File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF710WZA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF710WZA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF710WZA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF710WZA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF710WZA.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF962THE.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF962THE.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF962THE.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF962THE.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF962THE.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.507M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.507M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.507M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.507M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF710WZA.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF710WZA.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF710WZA.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF710WZA.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF710WZA.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF710WZA.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF710WZA.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF710WZA.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF962THE.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF962THE.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF962THE.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF962THE.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF962THE.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF962THE.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF962THE.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF962THE.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.507M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.507M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.507M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF710WZA.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF710WZA.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF710WZA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF710WZA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF710WZA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF710WZA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF710WZA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF710WZA.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF962THE.crop_101-2bp.nodup.pr1_x_ctl.pooled.251M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF962THE.crop_101-2bp.nodup.pr2_x_ctl.pooled.251M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF962THE.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF962THE.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF962THE.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF962THE.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF962THE.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF962THE.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF710WZA.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.507M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.507M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF710WZA.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF962THE.crop_101-2bp.nodup_x_ctl.pooled.251M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 6860661500209637785 chip.macs2_signal_track_pooled 5093719098940370702 BW FC 6860661500209637785->5093719098940370702 -6295410663311617704 BW p-val 6860661500209637785->-6295410663311617704 2852313052368319167 chip.call_peak_pooled -8022528087417058629 Peak (bfilt) 2852313052368319167->-8022528087417058629 -2899380787015327495 Peak 2852313052368319167->-2899380787015327495 8046697211039403972 chip.idr_ppr -2899380787015327495->8046697211039403972 4409917335966443493 chip.idr -2899380787015327495->4409917335966443493 -9178460901468176230 chip.overlap -2899380787015327495->-9178460901468176230 3305222404196838460 chip.overlap_ppr -2899380787015327495->3305222404196838460 2376683393470100949 chip.pool_ta 1227893388949371079 TAG-ALIGN 2376683393470100949->1227893388949371079 1227893388949371079->6860661500209637785 