File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF333HZB.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF333HZB.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF333HZB.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF333HZB.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF333HZB.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF911HHR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF911HHR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF911HHR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF911HHR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF911HHR.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.555M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.555M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.555M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.555M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF333HZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF333HZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF333HZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF333HZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF333HZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF333HZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF333HZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF333HZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF911HHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF911HHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF911HHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF911HHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF911HHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF911HHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF911HHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF911HHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.555M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.555M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.555M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF333HZB.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF333HZB.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF333HZB.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF333HZB.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF333HZB.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF333HZB.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF333HZB.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF333HZB.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF911HHR.crop_101-2bp.nodup.pr1_x_ctl.pooled.239M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF911HHR.crop_101-2bp.nodup.pr2_x_ctl.pooled.239M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF911HHR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF911HHR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF911HHR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF911HHR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF911HHR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/165d9743-ad56-4156-b273-ad289e5782c4/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF911HHR.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF333HZB.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.555M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.555M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF333HZB.crop_101-2bp.nodup_x_ctl.pooled.316M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/38d0eb14-5f12-4529-92dc-3796caca8734/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF911HHR.crop_101-2bp.nodup_x_ctl.pooled.239M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3627140138040506176 chip.macs2_signal_track_pooled 6515565941470145050 BW FC 3627140138040506176->6515565941470145050 -8315754298656285511 BW p-val 3627140138040506176->-8315754298656285511 1413274186725658450 chip.call_peak_pooled 2005079555476714832 Peak (bfilt) 1413274186725658450->2005079555476714832 873434103620118291 Peak 1413274186725658450->873434103620118291 6581613579302017411 chip.idr_ppr 873434103620118291->6581613579302017411 -3018020147339231553 chip.idr 873434103620118291->-3018020147339231553 -1725622409532569974 chip.overlap 873434103620118291->-1725622409532569974 -5152291351509318115 chip.overlap_ppr 873434103620118291->-5152291351509318115 -4430683807101180556 chip.pool_ta -1672420562985825609 TAG-ALIGN -4430683807101180556->-1672420562985825609 -1672420562985825609->3627140138040506176 -1672420562985825609->1413274186725658450 -1672420562985825609->6581613579302017411 -1672420562985825609->-3018020147339231553 -1672420562985825609->-1725622409532569974 -1672420562985825609->-5152291351509318115 -2645321430847543352 chip.call_peak -2266728365051669178 Peak (bfilt) -2645321430847543352->-2266728365051669178 -8930796996427307867 Peak -2645321430847543352->-8930796996427307867 -8930796996427307867->-3018020147339231553 -8930796996427307867->-1725622409532569974 -7653275870195094730 chip.reproducibility_overlap -8930796996427307867->-7653275870195094730 786552904506632957 chip.reproducibility_idr -8930796996427307867->786552904506632957 -857666722589715925 chip.bam2ta 3485510789928018592 TAG-ALIGN -857666722589715925->3485510789928018592 3485510789928018592->-4430683807101180556 3485510789928018592->-2645321430847543352 3732256622921055218 chip.macs2_signal_track 3485510789928018592->3732256622921055218 3485510789928018592->6581613579302017411 3485510789928018592->-7653275870195094730 3485510789928018592->786552904506632957 3485510789928018592->-5152291351509318115 7793605072591364177 chip.filter -9198854975387307254 SAMstats QC 7793605072591364177->-9198854975387307254 1384172244100372352 Filt/deduped BAM 7793605072591364177->1384172244100372352 104812370445210272 LibCmplx QC 7793605072591364177->104812370445210272 1384172244100372352->-857666722589715925 25766039122894128 chip.jsd 1384172244100372352->25766039122894128 8028283999240920634 chip.align -853813164464311873 SAMstats QC 8028283999240920634->-853813164464311873 1881907497149126144 BAM 8028283999240920634->1881907497149126144 1881907497149126144->7793605072591364177 -7578454964990904627 chip.xcor -7267407298913763039 XCOR Plot -7578454964990904627->-7267407298913763039 -2195438481603018233 BW FC 3732256622921055218->-2195438481603018233 6065537342256393391 BW p-val 3732256622921055218->6065537342256393391 1953609045920747102 FASTQ R1 (1) 1953609045920747102->8028283999240920634 1953609045920747102->-7578454964990904627 2008725232083516840 FASTQ R2 (1) 2008725232083516840->8028283999240920634 -1020384702893965624 chip.call_peak -8211200479139025110 Peak (bfilt) -1020384702893965624->-8211200479139025110 70830458285287270 Peak -1020384702893965624->70830458285287270 70830458285287270->-3018020147339231553 70830458285287270->-1725622409532569974 70830458285287270->-7653275870195094730 70830458285287270->786552904506632957 -445032564528554107 chip.bam2ta -2156166288250814941 TAG-ALIGN -445032564528554107->-2156166288250814941 -2156166288250814941->-4430683807101180556 -2156166288250814941->-1020384702893965624 -8839060220727847265 chip.macs2_signal_track -2156166288250814941->-8839060220727847265 -2156166288250814941->6581613579302017411 -2156166288250814941->-7653275870195094730 -2156166288250814941->786552904506632957 -2156166288250814941->-5152291351509318115 6487304654088278713 chip.filter 6860114151764665976 SAMstats QC 6487304654088278713->6860114151764665976 110731478710984924 Filt/deduped BAM 6487304654088278713->110731478710984924 -7955420167111368161 LibCmplx QC 6487304654088278713->-7955420167111368161 110731478710984924->-445032564528554107 110731478710984924->25766039122894128 -321202305215549777 chip.align -3219698167663706555 SAMstats QC -321202305215549777->-3219698167663706555 -8600223720650551149 BAM -321202305215549777->-8600223720650551149 -8600223720650551149->6487304654088278713 -7272132663425843441 chip.xcor 2413179754773386006 XCOR Plot -7272132663425843441->2413179754773386006 -5407557452939149672 BW FC -8839060220727847265->-5407557452939149672 -7130776221317711319 BW p-val -8839060220727847265->-7130776221317711319 8488047719319172118 FASTQ R1 (1) 8488047719319172118->-321202305215549777 8488047719319172118->-7272132663425843441 