File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF208FLC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF208FLC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF208FLC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF208FLC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF208FLC.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF176BPB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF176BPB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF176BPB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF176BPB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF176BPB.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.511M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.511M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.511M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF208FLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF208FLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF208FLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF208FLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.225M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF208FLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF208FLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF208FLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF208FLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.225M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF176BPB.crop_101-2bp.nodup.pr1_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF176BPB.crop_101-2bp.nodup.pr1_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF176BPB.crop_101-2bp.nodup.pr1_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF176BPB.crop_101-2bp.nodup.pr1_x_ctl.pooled.286M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF176BPB.crop_101-2bp.nodup.pr2_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF176BPB.crop_101-2bp.nodup.pr2_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF176BPB.crop_101-2bp.nodup.pr2_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF176BPB.crop_101-2bp.nodup.pr2_x_ctl.pooled.286M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.511M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF208FLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.225M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF208FLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.225M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF208FLC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF208FLC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF208FLC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF208FLC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF208FLC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF208FLC.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF176BPB.crop_101-2bp.nodup.pr1_x_ctl.pooled.286M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF176BPB.crop_101-2bp.nodup.pr2_x_ctl.pooled.286M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF176BPB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF176BPB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF176BPB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF176BPB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF176BPB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF176BPB.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF208FLC.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/dd3f8ef3-747b-4bf0-91d5-3ec9a5f34ed0/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.511M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.511M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF208FLC.crop_101-2bp.nodup_x_ctl.pooled.225M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2ddab298-76d2-400c-8b86-295b7265faa2/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF176BPB.crop_101-2bp.nodup_x_ctl.pooled.286M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -7904486241363832339 chip.macs2_signal_track_pooled -6112436578037032422 BW FC -7904486241363832339->-6112436578037032422 -9018923157879166678 BW p-val -7904486241363832339->-9018923157879166678 2003157690745475479 chip.call_peak_pooled -658920431188386526 Peak (bfilt) 2003157690745475479->-658920431188386526 