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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF755CGW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF755CGW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF755CGW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF755CGW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF755CGW.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF726QBO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF726QBO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF726QBO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF726QBO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF726QBO.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.592M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.592M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.592M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.592M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF755CGW.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF755CGW.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF755CGW.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF755CGW.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF755CGW.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF755CGW.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF755CGW.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF755CGW.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF726QBO.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF726QBO.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF726QBO.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF726QBO.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF726QBO.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF726QBO.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF726QBO.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF726QBO.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.592M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.592M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.592M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF755CGW.crop_101-2bp.nodup.pr1_x_ctl.pooled.316M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF755CGW.crop_101-2bp.nodup.pr2_x_ctl.pooled.316M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF755CGW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF755CGW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF755CGW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF755CGW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF755CGW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF755CGW.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF726QBO.crop_101-2bp.nodup.pr1_x_ctl.pooled.276M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF726QBO.crop_101-2bp.nodup.pr2_x_ctl.pooled.276M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF726QBO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF726QBO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF726QBO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF726QBO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF726QBO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF726QBO.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF755CGW.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.592M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.592M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF755CGW.crop_101-2bp.nodup_x_ctl.pooled.316M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8f355845-afac-4807-a9da-1e2be4c498df/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF726QBO.crop_101-2bp.nodup_x_ctl.pooled.276M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -4486151918717408881 chip.macs2_signal_track_pooled 6557599070922860017 BW FC -4486151918717408881->6557599070922860017 -3477900603695030135 BW p-val -4486151918717408881->-3477900603695030135 -1623508641971397766 chip.call_peak_pooled -3637247261652938592 Peak (bfilt) -1623508641971397766->-3637247261652938592 7014803744480846003 Peak -1623508641971397766->7014803744480846003 -7944137718163661881 chip.idr_ppr 7014803744480846003->-7944137718163661881 -7045677652214141690 chip.idr 7014803744480846003->-7045677652214141690 1984547702402206683 chip.overlap 7014803744480846003->1984547702402206683 -5854130170700135530 chip.overlap_ppr 7014803744480846003->-5854130170700135530 5396346220958135383 chip.pool_ta -4266258796137942428 TAG-ALIGN 5396346220958135383->-4266258796137942428 -4266258796137942428->-4486151918717408881 -4266258796137942428->-1623508641971397766 -4266258796137942428->-7944137718163661881 -4266258796137942428->-7045677652214141690 -4266258796137942428->1984547702402206683 -4266258796137942428->-5854130170700135530 -3068569638192652237 chip.call_peak 5199314351519998640 Peak (bfilt) -3068569638192652237->5199314351519998640 -496681020606959531 Peak -3068569638192652237->-496681020606959531 -496681020606959531->-7045677652214141690 -496681020606959531->1984547702402206683 669228673355339665 chip.reproducibility_overlap -496681020606959531->669228673355339665 6995491197779409285 chip.reproducibility_idr -496681020606959531->6995491197779409285 8928497876831297601 chip.bam2ta 8285297496288573143 TAG-ALIGN 8928497876831297601->8285297496288573143 8285297496288573143->5396346220958135383 