2066448628739977539 FASTQ R2 (1) 2066448628739977539->-321202305215549777 -1320751352057889752 chip.pool_ta_ctl 7304306827076926746 TAG-ALIGN -1320751352057889752->7304306827076926746 7304306827076926746->3627140138040506176 7304306827076926746->1413274186725658450 7304306827076926746->-2645321430847543352 7304306827076926746->3732256622921055218 7304306827076926746->-1020384702893965624 7304306827076926746->-8839060220727847265 7304306827076926746->6581613579302017411 7304306827076926746->-7653275870195094730 7304306827076926746->786552904506632957 7304306827076926746->-5152291351509318115 3090691268300867286 chip.bam2ta_ctl 5897787192128967428 TAG-ALIGN 3090691268300867286->5897787192128967428 5897787192128967428->-1320751352057889752 -8789633558928913011 Filt/deduped BAM -8789633558928913011->3090691268300867286 -8789633558928913011->25766039122894128 -3377521542702517023 chip.bam2ta_ctl 325669008645616262 TAG-ALIGN -3377521542702517023->325669008645616262 325669008645616262->-1320751352057889752 -1699774794725356877 Filt/deduped BAM -1699774794725356877->-3377521542702517023 -1699774794725356877->25766039122894128 1682341151374118732 chip.bam2ta_ctl -8974466708590078458 TAG-ALIGN 1682341151374118732->-8974466708590078458 -8974466708590078458->-1320751352057889752 -995548376610945481 Filt/deduped BAM -995548376610945481->1682341151374118732 -995548376610945481->25766039122894128 1138630840545838319 chip.bam2ta_ctl 2428368387667420258 TAG-ALIGN 1138630840545838319->2428368387667420258 2428368387667420258->-1320751352057889752 5485816677095900367 Filt/deduped BAM 5485816677095900367->1138630840545838319 5485816677095900367->25766039122894128 -5338331356746151699 chip.bam2ta_ctl -5723530698826583311 TAG-ALIGN -5338331356746151699->-5723530698826583311 -5723530698826583311->-1320751352057889752 3098074963591063973 Filt/deduped BAM 3098074963591063973->-5338331356746151699 3098074963591063973->25766039122894128 8842669418317214654 chip.bam2ta_ctl 6390229765769020361 TAG-ALIGN 8842669418317214654->6390229765769020361 6390229765769020361->-1320751352057889752 6956897451782832961 Filt/deduped BAM 6956897451782832961->8842669418317214654 6956897451782832961->25766039122894128 -3877443098799925031 chip.bam2ta_ctl 3666579471417155709 TAG-ALIGN -3877443098799925031->3666579471417155709 3666579471417155709->-1320751352057889752 -8895117528738990237 Filt/deduped BAM -8895117528738990237->-3877443098799925031 -8895117528738990237->25766039122894128 5378011831164537363 chip.bam2ta_ctl -6240856729449644067 TAG-ALIGN 5378011831164537363->-6240856729449644067 -6240856729449644067->-1320751352057889752 -3402633080826749166 Filt/deduped BAM -3402633080826749166->5378011831164537363 -3402633080826749166->25766039122894128 -1756970000113827041 chip.bam2ta_ctl 7643774264080106949 TAG-ALIGN -1756970000113827041->7643774264080106949 7643774264080106949->-1320751352057889752 -7242609343476107297 Filt/deduped BAM -7242609343476107297->-1756970000113827041 -7242609343476107297->25766039122894128 3146246749411597922 chip.bam2ta_ctl -8101022550292575855 TAG-ALIGN 3146246749411597922->-8101022550292575855 -8101022550292575855->-1320751352057889752 -6772025416185491527 Filt/deduped BAM -6772025416185491527->3146246749411597922 -6772025416185491527->25766039122894128 106257146992418869 chip.bam2ta_ctl 5473327739122516550 TAG-ALIGN 106257146992418869->5473327739122516550 5473327739122516550->-1320751352057889752 5519791154852025190 Filt/deduped BAM 5519791154852025190->106257146992418869 5519791154852025190->25766039122894128 -4643120197314269678 chip.bam2ta_ctl -30320349408895092 TAG-ALIGN -4643120197314269678->-30320349408895092 -30320349408895092->-1320751352057889752 2318342943420623108 Filt/deduped BAM 2318342943420623108->-4643120197314269678 2318342943420623108->25766039122894128 -2727313682372562833 chip.bam2ta_ctl 4786681098011194868 TAG-ALIGN -2727313682372562833->4786681098011194868 4786681098011194868->-1320751352057889752 -473957258043270360 Filt/deduped BAM -473957258043270360->-2727313682372562833 -473957258043270360->25766039122894128 