743891419299987647 Peak 2003157690745475479->743891419299987647 3810226401036479091 chip.idr_ppr 743891419299987647->3810226401036479091 3738419475999437282 chip.idr 743891419299987647->3738419475999437282 1134637555036421969 chip.overlap 743891419299987647->1134637555036421969 2351801746740666885 chip.overlap_ppr 743891419299987647->2351801746740666885 9130732733298780625 chip.pool_ta 5546422553531241862 TAG-ALIGN 9130732733298780625->5546422553531241862 5546422553531241862->-7904486241363832339 5546422553531241862->2003157690745475479 5546422553531241862->3810226401036479091 5546422553531241862->3738419475999437282 5546422553531241862->1134637555036421969 5546422553531241862->2351801746740666885 4671332984973495547 chip.call_peak -5954674804226966896 Peak (bfilt) 4671332984973495547->-5954674804226966896 -8853750915966695267 Peak 4671332984973495547->-8853750915966695267 -8853750915966695267->3738419475999437282 -8853750915966695267->1134637555036421969 -6039032213276362869 chip.reproducibility_overlap -8853750915966695267->-6039032213276362869 531366178172325258 chip.reproducibility_idr -8853750915966695267->531366178172325258 -2914864935816718582 chip.bam2ta -6194424241745763988 TAG-ALIGN -2914864935816718582->-6194424241745763988 -6194424241745763988->9130732733298780625 -6194424241745763988->4671332984973495547 5723759542195322004 chip.macs2_signal_track -6194424241745763988->5723759542195322004 -6194424241745763988->3810226401036479091 -6194424241745763988->-6039032213276362869 -6194424241745763988->531366178172325258 -6194424241745763988->2351801746740666885 5525224775613884883 chip.filter -8497395672293317866 SAMstats QC 5525224775613884883->-8497395672293317866 9194383542722154248 Filt/deduped BAM 5525224775613884883->9194383542722154248 3734397373191683365 LibCmplx QC 5525224775613884883->3734397373191683365 9194383542722154248->-2914864935816718582 8064926973965880809 chip.jsd 9194383542722154248->8064926973965880809 -7680345255014854948 chip.align 5755003953262291578 SAMstats QC -7680345255014854948->5755003953262291578 7846950197814968188 BAM -7680345255014854948->7846950197814968188 7846950197814968188->5525224775613884883 6389861810601796848 chip.xcor -5918323279363776280 XCOR Plot 6389861810601796848->-5918323279363776280 -8992929616481017472 BW FC 5723759542195322004->-8992929616481017472 4229919580718497393 BW p-val 5723759542195322004->4229919580718497393 7797088995374420031 FASTQ R1 (1) 7797088995374420031->-7680345255014854948 7797088995374420031->6389861810601796848 -4780211230934661679 FASTQ R2 (1) -4780211230934661679->-7680345255014854948 7443244012407335894 chip.call_peak -5793595776137086169 Peak (bfilt) 7443244012407335894->-5793595776137086169 3278102068828180726 Peak 7443244012407335894->3278102068828180726 3278102068828180726->3738419475999437282 3278102068828180726->1134637555036421969 3278102068828180726->-6039032213276362869 3278102068828180726->531366178172325258 -8377726598480968710 chip.bam2ta -1896732187109905605 TAG-ALIGN -8377726598480968710->-1896732187109905605 -1896732187109905605->9130732733298780625 -1896732187109905605->7443244012407335894 -1407506894806723848 chip.macs2_signal_track -1896732187109905605->-1407506894806723848 -1896732187109905605->3810226401036479091 -1896732187109905605->-6039032213276362869 -1896732187109905605->531366178172325258 -1896732187109905605->2351801746740666885 -1547476775815783783 chip.filter -649827294053425010 SAMstats QC -1547476775815783783->-649827294053425010 5536353053776042194 Filt/deduped BAM -1547476775815783783->5536353053776042194 -9149624656419315439 LibCmplx QC -1547476775815783783->-9149624656419315439 5536353053776042194->-8377726598480968710 5536353053776042194->8064926973965880809 -7222976719095538888 chip.align -5616290978839533130 SAMstats QC -7222976719095538888->-5616290978839533130 6511368652375209567 BAM -7222976719095538888->6511368652375209567 6511368652375209567->-1547476775815783783 -3123939717787968756 chip.xcor 3423175819665518093 XCOR Plot -3123939717787968756->3423175819665518093 8828324609429789090 BW FC -1407506894806723848->8828324609429789090 8025357829152470907 BW p-val -1407506894806723848->8025357829152470907 -7236929173527301973 FASTQ R1 (1) -7236929173527301973->-7222976719095538888 -7236929173527301973->-3123939717787968756 1768680658546859584 FASTQ R2 (1) 1768680658546859584->-7222976719095538888 -5315245464588875005 chip.pool_ta_ctl -7949906358612696469 TAG-ALIGN -5315245464588875005->-7949906358612696469 -7949906358612696469->-7904486241363832339 -7949906358612696469->2003157690745475479 -7949906358612696469->4671332984973495547 -7949906358612696469->5723759542195322004 -7949906358612696469->7443244012407335894 -7949906358612696469->-1407506894806723848 -7949906358612696469->3810226401036479091 -7949906358612696469->-6039032213276362869 -7949906358612696469->531366178172325258 -7949906358612696469->2351801746740666885 -4726634534212924649 chip.bam2ta_ctl 5169817061287953481 TAG-ALIGN -4726634534212924649->5169817061287953481 5169817061287953481->-5315245464588875005 -2997496111490662545 Filt/deduped BAM -2997496111490662545->-4726634534212924649 -2997496111490662545->8064926973965880809 6187992729507066166 chip.bam2ta_ctl 8994724934281127265 TAG-ALIGN 6187992729507066166->8994724934281127265 8994724934281127265->-5315245464588875005 8810918594128026153 Filt/deduped BAM 8810918594128026153->6187992729507066166 8810918594128026153->8064926973965880809 -5672852179021339641 chip.bam2ta_ctl 2159879130477040196 TAG-ALIGN -5672852179021339641->2159879130477040196 2159879130477040196->-5315245464588875005 726334577898120514 Filt/deduped BAM 726334577898120514->-5672852179021339641 726334577898120514->8064926973965880809 -5644826236598953849 chip.bam2ta_ctl 6480633524748937565 TAG-ALIGN -5644826236598953849->6480633524748937565 6480633524748937565->-5315245464588875005 -5069104976715092006 Filt/deduped BAM -5069104976715092006->-5644826236598953849 -5069104976715092006->8064926973965880809 8529312111096969631 chip.bam2ta_ctl -7554873223360667555 TAG-ALIGN 8529312111096969631->-7554873223360667555 -7554873223360667555->-5315245464588875005 7368295064516791655 Filt/deduped BAM 7368295064516791655->8529312111096969631 7368295064516791655->8064926973965880809 8182789633376960770 chip.bam2ta_ctl 6790333305887688834 TAG-ALIGN 8182789633376960770->6790333305887688834 6790333305887688834->-5315245464588875005 3206964158655348128 Filt/deduped BAM 3206964158655348128->8182789633376960770 3206964158655348128->8064926973965880809 -8408920938008842271 chip.bam2ta_ctl -6321333220240272935 TAG-ALIGN -8408920938008842271->-6321333220240272935 -6321333220240272935->-5315245464588875005 3506184698848800959 Filt/deduped BAM 3506184698848800959->-8408920938008842271 3506184698848800959->8064926973965880809 453148101586142537 chip.bam2ta_ctl -3736982977824105341 TAG-ALIGN 453148101586142537->-3736982977824105341 -3736982977824105341->-5315245464588875005 -5045570540158227690 Filt/deduped BAM -5045570540158227690->453148101586142537 -5045570540158227690->8064926973965880809 594696996324852210 chip.bam2ta_ctl -5032130706515931814 TAG-ALIGN 594696996324852210->-5032130706515931814 -5032130706515931814->-5315245464588875005 7977358351370595383 Filt/deduped BAM 7977358351370595383->594696996324852210 7977358351370595383->8064926973965880809 5189050415450827498 chip.bam2ta_ctl 4696377833620112391 TAG-ALIGN 5189050415450827498->4696377833620112391 4696377833620112391->-5315245464588875005 8084149237158707163 Filt/deduped BAM 8084149237158707163->5189050415450827498 8084149237158707163->8064926973965880809 2987432036535652509 chip.bam2ta_ctl -3770030716167991846 TAG-ALIGN 2987432036535652509->-3770030716167991846 -3770030716167991846->-5315245464588875005 -6738365666313487474 Filt/deduped BAM -6738365666313487474->2987432036535652509 -6738365666313487474->8064926973965880809 689235821430025332 chip.bam2ta_ctl -5376158122942143472 TAG-ALIGN 689235821430025332->-5376158122942143472 -5376158122942143472->-5315245464588875005 -8021548174907451358 Filt/deduped BAM -8021548174907451358->689235821430025332 -8021548174907451358->8064926973965880809 -8315452750133421420 chip.bam2ta_ctl 7627377909683091326 TAG-ALIGN -8315452750133421420->7627377909683091326 7627377909683091326->-5315245464588875005 -1869008589160482603 