File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF539JMO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF539JMO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF539JMO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF539JMO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF539JMO.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF549IKB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF549IKB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF549IKB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF549IKB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF549IKB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF539JMO.crop_101-2bp.nodup.pr1_x_ctl.pooled.272M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF539JMO.crop_101-2bp.nodup.pr1_x_ctl.pooled.272M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF539JMO.crop_101-2bp.nodup.pr1_x_ctl.pooled.272M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF539JMO.crop_101-2bp.nodup.pr1_x_ctl.pooled.272M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF539JMO.crop_101-2bp.nodup.pr2_x_ctl.pooled.272M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF539JMO.crop_101-2bp.nodup.pr2_x_ctl.pooled.272M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF539JMO.crop_101-2bp.nodup.pr2_x_ctl.pooled.272M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF539JMO.crop_101-2bp.nodup.pr2_x_ctl.pooled.272M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF549IKB.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF549IKB.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF549IKB.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF549IKB.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF549IKB.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF549IKB.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF549IKB.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF549IKB.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF539JMO.crop_101-2bp.nodup.pr1_x_ctl.pooled.272M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF539JMO.crop_101-2bp.nodup.pr2_x_ctl.pooled.272M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF539JMO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF539JMO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF539JMO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF539JMO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF539JMO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF539JMO.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF549IKB.crop_101-2bp.nodup.pr1_x_ctl.pooled.267M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF549IKB.crop_101-2bp.nodup.pr2_x_ctl.pooled.267M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF549IKB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF549IKB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF549IKB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF549IKB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF549IKB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF549IKB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF539JMO.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.539M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.539M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF539JMO.crop_101-2bp.nodup_x_ctl.pooled.272M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/74fc2d1d-111e-472a-9606-53a34558d737/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF549IKB.crop_101-2bp.nodup_x_ctl.pooled.267M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -1885962193107951082 chip.macs2_signal_track_pooled 2759971391108407949 BW FC -1885962193107951082->2759971391108407949 -5716534220914146466 BW p-val -1885962193107951082->-5716534220914146466 6824955989837442059 chip.call_peak_pooled -6733782100083028152 Peak (bfilt) 6824955989837442059->-6733782100083028152 3258265194286941138 Peak 6824955989837442059->3258265194286941138 -5939635137742526166 chip.idr_ppr 3258265194286941138->-5939635137742526166 -834948710312564608 chip.idr 3258265194286941138->-834948710312564608 2510579677697290747 chip.overlap 