8285297496288573143->-3068569638192652237 4175565329114604346 chip.macs2_signal_track 8285297496288573143->4175565329114604346 8285297496288573143->-7944137718163661881 8285297496288573143->669228673355339665 8285297496288573143->6995491197779409285 8285297496288573143->-5854130170700135530 -6142081458625557821 chip.filter 3098031776740488574 SAMstats QC -6142081458625557821->3098031776740488574 -320859971273081998 Filt/deduped BAM -6142081458625557821->-320859971273081998 -3246549296112377271 LibCmplx QC -6142081458625557821->-3246549296112377271 -320859971273081998->8928497876831297601 -8140889805433520607 chip.jsd -320859971273081998->-8140889805433520607 -7288516283157858922 chip.jsd -320859971273081998->-7288516283157858922 -7994207591008278548 chip.align 6296534328840899444 SAMstats QC -7994207591008278548->6296534328840899444 -8520979410326614462 BAM -7994207591008278548->-8520979410326614462 -8520979410326614462->-6142081458625557821 7874242973054322459 chip.xcor -4006192379696784749 XCOR Plot 7874242973054322459->-4006192379696784749 -3312397851660399829 BW FC 4175565329114604346->-3312397851660399829 8148255611677536759 BW p-val 4175565329114604346->8148255611677536759 -4962599072380283509 FASTQ R1 (1) -4962599072380283509->-7994207591008278548 -4962599072380283509->7874242973054322459 -7692262018262893208 FASTQ R2 (1) -7692262018262893208->-7994207591008278548 1519639000838607926 chip.call_peak 5343000157277558864 Peak (bfilt) 1519639000838607926->5343000157277558864 3384789327125582764 Peak 1519639000838607926->3384789327125582764 3384789327125582764->-7045677652214141690 3384789327125582764->1984547702402206683 3384789327125582764->669228673355339665 3384789327125582764->6995491197779409285 -5842081636794508780 chip.bam2ta 6199618937082972939 TAG-ALIGN -5842081636794508780->6199618937082972939 6199618937082972939->5396346220958135383 6199618937082972939->1519639000838607926 2169242978790070970 chip.macs2_signal_track 6199618937082972939->2169242978790070970 6199618937082972939->-7944137718163661881 6199618937082972939->669228673355339665 6199618937082972939->6995491197779409285 6199618937082972939->-5854130170700135530 -7108377339573359215 chip.filter -9159273931048380080 SAMstats QC -7108377339573359215->-9159273931048380080 9164853086080393060 Filt/deduped BAM -7108377339573359215->9164853086080393060 -8317115892058432043 LibCmplx QC -7108377339573359215->-8317115892058432043 9164853086080393060->-5842081636794508780 9164853086080393060->-8140889805433520607 9164853086080393060->-7288516283157858922 -5362006193089313148 chip.align -2140044231212010307 SAMstats QC -5362006193089313148->-2140044231212010307 -9007337541976303619 BAM -5362006193089313148->-9007337541976303619 -9007337541976303619->-7108377339573359215 7598200923786012411 chip.xcor -8977386372427437416 XCOR Plot 7598200923786012411->-8977386372427437416 8910966251891715720 BW FC 2169242978790070970->8910966251891715720 -4774647237468456129 BW p-val 2169242978790070970->-4774647237468456129 506970574811228784 FASTQ R1 (1) 506970574811228784->-5362006193089313148 506970574811228784->7598200923786012411 -5594364025075672976 FASTQ R2 (1) -5594364025075672976->-5362006193089313148 -3824267305412785550 chip.pool_ta_ctl -1225043403682074894 TAG-ALIGN -3824267305412785550->-1225043403682074894 -1225043403682074894->-4486151918717408881 -1225043403682074894->-1623508641971397766 -1225043403682074894->-3068569638192652237 -1225043403682074894->4175565329114604346 -1225043403682074894->1519639000838607926 -1225043403682074894->2169242978790070970 -1225043403682074894->-7944137718163661881 -1225043403682074894->669228673355339665 -1225043403682074894->6995491197779409285 -1225043403682074894->-5854130170700135530 1773873448388614637 chip.bam2ta_ctl 7239687553372258306 TAG-ALIGN 1773873448388614637->7239687553372258306 7239687553372258306->-3824267305412785550 457395141694624219 Filt/deduped BAM 457395141694624219->1773873448388614637 457395141694624219->-8140889805433520607 457395141694624219->-7288516283157858922 -6652382727150172680 chip.bam2ta_ctl 3969500381115585167 TAG-ALIGN -6652382727150172680->3969500381115585167 3969500381115585167->-3824267305412785550 5142822404155166878 Filt/deduped BAM 5142822404155166878->-6652382727150172680 5142822404155166878->-8140889805433520607 5142822404155166878->-7288516283157858922 -3225968102292874729 chip.bam2ta_ctl -1659538323063068125 TAG-ALIGN -3225968102292874729->-1659538323063068125 -1659538323063068125->-3824267305412785550 2473410520332286840 Filt/deduped BAM 2473410520332286840->-3225968102292874729 2473410520332286840->-8140889805433520607 2473410520332286840->-7288516283157858922 -1711973310999895414 chip.bam2ta_ctl -4548542909890423284 TAG-ALIGN -1711973310999895414->-4548542909890423284 -4548542909890423284->-3824267305412785550 2367712736658240751 Filt/deduped BAM 2367712736658240751->-1711973310999895414 2367712736658240751->-8140889805433520607 2367712736658240751->-7288516283157858922 -4419998618069066652 chip.bam2ta_ctl -1682182144519033775 TAG-ALIGN -4419998618069066652->-1682182144519033775 -1682182144519033775->-3824267305412785550 1165182206845533143 Filt/deduped BAM 1165182206845533143->-4419998618069066652 1165182206845533143->-8140889805433520607 