File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF742XIJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF742XIJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF742XIJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF742XIJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF742XIJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF581XPH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF581XPH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF581XPH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF581XPH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF581XPH.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.744M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.744M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.744M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF742XIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF742XIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF742XIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF742XIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF742XIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF742XIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF742XIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF742XIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF581XPH.crop_101-2bp.nodup.pr1_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF581XPH.crop_101-2bp.nodup.pr1_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF581XPH.crop_101-2bp.nodup.pr1_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF581XPH.crop_101-2bp.nodup.pr1_x_ctl.pooled.482M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF581XPH.crop_101-2bp.nodup.pr2_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF581XPH.crop_101-2bp.nodup.pr2_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF581XPH.crop_101-2bp.nodup.pr2_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF581XPH.crop_101-2bp.nodup.pr2_x_ctl.pooled.482M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.744M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF742XIJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF742XIJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF742XIJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF742XIJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF742XIJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF742XIJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF742XIJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF742XIJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF581XPH.crop_101-2bp.nodup.pr1_x_ctl.pooled.482M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF581XPH.crop_101-2bp.nodup.pr2_x_ctl.pooled.482M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF581XPH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF581XPH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF581XPH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF581XPH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF581XPH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/f64e4ada-2097-43a8-8e70-60cb0c8b8e09/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF581XPH.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF742XIJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/6663924d-de1d-4dc9-98d6-30b0d3c91d6c/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.744M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.744M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF742XIJ.crop_101-2bp.nodup_x_ctl.pooled.262M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/f352f339-c02f-4625-b79b-8a7172427c3f/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF581XPH.crop_101-2bp.nodup_x_ctl.pooled.482M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2869271533911632516 chip.macs2_signal_track_pooled 5459613848771737689 BW FC 2869271533911632516->5459613848771737689 -4195644948123743776 BW p-val 2869271533911632516->-4195644948123743776 3573998484321418628 chip.call_peak_pooled 255393303165358707 Peak (bfilt) 3573998484321418628->255393303165358707 3696229353892747116 Peak 3573998484321418628->3696229353892747116 4218822285243523420 chip.idr_ppr 