3258265194286941138->2510579677697290747 3665466483535183987 chip.overlap_ppr 3258265194286941138->3665466483535183987 -746748961698848925 chip.pool_ta 623425971269955375 TAG-ALIGN -746748961698848925->623425971269955375 623425971269955375->-1885962193107951082 623425971269955375->6824955989837442059 623425971269955375->-5939635137742526166 623425971269955375->-834948710312564608 623425971269955375->2510579677697290747 623425971269955375->3665466483535183987 -1759807731034980822 chip.call_peak 3236622144385103824 Peak (bfilt) -1759807731034980822->3236622144385103824 1312491250695403518 Peak -1759807731034980822->1312491250695403518 1312491250695403518->-834948710312564608 1312491250695403518->2510579677697290747 -3311636782966300114 chip.reproducibility_overlap 1312491250695403518->-3311636782966300114 2930365953087457647 chip.reproducibility_idr 1312491250695403518->2930365953087457647 3883726762210017907 chip.bam2ta 7793341666366975693 TAG-ALIGN 3883726762210017907->7793341666366975693 7793341666366975693->-746748961698848925 7793341666366975693->-1759807731034980822 4972082772502049399 chip.macs2_signal_track 7793341666366975693->4972082772502049399 7793341666366975693->-5939635137742526166 7793341666366975693->-3311636782966300114 7793341666366975693->2930365953087457647 7793341666366975693->3665466483535183987 1003209487345554435 chip.filter -1177646829841682041 SAMstats QC 1003209487345554435->-1177646829841682041 26002641510026223 Filt/deduped BAM 1003209487345554435->26002641510026223 -7718718951422194381 LibCmplx QC 1003209487345554435->-7718718951422194381 26002641510026223->3883726762210017907 1315775791839340054 chip.jsd 26002641510026223->1315775791839340054 5803609574397642318 chip.align -1219411486854845571 SAMstats QC 5803609574397642318->-1219411486854845571 -2629099698681106006 BAM 5803609574397642318->-2629099698681106006 -2629099698681106006->1003209487345554435 -1397711095783451306 chip.xcor -5265401722144445866 XCOR Plot -1397711095783451306->-5265401722144445866 4498675803434062128 BW FC 4972082772502049399->4498675803434062128 -9169990177387912160 BW p-val 4972082772502049399->-9169990177387912160 -3349259279886940916 FASTQ R1 (1) -3349259279886940916->5803609574397642318 -3349259279886940916->-1397711095783451306 -6896293157768891076 FASTQ R2 (1) -6896293157768891076->5803609574397642318 5958931070991972956 chip.call_peak 4374268149867518386 Peak (bfilt) 5958931070991972956->4374268149867518386 6270933462693746028 Peak 5958931070991972956->6270933462693746028 6270933462693746028->-834948710312564608 6270933462693746028->2510579677697290747 6270933462693746028->-3311636782966300114 6270933462693746028->2930365953087457647 -3957206035600400266 chip.bam2ta 4115678237429233160 TAG-ALIGN -3957206035600400266->4115678237429233160 4115678237429233160->-746748961698848925 4115678237429233160->5958931070991972956 8388002635703659377 chip.macs2_signal_track 4115678237429233160->8388002635703659377 4115678237429233160->-5939635137742526166 4115678237429233160->-3311636782966300114 4115678237429233160->2930365953087457647 4115678237429233160->3665466483535183987 -6273083387640438163 chip.filter 2412219435484989872 SAMstats QC -6273083387640438163->2412219435484989872 8581386139471514878 Filt/deduped BAM -6273083387640438163->8581386139471514878 7990616621858740894 LibCmplx QC -6273083387640438163->7990616621858740894 8581386139471514878->-3957206035600400266 8581386139471514878->1315775791839340054 -5342619597888602895 chip.align 1881537369840006010 SAMstats QC -5342619597888602895->1881537369840006010 6960464930917589272 BAM -5342619597888602895->6960464930917589272 6960464930917589272->-6273083387640438163 6629954171462387700 chip.xcor 8621275638427465872 XCOR Plot 6629954171462387700->8621275638427465872 2496878046561593981 BW FC 8388002635703659377->2496878046561593981 -1905750981633676160 BW p-val 8388002635703659377->-1905750981633676160 1565815937499956386 FASTQ R1 (1) 1565815937499956386->-5342619597888602895 1565815937499956386->6629954171462387700 -268521780951196163 FASTQ R2 (1) -268521780951196163->-5342619597888602895 -4566188716721586144 chip.pool_ta_ctl -8954435407344364741 TAG-ALIGN -4566188716721586144->-8954435407344364741 -8954435407344364741->-1885962193107951082 -8954435407344364741->6824955989837442059 -8954435407344364741->-1759807731034980822 -8954435407344364741->4972082772502049399 -8954435407344364741->5958931070991972956 -8954435407344364741->8388002635703659377 -8954435407344364741->-5939635137742526166 -8954435407344364741->-3311636782966300114 -8954435407344364741->2930365953087457647 -8954435407344364741->3665466483535183987 3639476861523810052 chip.bam2ta_ctl -4787188376251430333 TAG-ALIGN 3639476861523810052->-4787188376251430333 -4787188376251430333->-4566188716721586144 -4086582907475575394 Filt/deduped BAM -4086582907475575394->3639476861523810052 -4086582907475575394->1315775791839340054 -7595278136017785940 chip.bam2ta_ctl 4664180759300070086 TAG-ALIGN -7595278136017785940->4664180759300070086 4664180759300070086->-4566188716721586144 3351988587744094374 Filt/deduped BAM 3351988587744094374->-7595278136017785940 3351988587744094374->1315775791839340054 -5688640705882152486 chip.bam2ta_ctl -5782388134600123525 TAG-ALIGN -5688640705882152486->-5782388134600123525 -5782388134600123525->-4566188716721586144 -6002984387044721426 Filt/deduped BAM -6002984387044721426->-5688640705882152486 -6002984387044721426->1315775791839340054 -5891665481960501930 chip.bam2ta_ctl 3004025468200654442 TAG-ALIGN -5891665481960501930->3004025468200654442 3004025468200654442->-4566188716721586144 -1680269364241731138 Filt/deduped BAM -1680269364241731138->-5891665481960501930 -1680269364241731138->1315775791839340054 3706552650940236363 chip.bam2ta_ctl -5815872860640579053 TAG-ALIGN 3706552650940236363->-5815872860640579053 -5815872860640579053->-4566188716721586144 -8369069474982409291 Filt/deduped BAM -8369069474982409291->3706552650940236363 -8369069474982409291->1315775791839340054 -4147635475238881222 chip.bam2ta_ctl 8190866731058665133 TAG-ALIGN -4147635475238881222->8190866731058665133 8190866731058665133->-4566188716721586144 8997159709736426053 Filt/deduped BAM 8997159709736426053->-4147635475238881222 8997159709736426053->1315775791839340054 9169142780520647611 chip.bam2ta_ctl -100774380899277430 TAG-ALIGN 9169142780520647611->-100774380899277430 -100774380899277430->-4566188716721586144 -6638108133158123884 Filt/deduped BAM -6638108133158123884->9169142780520647611 -6638108133158123884->1315775791839340054 2724118618838011315 chip.bam2ta_ctl -8759072037109473757 TAG-ALIGN 2724118618838011315->-8759072037109473757 -8759072037109473757->-4566188716721586144 -3034377433403919708 Filt/deduped BAM -3034377433403919708->2724118618838011315 -3034377433403919708->1315775791839340054 -3699654713767562734 chip.bam2ta_ctl -7826725204170638397 TAG-ALIGN -3699654713767562734->-7826725204170638397 -7826725204170638397->-4566188716721586144 6916802717798093136 Filt/deduped BAM 6916802717798093136->-3699654713767562734 6916802717798093136->1315775791839340054 -7371858539424058854 chip.bam2ta_ctl 2971322361912965082 TAG-ALIGN -7371858539424058854->2971322361912965082 2971322361912965082->-4566188716721586144 9153164033238243628 Filt/deduped BAM 9153164033238243628->-7371858539424058854 9153164033238243628->1315775791839340054 -5082689887322437914 chip.bam2ta_ctl 6242080910129861858 TAG-ALIGN -5082689887322437914->6242080910129861858 6242080910129861858->-4566188716721586144 -5450735339075122603 Filt/deduped BAM -5450735339075122603->-5082689887322437914 -5450735339075122603->1315775791839340054 214027936409126692 chip.bam2ta_ctl -3111692547657754230 TAG-ALIGN 214027936409126692->-3111692547657754230 -3111692547657754230->-4566188716721586144 -3779978613372750828 Filt/deduped BAM -3779978613372750828->214027936409126692 -3779978613372750828->1315775791839340054 3141943222856238915 chip.bam2ta_ctl 6835404419678829244 TAG-ALIGN 3141943222856238915->6835404419678829244 6835404419678829244->-4566188716721586144 2954843397865533748 Filt/deduped BAM 2954843397865533748->3141943222856238915 2954843397865533748->1315775791839340054 -6970596027535581793 chip.bam2ta_ctl -3224111007679555114 TAG-ALIGN -6970596027535581793->-3224111007679555114 -3224111007679555114->-4566188716721586144 -3927648565342720487 Filt/deduped BAM -3927648565342720487->-6970596027535581793 -3927648565342720487->1315775791839340054 -6173342102928431114 chip.bam2ta_ctl 3831031111198111964 TAG-ALIGN -6173342102928431114->3831031111198111964 3831031111198111964->-4566188716721586144 8742745812880762259 Filt/deduped BAM 8742745812880762259->-6173342102928431114 8742745812880762259->1315775791839340054 -2471400805267542532 chip.bam2ta_ctl 2658617851322965150 TAG-ALIGN -2471400805267542532->2658617851322965150 2658617851322965150->-4566188716721586144 2692733067946698972 Filt/deduped BAM 2692733067946698972->-2471400805267542532 2692733067946698972->1315775791839340054 8019652487319450947 chip.bam2ta_ctl 8675983986082473395 TAG-ALIGN 8019652487319450947->8675983986082473395 8675983986082473395->-4566188716721586144 -5243671495465970207 Filt/deduped BAM -5243671495465970207->8019652487319450947 -5243671495465970207->1315775791839340054 1500167963306203025 chip.bam2ta_ctl -5574847163306300561 TAG-ALIGN 1500167963306203025->-5574847163306300561 -5574847163306300561->-4566188716721586144 4533422235241217724 Filt/deduped BAM 4533422235241217724->1500167963306203025 4533422235241217724->1315775791839340054 7989412344732817102 chip.bam2ta_ctl 1547234046484847584 TAG-ALIGN 7989412344732817102->1547234046484847584 1547234046484847584->-4566188716721586144 -7828233791124723109 Filt/deduped BAM -7828233791124723109->7989412344732817102 -7828233791124723109->1315775791839340054 1790778045677960665 chip.bam2ta_ctl -4398987290376642940 TAG-ALIGN 1790778045677960665->-4398987290376642940 -4398987290376642940->-4566188716721586144 -2871763161245582793 Filt/deduped BAM -2871763161245582793->1790778045677960665 -2871763161245582793->1315775791839340054 4412905400579297823 chip.bam2ta_ctl -6342478506851861106 TAG-ALIGN 4412905400579297823->-6342478506851861106 -6342478506851861106->-4566188716721586144 4870065214472775210 Filt/deduped BAM 4870065214472775210->4412905400579297823 4870065214472775210->1315775791839340054 -5844143553432507416 chip.bam2ta_ctl -2537984950736399907 TAG-ALIGN -5844143553432507416->-2537984950736399907 -2537984950736399907->-4566188716721586144 -386819099133668741 Filt/deduped BAM -386819099133668741->-5844143553432507416 -386819099133668741->1315775791839340054 7666595494540736516 chip.bam2ta_ctl -7751801289403043921 TAG-ALIGN 7666595494540736516->-7751801289403043921 -7751801289403043921->-4566188716721586144 -2620191104641217552 Filt/deduped BAM -2620191104641217552->7666595494540736516 -2620191104641217552->1315775791839340054 6210124884902685575 chip.bam2ta_ctl -8259256155661430784 TAG-ALIGN 6210124884902685575->-8259256155661430784 -8259256155661430784->-4566188716721586144 -972025316206783135 Filt/deduped BAM -972025316206783135->6210124884902685575 -972025316206783135->1315775791839340054 2240184401264001104 IDR Plot ppr -5939635137742526166->2240184401264001104 -6318959588437203028 IDR Peak ppr -5939635137742526166->-6318959588437203028 -6318959588437203028->2930365953087457647 1334799818822465359 IDR Plot rep1_vs_rep2 -834948710312564608->1334799818822465359 5852203390897690062 IDR NPeak rep1_vs_rep2 -834948710312564608->5852203390897690062 5852203390897690062->2930365953087457647 -5756858077018558027 Overlap Peak rep1_vs_rep2 2510579677697290747->-5756858077018558027 -5756858077018558027->-3311636782966300114 5575613432887919078 Overlap Peak optimal -3311636782966300114->5575613432887919078 6267942151441506333 Overlap reproducibility -3311636782966300114->6267942151441506333 2849795506576764151 IDR Peak optimal 2930365953087457647->2849795506576764151 3301251568654698277 IDR reproducibility 2930365953087457647->3301251568654698277 -7704272775616626269 Overlap Peak ppr 3665466483535183987->-7704272775616626269 -7704272775616626269->-3311636782966300114 364084464268557915 JSD Plot 1315775791839340054->364084464268557915

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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