduped BAM -9069070745417294837->-2441496909563550921 -6246942063536600133 LibCmplx QC -9069070745417294837->-6246942063536600133 -2441496909563550921->-5303858144862536010 -2441496909563550921->-5048871658323806041 -2441496909563550921->3802931665397827270 6740194356898686048 chip.align 4552660759387674865 SAMstats QC 6740194356898686048->4552660759387674865 -3573704539365808472 BAM 6740194356898686048->-3573704539365808472 -3573704539365808472->-9069070745417294837 -5230607665478364042 chip.xcor 2806150683667649725 XCOR Plot -5230607665478364042->2806150683667649725 -3640076923417616605 BW FC 6687819556808664481->-3640076923417616605 39986648561071338 BW p-val 6687819556808664481->39986648561071338 -1925012272166019720 FASTQ R1 (1) -1925012272166019720->6740194356898686048 -1925012272166019720->-5230607665478364042 -1260358146938242360 FASTQ R2 (1) -1260358146938242360->6740194356898686048 -4074092655410515848 chip.pool_ta_ctl -8754024476498774243 TAG-ALIGN -4074092655410515848->-8754024476498774243 -8754024476498774243->6603999652810196557 -8754024476498774243->2002326580348734425 -8754024476498774243->4619199070112379761 -8754024476498774243->-32720058615616509 -8754024476498774243->-610870455074093875 -8754024476498774243->6687819556808664481 -8754024476498774243->-2408864618301658790 -8754024476498774243->5872365549111366 -8754024476498774243->-6925325814884914485 -8754024476498774243->1221174331077311124 -4103015247262923077 chip.bam2ta_ctl -1753546943011449835 TAG-ALIGN -4103015247262923077->-1753546943011449835 -1753546943011449835->-4074092655410515848 -8352651515650270077 Filt/deduped BAM -8352651515650270077->-4103015247262923077 -8352651515650270077->-5048871658323806041 -8352651515650270077->3802931665397827270 1904183615042169827 chip.bam2ta_ctl -2181809476021864088 TAG-ALIGN 1904183615042169827->-2181809476021864088 -2181809476021864088->-4074092655410515848 -4234770068883696809 Filt/deduped BAM -4234770068883696809->1904183615042169827 -4234770068883696809->-5048871658323806041 -4234770068883696809->3802931665397827270 -5841620158446737016 chip.bam2ta_ctl 6949171434703770552 TAG-ALIGN -5841620158446737016->6949171434703770552 6949171434703770552->-4074092655410515848 -8345347069012623339 Filt/deduped BAM -8345347069012623339->-5841620158446737016 -8345347069012623339->-5048871658323806041 -8345347069012623339->3802931665397827270 6189686296791606939 chip.bam2ta_ctl -292849043867726159 TAG-ALIGN 6189686296791606939->-292849043867726159 -292849043867726159->-4074092655410515848 -8279867383737768214 Filt/deduped BAM -8279867383737768214->6189686296791606939 -8279867383737768214->-5048871658323806041 -8279867383737768214->3802931665397827270 -5785466908733964234 chip.bam2ta_ctl -1713363467614985479 TAG-ALIGN -5785466908733964234->-1713363467614985479 -1713363467614985479->-4074092655410515848 -5435142514657118558 Filt/deduped BAM -5435142514657118558->-5785466908733964234 -5435142514657118558->-5048871658323806041 -5435142514657118558->3802931665397827270 -2035159505630682940 chip.bam2ta_ctl -5036580047768816390 TAG-ALIGN -2035159505630682940->-5036580047768816390 -5036580047768816390->-4074092655410515848 5679810790681102454 Filt/deduped BAM 5679810790681102454->-2035159505630682940 5679810790681102454->-5048871658323806041 5679810790681102454->3802931665397827270 5057381060708711735 chip.bam2ta_ctl -2064042659009580303 TAG-ALIGN 5057381060708711735->-2064042659009580303 -2064042659009580303->-4074092655410515848 3784318713702387301 Filt/deduped BAM 3784318713702387301->5057381060708711735 3784318713702387301->-5048871658323806041 3784318713702387301->3802931665397827270 -7511815605372496713 chip.bam2ta_ctl 4821495649328272663 TAG-ALIGN -7511815605372496713->4821495649328272663 4821495649328272663->-4074092655410515848 -1482494590151644440 Filt/deduped BAM -1482494590151644440->-7511815605372496713 -1482494590151644440->-5048871658323806041 -1482494590151644440->3802931665397827270 7207855816241141834 chip.bam2ta_ctl 4485753444406323932 TAG-ALIGN 7207855816241141834->4485753444406323932 4485753444406323932->-4074092655410515848 8072184539061248869 Filt/deduped BAM 8072184539061248869->7207855816241141834 8072184539061248869->-5048871658323806041 8072184539061248869->3802931665397827270 3125393194096846073 chip.bam2ta_ctl -1351359228436922650 TAG-ALIGN 3125393194096846073->-1351359228436922650 -1351359228436922650->-4074092655410515848 1661654297804511987 Filt/deduped BAM 1661654297804511987->3125393194096846073 1661654297804511987->-5048871658323806041 1661654297804511987->3802931665397827270 -387669625150608550 chip.bam2ta_ctl 8318254118130465313 TAG-ALIGN -387669625150608550->8318254118130465313 8318254118130465313->-4074092655410515848 7396591160071642148 Filt/deduped BAM 7396591160071642148->-387669625150608550 7396591160071642148->-5048871658323806041 7396591160071642148->3802931665397827270 242086461348554807 chip.bam2ta_ctl 6009553652141887257 TAG-ALIGN 242086461348554807->6009553652141887257 6009553652141887257->-4074092655410515848 -8024397102540114666 Filt/deduped BAM -8024397102540114666->242086461348554807 -8024397102540114666->-5048871658323806041 -8024397102540114666->3802931665397827270 2226282565186082454 chip.bam2ta_ctl -3417523915313603229 TAG-ALIGN 2226282565186082454->-3417523915313603229 -3417523915313603229->-4074092655410515848 3786532525141099852 Filt/deduped BAM 3786532525141099852->2226282565186082454 3786532525141099852->-5048871658323806041 3786532525141099852->3802931665397827270 -6769290683499088783 chip.bam2ta_ctl -8163231206480498101 TAG-ALIGN -6769290683499088783->-8163231206480498101 -8163231206480498101->-4074092655410515848 2214766695525237008 Filt/deduped BAM 2214766695525237008->-6769290683499088783 2214766695525237008->-5048871658323806041 2214766695525237008->3802931665397827270 -6586769570660849554 chip.bam2ta_ctl 3012860948130838545 TAG-ALIGN -6586769570660849554->3012860948130838545 3012860948130838545->-4074092655410515848 -4727349842794943100 Filt/deduped BAM -4727349842794943100->-6586769570660849554 -4727349842794943100->-5048871658323806041 -4727349842794943100->3802931665397827270 -1744946897752593604 chip.bam2ta_ctl 1075453842183688471 TAG-ALIGN -1744946897752593604->1075453842183688471 1075453842183688471->-4074092655410515848 2026238405962067495 Filt/deduped BAM 2026238405962067495->-1744946897752593604 2026238405962067495->-5048871658323806041 2026238405962067495->3802931665397827270 999460575563799590 chip.bam2ta_ctl 4362502905855567043 TAG-ALIGN 999460575563799590->4362502905855567043 4362502905855567043->-4074092655410515848 8766960442347567888 Filt/deduped BAM 8766960442347567888->999460575563799590 8766960442347567888->-5048871658323806041 8766960442347567888->3802931665397827270 -1657386778760140557 chip.bam2ta_ctl 5637884468681033934 TAG-ALIGN -1657386778760140557->5637884468681033934 5637884468681033934->-4074092655410515848 -2286961802290890063 Filt/deduped BAM -2286961802290890063->-1657386778760140557 -2286961802290890063->-5048871658323806041 -2286961802290890063->3802931665397827270 -1042706645430749382 chip.bam2ta_ctl 8230406757416472058 TAG-ALIGN -1042706645430749382->8230406757416472058 8230406757416472058->-4074092655410515848 7722553700027457473 Filt/deduped BAM 7722553700027457473->-1042706645430749382 7722553700027457473->-5048871658323806041 7722553700027457473->3802931665397827270 -168248621107435862 chip.bam2ta_ctl -3202704395377600733 TAG-ALIGN -168248621107435862->-3202704395377600733 -3202704395377600733->-4074092655410515848 5991178712196526645 Filt/deduped BAM 5991178712196526645->-168248621107435862 5991178712196526645->-5048871658323806041 5991178712196526645->3802931665397827270 -8296442477955018327 chip.bam2ta_ctl -4273481570830265564 TAG-ALIGN -8296442477955018327->-4273481570830265564 -4273481570830265564->-4074092655410515848 -7921695165043027090 Filt/deduped BAM -7921695165043027090->-8296442477955018327 -7921695165043027090->-5048871658323806041 -7921695165043027090->3802931665397827270 -5898866533623056422 chip.bam2ta_ctl 8134027472654658482 TAG-ALIGN -5898866533623056422->8134027472654658482 8134027472654658482->-4074092655410515848 -1808232045842856672 Filt/deduped BAM -1808232045842856672->-5898866533623056422 -1808232045842856672->-5048871658323806041 -1808232045842856672->3802931665397827270 5833489440839318417 chip.bam2ta_ctl -4696240552883076718 TAG-ALIGN 5833489440839318417->-4696240552883076718 -4696240552883076718->-4074092655410515848 3509947941535639778 Filt/deduped BAM 3509947941535639778->5833489440839318417 3509947941535639778->-5048871658323806041 3509947941535639778->3802931665397827270 -2114645777140700824 chip.bam2ta_ctl -6469937879010295404 TAG-ALIGN -2114645777140700824->-6469937879010295404 -6469937879010295404->-4074092655410515848 4661999298606272254 Filt/deduped BAM 4661999298606272254->-2114645777140700824 4661999298606272254->-5048871658323806041 4661999298606272254->3802931665397827270 4015996980748956804 IDR Plot ppr -2408864618301658790->4015996980748956804 3526971417549780417 IDR Peak ppr -2408864618301658790->3526971417549780417 3526971417549780417->-6925325814884914485 287664504735624943 IDR Plot rep1_vs_rep2 -5277611199896130008->287664504735624943 1859790884476416113 IDR NPeak rep1_vs_rep2 -5277611199896130008->1859790884476416113 1859790884476416113->-6925325814884914485 -576113157462776997 Overlap Peak rep1_vs_rep2 7037082631111233316->-576113157462776997 -576113157462776997->5872365549111366 -66030257188554699 Overlap Peak optimal 5872365549111366->-66030257188554699 -244322187077473386 Overlap reproducibility 5872365549111366->-244322187077473386 446406977824391797 IDR Peak optimal -6925325814884914485->446406977824391797 2295257169829693174 IDR reproducibility -6925325814884914485->2295257169829693174 7262002936814443380 Overlap Peak ppr 1221174331077311124->7262002936814443380 7262002936814443380->5872365549111366 -6917771401483446593 JSD Plot -5048871658323806041->-6917771401483446593 3802931665397827270->-6917771401483446593

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