3696229353892747116->4218822285243523420 513265422095371024 chip.idr 3696229353892747116->513265422095371024 -2311232307985308411 chip.overlap 3696229353892747116->-2311232307985308411 -8266221576859272538 chip.overlap_ppr 3696229353892747116->-8266221576859272538 244493583912406708 chip.pool_ta 1114357687129495266 TAG-ALIGN 244493583912406708->1114357687129495266 1114357687129495266->2869271533911632516 1114357687129495266->3573998484321418628 1114357687129495266->4218822285243523420 1114357687129495266->513265422095371024 1114357687129495266->-2311232307985308411 1114357687129495266->-8266221576859272538 -5039647410614515607 chip.call_peak 2974105087775429948 Peak (bfilt) -5039647410614515607->2974105087775429948 6605747661892454283 Peak -5039647410614515607->6605747661892454283 6605747661892454283->513265422095371024 6605747661892454283->-2311232307985308411 -8346441077802640857 chip.reproducibility_overlap 6605747661892454283->-8346441077802640857 -7902887183138951607 chip.reproducibility_idr 6605747661892454283->-7902887183138951607 -3416927712482904550 chip.bam2ta -3049691675392944925 TAG-ALIGN -3416927712482904550->-3049691675392944925 -3049691675392944925->244493583912406708 -3049691675392944925->-5039647410614515607 4977307875716630134 chip.macs2_signal_track -3049691675392944925->4977307875716630134 -3049691675392944925->4218822285243523420 -3049691675392944925->-8346441077802640857 -3049691675392944925->-7902887183138951607 -3049691675392944925->-8266221576859272538 -4140443470826880782 chip.filter -2163343646039071227 SAMstats QC -4140443470826880782->-2163343646039071227 -1739785278439759416 Filt/deduped BAM -4140443470826880782->-1739785278439759416 6235653679221729340 LibCmplx QC -4140443470826880782->6235653679221729340 -1739785278439759416->-3416927712482904550 -5380631110687143765 chip.jsd -1739785278439759416->-5380631110687143765 4007357932094485161 chip.align -8842986992292002095 SAMstats QC 4007357932094485161->-8842986992292002095 94274965543076749 BAM 4007357932094485161->94274965543076749 94274965543076749->-4140443470826880782 -7945902438702599092 chip.xcor 3261352813375700903 XCOR Plot -7945902438702599092->3261352813375700903 -4245930674641913707 BW FC 4977307875716630134->-4245930674641913707 3248328908519235062 BW p-val 4977307875716630134->3248328908519235062 5920560262522030561 FASTQ R1 (1) 5920560262522030561->4007357932094485161 5920560262522030561->-7945902438702599092 7089854884322147722 FASTQ R2 (1) 7089854884322147722->4007357932094485161 5371198297608017145 chip.call_peak -8678182024400654489 Peak (bfilt) 5371198297608017145->-8678182024400654489 7357648475642446372 Peak 5371198297608017145->7357648475642446372 7357648475642446372->513265422095371024 7357648475642446372->-2311232307985308411 7357648475642446372->-8346441077802640857 7357648475642446372->-7902887183138951607 -4569811945802729221 chip.bam2ta -7457277201538780252 TAG-ALIGN -4569811945802729221->-7457277201538780252 -7457277201538780252->244493583912406708 -7457277201538780252->5371198297608017145 -3457519521892757004 chip.macs2_signal_track -7457277201538780252->-3457519521892757004 -7457277201538780252->4218822285243523420 -7457277201538780252->-8346441077802640857 -7457277201538780252->-7902887183138951607 -7457277201538780252->-8266221576859272538 1680870935679946210 chip.filter -5055356746965844591 SAMstats QC 1680870935679946210->-5055356746965844591 -4439675282844280657 Filt/deduped BAM 1680870935679946210->-4439675282844280657 -6906855241224229651 LibCmplx QC 1680870935679946210->-6906855241224229651 -4439675282844280657->-4569811945802729221 -4439675282844280657->-5380631110687143765 9080986607860418205 chip.align -5736458124516918700 SAMstats QC 9080986607860418205->-5736458124516918700 6128898446772297648 BAM 9080986607860418205->6128898446772297648 6128898446772297648->1680870935679946210 -7513936909102187683 chip.xcor 2130138877705249226 XCOR Plot -7513936909102187683->2130138877705249226 158921041462902789 BW FC -3457519521892757004->158921041462902789 3181059928464146376 BW p-val -3457519521892757004->3181059928464146376 -7254164558142292173 FASTQ R1 (1) -7254164558142292173->9080986607860418205 -7254164558142292173->-7513936909102187683 -7279620572931482964 FASTQ R2 (1) -7279620572931482964->9080986607860418205 -1025015534289532478 chip.pool_ta_ctl 3217640280942438318 TAG-ALIGN -1025015534289532478->3217640280942438318 3217640280942438318->2869271533911632516 3217640280942438318->3573998484321418628 3217640280942438318->-5039647410614515607 3217640280942438318->4977307875716630134 3217640280942438318->5371198297608017145 3217640280942438318->-3457519521892757004 3217640280942438318->4218822285243523420 3217640280942438318->-8346441077802640857 3217640280942438318->-7902887183138951607 3217640280942438318->-8266221576859272538 258726392915379695 chip.bam2ta_ctl 4798463645364317346 TAG-ALIGN 258726392915379695->4798463645364317346 4798463645364317346->-1025015534289532478 -9143905764126838699 Filt/deduped BAM -9143905764126838699->258726392915379695 -9143905764126838699->-5380631110687143765 1941653769249769515 chip.bam2ta_ctl 7707219387367509919 TAG-ALIGN 1941653769249769515->7707219387367509919 7707219387367509919->-1025015534289532478 -6467303982280416807 Filt/deduped BAM -6467303982280416807->1941653769249769515 -6467303982280416807->-5380631110687143765 6325310528700543019 chip.bam2ta_ctl -7287880357811689321 TAG-ALIGN 6325310528700543019->-7287880357811689321 -7287880357811689321->-1025015534289532478 -4070163627449073232 Filt/deduped BAM -4070163627449073232->6325310528700543019 -4070163627449073232->-5380631110687143765 6927240898527329739 chip.bam2ta_ctl 371627714874441043 TAG-ALIGN 6927240898527329739->371627714874441043 371627714874441043->-1025015534289532478 -240102618484935293 Filt/deduped BAM -240102618484935293->6927240898527329739 -240102618484935293->-5380631110687143765 -5648622692066474358 chip.bam2ta_ctl 8155926917372498702 TAG-ALIGN -5648622692066474358->8155926917372498702 8155926917372498702->-1025015534289532478 -1276610553401761608 Filt/deduped BAM -1276610553401761608->-5648622692066474358 -1276610553401761608->-5380631110687143765 -7011463102766478832 chip.bam2ta_ctl -6023074609460210677 TAG-ALIGN -7011463102766478832->-6023074609460210677 -6023074609460210677->-1025015534289532478 1481435265236735946 Filt/deduped BAM 1481435265236735946->-7011463102766478832 1481435265236735946->-5380631110687143765 6525217603936392601 chip.bam2ta_ctl 3352026671828452725 TAG-ALIGN 6525217603936392601->3352026671828452725 3352026671828452725->-1025015534289532478 3848124971234520032 Filt/deduped BAM 3848124971234520032->6525217603936392601 3848124971234520032->-5380631110687143765 4669920834289638569 chip.bam2ta_ctl -3537792949329664736 TAG-ALIGN 4669920834289638569->-3537792949329664736 -3537792949329664736->-1025015534289532478 3642256784884754268 Filt/deduped BAM 3642256784884754268->4669920834289638569 3642256784884754268->-5380631110687143765 -3950844423860252661 chip.bam2ta_ctl -968201516454708618 TAG-ALIGN -3950844423860252661->-968201516454708618 -968201516454708618->-1025015534289532478 5078535290825043405 Filt/deduped BAM 5078535290825043405->-3950844423860252661 5078535290825043405->-5380631110687143765 1785137501501889860 chip.bam2ta_ctl -3568830370585059707 TAG-ALIGN 1785137501501889860->-3568830370585059707 -3568830370585059707->-1025015534289532478 -6905177133043957572 Filt/deduped BAM -6905177133043957572->1785137501501889860 -6905177133043957572->-5380631110687143765 -2267607174833507213 chip.bam2ta_ctl 5539121395912520002 TAG-ALIGN -2267607174833507213->5539121395912520002 5539121395912520002->-1025015534289532478 -1907869044281109257 Filt/deduped BAM -1907869044281109257->-2267607174833507213 -1907869044281109257->-5380631110687143765 -1193142980470038707 chip.bam2ta_ctl 4073110484315796399 TAG-ALIGN -1193142980470038707->4073110484315796399 4073110484315796399->-1025015534289532478 -5106256276651776407 Filt/deduped BAM -5106256276651776407->-1193142980470038707 -5106256276651776407->-5380631110687143765 4997021404002442203 chip.bam2ta_ctl 8532318520699129174 TAG-ALIGN 4997021404002442203->8532318520699129174 8532318520699129174->-1025015534289532478 5220546795275254937 Filt/deduped BAM 5220546795275254937->4997021404002442203 5220546795275254937->-5380631110687143765 