Filt/deduped BAM -1869008589160482603->-8315452750133421420 -1869008589160482603->8064926973965880809 -579483177566896587 chip.bam2ta_ctl -4276525586977207722 TAG-ALIGN -579483177566896587->-4276525586977207722 -4276525586977207722->-5315245464588875005 5625732620337221563 Filt/deduped BAM 5625732620337221563->-579483177566896587 5625732620337221563->8064926973965880809 5006020971948854205 chip.bam2ta_ctl 4723981366466612994 TAG-ALIGN 5006020971948854205->4723981366466612994 4723981366466612994->-5315245464588875005 -3877520877778514494 Filt/deduped BAM -3877520877778514494->5006020971948854205 -3877520877778514494->8064926973965880809 1152418676031420406 chip.bam2ta_ctl -5109282257390665139 TAG-ALIGN 1152418676031420406->-5109282257390665139 -5109282257390665139->-5315245464588875005 3978399970008084699 Filt/deduped BAM 3978399970008084699->1152418676031420406 3978399970008084699->8064926973965880809 8898984696272619412 chip.bam2ta_ctl -5724253348243396979 TAG-ALIGN 8898984696272619412->-5724253348243396979 -5724253348243396979->-5315245464588875005 -6845771982118850772 Filt/deduped BAM -6845771982118850772->8898984696272619412 -6845771982118850772->8064926973965880809 2776536012394388179 chip.bam2ta_ctl 4684601069332028536 TAG-ALIGN 2776536012394388179->4684601069332028536 4684601069332028536->-5315245464588875005 4968731836158364015 Filt/deduped BAM 4968731836158364015->2776536012394388179 4968731836158364015->8064926973965880809 7827535639649339943 chip.bam2ta_ctl -5701627158951030950 TAG-ALIGN 7827535639649339943->-5701627158951030950 -5701627158951030950->-5315245464588875005 5434727425304999736 Filt/deduped BAM 5434727425304999736->7827535639649339943 5434727425304999736->8064926973965880809 -6393129695764017453 chip.bam2ta_ctl -7134877236008045243 TAG-ALIGN -6393129695764017453->-7134877236008045243 -7134877236008045243->-5315245464588875005 -1237023415643017834 Filt/deduped BAM -1237023415643017834->-6393129695764017453 -1237023415643017834->8064926973965880809 -509902567033259159 chip.bam2ta_ctl 5588406670241625678 TAG-ALIGN -509902567033259159->5588406670241625678 5588406670241625678->-5315245464588875005 1611314748271379788 Filt/deduped BAM 1611314748271379788->-509902567033259159 1611314748271379788->8064926973965880809 2912694267389511460 chip.bam2ta_ctl -2984804078329396304 TAG-ALIGN 2912694267389511460->-2984804078329396304 -2984804078329396304->-5315245464588875005 3836343379317358176 Filt/deduped BAM 3836343379317358176->2912694267389511460 3836343379317358176->8064926973965880809 5829222519377029683 chip.bam2ta_ctl -4367594292767813796 TAG-ALIGN 5829222519377029683->-4367594292767813796 -4367594292767813796->-5315245464588875005 8206178008026184170 Filt/deduped BAM 8206178008026184170->5829222519377029683 8206178008026184170->8064926973965880809 -7510101040335929352 chip.bam2ta_ctl -3386548511399841114 TAG-ALIGN -7510101040335929352->-3386548511399841114 -3386548511399841114->-5315245464588875005 7653286175055974768 Filt/deduped BAM 7653286175055974768->-7510101040335929352 7653286175055974768->8064926973965880809 -6769312058901768343 IDR Plot ppr 3810226401036479091->-6769312058901768343 -4114356754441219497 IDR Peak ppr 3810226401036479091->-4114356754441219497 -4114356754441219497->531366178172325258 7613496311493106400 IDR Plot rep1_vs_rep2 3738419475999437282->7613496311493106400 814380626751019022 IDR NPeak rep1_vs_rep2 3738419475999437282->814380626751019022 814380626751019022->531366178172325258 2846897440710168299 Overlap Peak rep1_vs_rep2 1134637555036421969->2846897440710168299 2846897440710168299->-6039032213276362869 -8080422329430097920 Overlap Peak optimal -6039032213276362869->-8080422329430097920 -8545038928717311165 Overlap reproducibility -6039032213276362869->-8545038928717311165 -7645972494522189116 IDR Peak optimal 531366178172325258->-7645972494522189116 -5514416762940460842 IDR reproducibility 531366178172325258->-5514416762940460842 743774806792196725 Overlap Peak ppr 2351801746740666885->743774806792196725 743774806792196725->-6039032213276362869 4950581494138644755 JSD Plot 8064926973965880809->4950581494138644755

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