1227893388949371079->2852313052368319167 1227893388949371079->8046697211039403972 1227893388949371079->4409917335966443493 1227893388949371079->-9178460901468176230 1227893388949371079->3305222404196838460 907257772969066301 chip.call_peak 7269636336108392895 Peak (bfilt) 907257772969066301->7269636336108392895 -2262827569716552482 Peak 907257772969066301->-2262827569716552482 -2262827569716552482->4409917335966443493 -2262827569716552482->-9178460901468176230 411924449081865005 chip.reproducibility_overlap -2262827569716552482->411924449081865005 3952207562274355902 chip.reproducibility_idr -2262827569716552482->3952207562274355902 -8438358281402771582 chip.bam2ta -4442778279974444049 TAG-ALIGN -8438358281402771582->-4442778279974444049 -4442778279974444049->2376683393470100949 -4442778279974444049->907257772969066301 -2627740406137256797 chip.macs2_signal_track -4442778279974444049->-2627740406137256797 -4442778279974444049->8046697211039403972 -4442778279974444049->411924449081865005 -4442778279974444049->3952207562274355902 -4442778279974444049->3305222404196838460 1467011719425197647 chip.filter -7437556767986602132 SAMstats QC 1467011719425197647->-7437556767986602132 4319674661704907211 Filt/deduped BAM 1467011719425197647->4319674661704907211 -3080312318721992237 LibCmplx QC 1467011719425197647->-3080312318721992237 4319674661704907211->-8438358281402771582 1850165348975321928 chip.jsd 4319674661704907211->1850165348975321928 5275639861127383473 chip.align 1887191147393799759 SAMstats QC 5275639861127383473->1887191147393799759 -7352447409687481324 BAM 5275639861127383473->-7352447409687481324 -7352447409687481324->1467011719425197647 -3530695233592906046 chip.xcor -8434030405787226602 XCOR Plot -3530695233592906046->-8434030405787226602 8253549955223378331 BW FC -2627740406137256797->8253549955223378331 -3725479430906599867 BW p-val -2627740406137256797->-3725479430906599867 878584631343940278 FASTQ R1 (1) 878584631343940278->5275639861127383473 878584631343940278->-3530695233592906046 -786546806898746144 FASTQ R2 (1) -786546806898746144->5275639861127383473 -8821056878143251547 chip.call_peak -2560198825344217819 Peak (bfilt) -8821056878143251547->-2560198825344217819 -5319139648612325544 Peak -8821056878143251547->-5319139648612325544 -5319139648612325544->4409917335966443493 -5319139648612325544->-9178460901468176230 -5319139648612325544->411924449081865005 -5319139648612325544->3952207562274355902 7273172042205932427 chip.bam2ta -6727832922175410305 TAG-ALIGN 7273172042205932427->-6727832922175410305 -6727832922175410305->2376683393470100949 -6727832922175410305->-8821056878143251547 2353839728091074050 chip.macs2_signal_track -6727832922175410305->2353839728091074050 -6727832922175410305->8046697211039403972 -6727832922175410305->411924449081865005 -6727832922175410305->3952207562274355902 -6727832922175410305->3305222404196838460 1349259584532885867 chip.filter 5851799608185713855 SAMstats QC 1349259584532885867->5851799608185713855 -4560570427384686319 Filt/deduped BAM 1349259584532885867->-4560570427384686319 7496181381181768148 LibCmplx QC 1349259584532885867->7496181381181768148 -4560570427384686319->7273172042205932427 -4560570427384686319->1850165348975321928 5588353481861336973 chip.align -7772885493220336784 SAMstats QC 5588353481861336973->-7772885493220336784 -8039825024101625646 BAM 5588353481861336973->-8039825024101625646 -8039825024101625646->1349259584532885867 8000448138772282888 chip.xcor -1740591367815538356 XCOR Plot 8000448138772282888->-1740591367815538356 1232087203324186776 BW FC 2353839728091074050->1232087203324186776 -6601909823658839814 BW p-val 2353839728091074050->-6601909823658839814 -2658435354868318837 FASTQ R1 (1) -2658435354868318837->5588353481861336973 -2658435354868318837->8000448138772282888 -2797842118717622884 FASTQ R2 (1) -2797842118717622884->5588353481861336973 -8145453658778638381 chip.pool_ta_ctl -5763725961728557971 TAG-ALIGN -8145453658778638381->-5763725961728557971 -5763725961728557971->6860661500209637785 -5763725961728557971->2852313052368319167 -5763725961728557971->907257772969066301 -5763725961728557971->-2627740406137256797 -5763725961728557971->-8821056878143251547 -5763725961728557971->2353839728091074050 -5763725961728557971->8046697211039403972 -5763725961728557971->411924449081865005 -5763725961728557971->3952207562274355902 -5763725961728557971->3305222404196838460 4680979414417383500 chip.bam2ta_ctl -878142932693808956 TAG-ALIGN 4680979414417383500->-878142932693808956 -878142932693808956->-8145453658778638381 -4100079119676705374 Filt/deduped BAM -4100079119676705374->4680979414417383500 -4100079119676705374->1850165348975321928 1209761022140872942 chip.bam2ta_ctl 2956188467917732152 TAG-ALIGN 1209761022140872942->2956188467917732152 2956188467917732152->-8145453658778638381 -7388499779157823633 Filt/deduped BAM -7388499779157823633->1209761022140872942 -7388499779157823633->1850165348975321928 -3132049855321371716 chip.bam2ta_ctl 1790781954122154602 TAG-ALIGN -3132049855321371716->1790781954122154602 1790781954122154602->-8145453658778638381 -7679101043683928490 Filt/deduped BAM -7679101043683928490->-3132049855321371716 -7679101043683928490->1850165348975321928 -3915199148076804915 chip.bam2ta_ctl 8531275483227721460 TAG-ALIGN -3915199148076804915->8531275483227721460 8531275483227721460->-8145453658778638381 5555992345230313662 Filt/deduped BAM 5555992345230313662->-3915199148076804915 5555992345230313662->1850165348975321928 -3979245487119272484 chip.bam2ta_ctl -3649774490896419280 TAG-ALIGN -3979245487119272484->-3649774490896419280 -3649774490896419280->-8145453658778638381 -3085628047998691518 Filt/deduped BAM -3085628047998691518->-3979245487119272484 -3085628047998691518->1850165348975321928 -5256474260943203885 chip.bam2ta_ctl 8334560560760480759 TAG-ALIGN -5256474260943203885->8334560560760480759 8334560560760480759->-8145453658778638381 6916417084216036351 Filt/deduped BAM 6916417084216036351->-5256474260943203885 6916417084216036351->1850165348975321928 6441563145680232805 chip.bam2ta_ctl -3075139141637453183 TAG-ALIGN 6441563145680232805->-3075139141637453183 -3075139141637453183->-8145453658778638381 3007142612584729454 Filt/deduped BAM 3007142612584729454->6441563145680232805 3007142612584729454->1850165348975321928 -3695980496596142368 chip.bam2ta_ctl -2804070260638586141 TAG-ALIGN -3695980496596142368->-2804070260638586141 -2804070260638586141->-8145453658778638381 -3453612968063151950 Filt/deduped BAM -3453612968063151950->-3695980496596142368 -3453612968063151950->1850165348975321928 4862424202156925442 chip.bam2ta_ctl -8495025416922964676 TAG-ALIGN 4862424202156925442->-8495025416922964676 -8495025416922964676->-8145453658778638381 -7108335182281222340 Filt/deduped BAM -7108335182281222340->4862424202156925442 -7108335182281222340->1850165348975321928 -3082668577482887035 chip.bam2ta_ctl -5384512656210247324 TAG-ALIGN -3082668577482887035->-5384512656210247324 -5384512656210247324->-8145453658778638381 7538035292754282408 Filt/deduped BAM 7538035292754282408->-3082668577482887035 7538035292754282408->1850165348975321928 -1236006734653896536 chip.bam2ta_ctl -3435485818425965995 TAG-ALIGN -1236006734653896536->-3435485818425965995 -3435485818425965995->-8145453658778638381 -3241544871011186461 Filt/deduped BAM -3241544871011186461->-1236006734653896536 -3241544871011186461->1850165348975321928 7975225752473474254 chip.bam2ta_ctl -6636376018421273084 TAG-ALIGN 7975225752473474254->-6636376018421273084 -6636376018421273084->-8145453658778638381 -46617194378671687 Filt/deduped BAM -46617194378671687->7975225752473474254 -46617194378671687->1850165348975321928 -3818933820981016703 chip.bam2ta_ctl -8146028400647283510 TAG-ALIGN -3818933820981016703->-8146028400647283510 -8146028400647283510->-8145453658778638381 -6063658014087012171 Filt/deduped BAM -6063658014087012171->-3818933820981016703 -6063658014087012171->1850165348975321928 -8893171811446779036 chip.bam2ta_ctl 6109783142785162791 TAG-ALIGN -8893171811446779036->6109783142785162791 6109783142785162791->-8145453658778638381 -1752136637419320996 Filt/deduped BAM -1752136637419320996->-8893171811446779036 -1752136637419320996->1850165348975321928 -5228577070251448638 chip.bam2ta_ctl -6604024806325804576 TAG-ALIGN -5228577070251448638->-6604024806325804576 -6604024806325804576->-8145453658778638381 -8101473920557808438 Filt/deduped BAM -8101473920557808438->-5228577070251448638 -8101473920557808438->1850165348975321928 894327253546100651 chip.bam2ta_ctl -280573289146103513 TAG-ALIGN 894327253546100651->-280573289146103513 -280573289146103513->-8145453658778638381 1098275283919332917 Filt/deduped BAM 1098275283919332917->894327253546100651 1098275283919332917->1850165348975321928 -9061782787298489161 chip.bam2ta_ctl -8811661684156634518 TAG-ALIGN -9061782787298489161->-8811661684156634518 -8811661684156634518->-8145453658778638381 6072679278618927159 Filt/deduped BAM 6072679278618927159->-9061782787298489161 6072679278618927159->1850165348975321928 -2828010909151558258 chip.bam2ta_ctl -263980794641926501 TAG-ALIGN -2828010909151558258->-263980794641926501 -263980794641926501->-8145453658778638381 -4701626152455891842 Filt/deduped BAM -4701626152455891842->-2828010909151558258 -4701626152455891842->1850165348975321928 2051499099139796002 chip.bam2ta_ctl -5724768192532560234 TAG-ALIGN 2051499099139796002->-5724768192532560234 -5724768192532560234->-8145453658778638381 7549997198903922508 Filt/deduped BAM 7549997198903922508->2051499099139796002 7549997198903922508->1850165348975321928 -1729512227467792824 chip.bam2ta_ctl 8169160862019421088 TAG-ALIGN -1729512227467792824->8169160862019421088 8169160862019421088->-8145453658778638381 -7163578878815736857 Filt/deduped BAM -7163578878815736857->-1729512227467792824 -7163578878815736857->1850165348975321928 7521087010806929105 chip.bam2ta_ctl 6687393403689077193 TAG-ALIGN 7521087010806929105->6687393403689077193 6687393403689077193->-8145453658778638381 2289222593103979956 Filt/deduped BAM 2289222593103979956->7521087010806929105 2289222593103979956->1850165348975321928 4316311830911025485 chip.bam2ta_ctl -5437706713349631178 TAG-ALIGN 4316311830911025485->-5437706713349631178 -5437706713349631178->-8145453658778638381 -6938849818553880974 Filt/deduped BAM -6938849818553880974->4316311830911025485 -6938849818553880974->1850165348975321928 -3696680445191866015 chip.bam2ta_ctl 6476996510648147943 TAG-ALIGN -3696680445191866015->6476996510648147943 6476996510648147943->-8145453658778638381 -3849575218060596992 Filt/deduped BAM -3849575218060596992->-3696680445191866015 -3849575218060596992->1850165348975321928 -6741759110332122559 chip.bam2ta_ctl -951206196078450367 TAG-ALIGN -6741759110332122559->-951206196078450367 -951206196078450367->-8145453658778638381 2860966982666873769 Filt/deduped BAM 2860966982666873769->-6741759110332122559 2860966982666873769->1850165348975321928 -3159040043358500325 IDR Plot ppr 8046697211039403972->-3159040043358500325 -3592564723251641949 IDR Peak ppr 8046697211039403972->-3592564723251641949 -3592564723251641949->3952207562274355902 1882481647836196441 IDR Plot rep1_vs_rep2 4409917335966443493->1882481647836196441 -2361893846072883729 IDR NPeak rep1_vs_rep2 4409917335966443493->-2361893846072883729 -2361893846072883729->3952207562274355902 6432938336266471893 Overlap Peak rep1_vs_rep2 -9178460901468176230->6432938336266471893 6432938336266471893->411924449081865005 -8477281606304041755 Overlap Peak optimal 411924449081865005->-8477281606304041755 2915080193069988299 Overlap reproducibility 411924449081865005->2915080193069988299 7658222743745701729 IDR Peak optimal 3952207562274355902->7658222743745701729 689171040927804217 IDR reproducibility 3952207562274355902->689171040927804217 3252581357219914425 Overlap Peak ppr 3305222404196838460->3252581357219914425 3252581357219914425->411924449081865005 7431012871580622919 JSD Plot 1850165348975321928->7431012871580622919

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/6ee65e00-2e71-4957-864a-fcb50698990e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.507M.pval.signal.bigwig?Expires=1601338297&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=WND2T8uPtQN1Q9GgZQtdEYV2o%2Bvwzu7xPRZyUWqRzIbUnkwpK7n%2BIiik7%2BMDplcrGSZS2%2FjSucG%2Fu7iVHwX54a4Wt03mqCgin4lcir37YJiINd7fBQ%2BEBxw46dyrWI0o%2BJBhkpkYzLg%2B9QdWAJCo71cJWYPJOAHDJ2VxYZ39MYgEANMBlMT2mKC4cQlfleECLuYVqf0VFRut%2FD2eiN0e7DSogXq4qgCVPqsWN%2Bk%2Felt75GzZOf2nGTqNlKqy5rpyg53KQM9mx%2BcEis3MNKLpqQy%2Bde3HNWamjjZZj87lLM%2BfHT7mSIkHV%2BZsl5JPOa%2FGBNCRAgAo1WS4npP5rTZ7%2FA%3D%3D"
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