2201475291101288757 chip.bam2ta_ctl -546824474488117085 TAG-ALIGN 2201475291101288757->-546824474488117085 -546824474488117085->-1025015534289532478 -1718382033904285505 Filt/deduped BAM -1718382033904285505->2201475291101288757 -1718382033904285505->-5380631110687143765 2662674399926659238 chip.bam2ta_ctl -7381787469785997129 TAG-ALIGN 2662674399926659238->-7381787469785997129 -7381787469785997129->-1025015534289532478 8479601472448307857 Filt/deduped BAM 8479601472448307857->2662674399926659238 8479601472448307857->-5380631110687143765 2920070871744782361 chip.bam2ta_ctl -7662564402990112240 TAG-ALIGN 2920070871744782361->-7662564402990112240 -7662564402990112240->-1025015534289532478 -7226003012378122252 Filt/deduped BAM -7226003012378122252->2920070871744782361 -7226003012378122252->-5380631110687143765 -6967535541572130815 chip.bam2ta_ctl 5242466801311103071 TAG-ALIGN -6967535541572130815->5242466801311103071 5242466801311103071->-1025015534289532478 -4773110743603446188 Filt/deduped BAM -4773110743603446188->-6967535541572130815 -4773110743603446188->-5380631110687143765 8328908844995142601 chip.bam2ta_ctl -6199897788451449277 TAG-ALIGN 8328908844995142601->-6199897788451449277 -6199897788451449277->-1025015534289532478 989310225181724967 Filt/deduped BAM 989310225181724967->8328908844995142601 989310225181724967->-5380631110687143765 -5685276291211022092 chip.bam2ta_ctl -7503493695925585126 TAG-ALIGN -5685276291211022092->-7503493695925585126 -7503493695925585126->-1025015534289532478 1160206501683250892 Filt/deduped BAM 1160206501683250892->-5685276291211022092 1160206501683250892->-5380631110687143765 4786505906671800428 chip.bam2ta_ctl 2646091508135270267 TAG-ALIGN 4786505906671800428->2646091508135270267 2646091508135270267->-1025015534289532478 114844147550349240 Filt/deduped BAM 114844147550349240->4786505906671800428 114844147550349240->-5380631110687143765 -7886331912835912625 chip.bam2ta_ctl 2171809835776378083 TAG-ALIGN -7886331912835912625->2171809835776378083 2171809835776378083->-1025015534289532478 -3355793582603745026 Filt/deduped BAM -3355793582603745026->-7886331912835912625 -3355793582603745026->-5380631110687143765 1487839262694652205 chip.bam2ta_ctl 8518067316660433261 TAG-ALIGN 1487839262694652205->8518067316660433261 8518067316660433261->-1025015534289532478 -6204048044215451443 Filt/deduped BAM -6204048044215451443->1487839262694652205 -6204048044215451443->-5380631110687143765 -5492926015350514928 chip.bam2ta_ctl 6019237505832910076 TAG-ALIGN -5492926015350514928->6019237505832910076 6019237505832910076->-1025015534289532478 -2262469445267156734 Filt/deduped BAM -2262469445267156734->-5492926015350514928 -2262469445267156734->-5380631110687143765 1444786889042401117 chip.bam2ta_ctl -8955645371310660855 TAG-ALIGN 1444786889042401117->-8955645371310660855 -8955645371310660855->-1025015534289532478 9075646871850520927 Filt/deduped BAM 9075646871850520927->1444786889042401117 9075646871850520927->-5380631110687143765 6196754708290026674 IDR Plot ppr 4218822285243523420->6196754708290026674 1861901776241515735 IDR Peak ppr 4218822285243523420->1861901776241515735 1861901776241515735->-7902887183138951607 -5619995374385570159 IDR Plot rep1_vs_rep2 513265422095371024->-5619995374385570159 86707058658543844 IDR NPeak rep1_vs_rep2 513265422095371024->86707058658543844 86707058658543844->-7902887183138951607 1250091638271857104 Overlap Peak rep1_vs_rep2 -2311232307985308411->1250091638271857104 1250091638271857104->-8346441077802640857 4233417129970530270 Overlap Peak optimal -8346441077802640857->4233417129970530270 -4480625274595282476 Overlap reproducibility -8346441077802640857->-4480625274595282476 126470003608531626 IDR Peak optimal -7902887183138951607->126470003608531626 -3898311921589153005 IDR reproducibility -7902887183138951607->-3898311921589153005 -7255474280419545567 Overlap Peak ppr -8266221576859272538->-7255474280419545567 -7255474280419545567->-8346441077802640857 166857689013112762 JSD Plot -5380631110687143765->166857689013112762

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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