2107027081175991709 chip.bam2ta_ctl 2133110506245564218 TAG-ALIGN 2107027081175991709->2133110506245564218 2133110506245564218->-1320751352057889752 -8744810091528559545 Filt/deduped BAM -8744810091528559545->2107027081175991709 -8744810091528559545->25766039122894128 -4331057720671299035 chip.bam2ta_ctl 4952229860816619322 TAG-ALIGN -4331057720671299035->4952229860816619322 4952229860816619322->-1320751352057889752 7831646809576098518 Filt/deduped BAM 7831646809576098518->-4331057720671299035 7831646809576098518->25766039122894128 -5677396950525771935 chip.bam2ta_ctl 4459492533211451358 TAG-ALIGN -5677396950525771935->4459492533211451358 4459492533211451358->-1320751352057889752 -3256910401680144983 Filt/deduped BAM -3256910401680144983->-5677396950525771935 -3256910401680144983->25766039122894128 1457847344111707855 chip.bam2ta_ctl -8451963846840190295 TAG-ALIGN 1457847344111707855->-8451963846840190295 -8451963846840190295->-1320751352057889752 3139678597038737627 Filt/deduped BAM 3139678597038737627->1457847344111707855 3139678597038737627->25766039122894128 126676966830201206 chip.bam2ta_ctl 8589051654364063987 TAG-ALIGN 126676966830201206->8589051654364063987 8589051654364063987->-1320751352057889752 5996628897277493471 Filt/deduped BAM 5996628897277493471->126676966830201206 5996628897277493471->25766039122894128 -4617457774603459640 chip.bam2ta_ctl -1220160069752641005 TAG-ALIGN -4617457774603459640->-1220160069752641005 -1220160069752641005->-1320751352057889752 5620953672592701524 Filt/deduped BAM 5620953672592701524->-4617457774603459640 5620953672592701524->25766039122894128 -2387249616492094861 chip.bam2ta_ctl -5464953247143951996 TAG-ALIGN -2387249616492094861->-5464953247143951996 -5464953247143951996->-1320751352057889752 230690248664052653 Filt/deduped BAM 230690248664052653->-2387249616492094861 230690248664052653->25766039122894128 -3376916645494071213 chip.bam2ta_ctl 5117912135219257613 TAG-ALIGN -3376916645494071213->5117912135219257613 5117912135219257613->-1320751352057889752 -2672155957447199521 Filt/deduped BAM -2672155957447199521->-3376916645494071213 -2672155957447199521->25766039122894128 -486943760415988440 chip.bam2ta_ctl -6466942500355896283 TAG-ALIGN -486943760415988440->-6466942500355896283 -6466942500355896283->-1320751352057889752 8921398241000208655 Filt/deduped BAM 8921398241000208655->-486943760415988440 8921398241000208655->25766039122894128 -2016546767648656795 chip.bam2ta_ctl 8881014223312117979 TAG-ALIGN -2016546767648656795->8881014223312117979 8881014223312117979->-1320751352057889752 -339080141583723271 Filt/deduped BAM -339080141583723271->-2016546767648656795 -339080141583723271->25766039122894128 4787394236705287923 chip.bam2ta_ctl -8157498593069524938 TAG-ALIGN 4787394236705287923->-8157498593069524938 -8157498593069524938->-1320751352057889752 -8551889175894021725 Filt/deduped BAM -8551889175894021725->4787394236705287923 -8551889175894021725->25766039122894128 -1728102472268720818 IDR Plot ppr 6581613579302017411->-1728102472268720818 2649440337908687622 IDR Peak ppr 6581613579302017411->2649440337908687622 2649440337908687622->786552904506632957 -1402374954585711583 IDR Plot rep1_vs_rep2 -3018020147339231553->-1402374954585711583 628115170830550510 IDR NPeak rep1_vs_rep2 -3018020147339231553->628115170830550510 628115170830550510->786552904506632957 -485056531813911346 Overlap Peak rep1_vs_rep2 -1725622409532569974->-485056531813911346 -485056531813911346->-7653275870195094730 7653509511353926487 Overlap Peak optimal -7653275870195094730->7653509511353926487 -4979288040916803389 Overlap reproducibility -7653275870195094730->-4979288040916803389 -2736795464133303905 IDR Peak optimal 786552904506632957->-2736795464133303905 8946991704465340747 IDR reproducibility 786552904506632957->8946991704465340747 7651081611984736427 Overlap Peak ppr -5152291351509318115->7651081611984736427 7651081611984736427->-7653275870195094730 2797304472715720863 JSD Plot 25766039122894128->2797304472715720863

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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