1165182206845533143->-7288516283157858922 -6215499800919960059 chip.bam2ta_ctl 9057270041317458256 TAG-ALIGN -6215499800919960059->9057270041317458256 9057270041317458256->-3824267305412785550 4641880582792158910 Filt/deduped BAM 4641880582792158910->-6215499800919960059 4641880582792158910->-8140889805433520607 4641880582792158910->-7288516283157858922 -3344070117323224665 chip.bam2ta_ctl -6827704941562123286 TAG-ALIGN -3344070117323224665->-6827704941562123286 -6827704941562123286->-3824267305412785550 6167592390441345815 Filt/deduped BAM 6167592390441345815->-3344070117323224665 6167592390441345815->-8140889805433520607 6167592390441345815->-7288516283157858922 2937860815547098451 chip.bam2ta_ctl 4387477523711623753 TAG-ALIGN 2937860815547098451->4387477523711623753 4387477523711623753->-3824267305412785550 -8574237895717880023 Filt/deduped BAM -8574237895717880023->2937860815547098451 -8574237895717880023->-8140889805433520607 -8574237895717880023->-7288516283157858922 4992155602460334307 chip.bam2ta_ctl -3435576331036207270 TAG-ALIGN 4992155602460334307->-3435576331036207270 -3435576331036207270->-3824267305412785550 7594723874503318125 Filt/deduped BAM 7594723874503318125->4992155602460334307 7594723874503318125->-8140889805433520607 7594723874503318125->-7288516283157858922 4806918930975184320 chip.bam2ta_ctl -2113800228022023774 TAG-ALIGN 4806918930975184320->-2113800228022023774 -2113800228022023774->-3824267305412785550 -4862645702545430455 Filt/deduped BAM -4862645702545430455->4806918930975184320 -4862645702545430455->-8140889805433520607 -4862645702545430455->-7288516283157858922 6334352233969093353 chip.bam2ta_ctl -5699539532290688549 TAG-ALIGN 6334352233969093353->-5699539532290688549 -5699539532290688549->-3824267305412785550 -5581221386078433310 Filt/deduped BAM -5581221386078433310->6334352233969093353 -5581221386078433310->-8140889805433520607 -5581221386078433310->-7288516283157858922 3714529741090937879 chip.bam2ta_ctl -5563512093316315133 TAG-ALIGN 3714529741090937879->-5563512093316315133 -5563512093316315133->-3824267305412785550 -77920845016259361 Filt/deduped BAM -77920845016259361->3714529741090937879 -77920845016259361->-8140889805433520607 -77920845016259361->-7288516283157858922 1631393308797270857 chip.bam2ta_ctl -2308949885251439641 TAG-ALIGN 1631393308797270857->-2308949885251439641 -2308949885251439641->-3824267305412785550 -9032395208878895692 Filt/deduped BAM -9032395208878895692->1631393308797270857 -9032395208878895692->-8140889805433520607 -9032395208878895692->-7288516283157858922 5130950076724517916 chip.bam2ta_ctl 7365760225532020682 TAG-ALIGN 5130950076724517916->7365760225532020682 7365760225532020682->-3824267305412785550 -1620198511369696791 Filt/deduped BAM -1620198511369696791->5130950076724517916 -1620198511369696791->-8140889805433520607 -1620198511369696791->-7288516283157858922 6494800086857451027 chip.bam2ta_ctl 7404064408716845567 TAG-ALIGN 6494800086857451027->7404064408716845567 7404064408716845567->-3824267305412785550 -2666671781225441660 Filt/deduped BAM -2666671781225441660->6494800086857451027 -2666671781225441660->-8140889805433520607 -2666671781225441660->-7288516283157858922 -6576687606994373632 chip.bam2ta_ctl -4760573936687747603 TAG-ALIGN -6576687606994373632->-4760573936687747603 -4760573936687747603->-3824267305412785550 -5011856032231607242 Filt/deduped BAM -5011856032231607242->-6576687606994373632 -5011856032231607242->-8140889805433520607 -5011856032231607242->-7288516283157858922 1742015824475609747 chip.bam2ta_ctl 5610197263127060059 TAG-ALIGN 1742015824475609747->5610197263127060059 5610197263127060059->-3824267305412785550 -4947729942093954734 Filt/deduped BAM -4947729942093954734->1742015824475609747 -4947729942093954734->-8140889805433520607 -4947729942093954734->-7288516283157858922 -491029249130456386 chip.bam2ta_ctl -3181281554806509291 TAG-ALIGN -491029249130456386->-3181281554806509291 -3181281554806509291->-3824267305412785550 7660922874749207466 Filt/deduped BAM 7660922874749207466->-491029249130456386 7660922874749207466->-8140889805433520607 7660922874749207466->-7288516283157858922 -6333245525879906913 chip.bam2ta_ctl -8199569298437157494 TAG-ALIGN -6333245525879906913->-8199569298437157494 -8199569298437157494->-3824267305412785550 -7903901523473569061 Filt/deduped BAM -7903901523473569061->-6333245525879906913 -7903901523473569061->-8140889805433520607 -7903901523473569061->-7288516283157858922 -3131083225010595523 chip.bam2ta_ctl 1404947008413868928 TAG-ALIGN -3131083225010595523->1404947008413868928 1404947008413868928->-3824267305412785550 5237417433033243844 Filt/deduped BAM 5237417433033243844->-3131083225010595523 5237417433033243844->-8140889805433520607 5237417433033243844->-7288516283157858922 8732315648710267584 chip.bam2ta_ctl 8273297496972291238 TAG-ALIGN 8732315648710267584->8273297496972291238 8273297496972291238->-3824267305412785550 8227736688978373838 Filt/deduped BAM 8227736688978373838->8732315648710267584 8227736688978373838->-8140889805433520607 8227736688978373838->-7288516283157858922 6359484704666184235 chip.bam2ta_ctl -6512670630541868807 TAG-ALIGN 6359484704666184235->-6512670630541868807 -6512670630541868807->-3824267305412785550 -3779854396171609461 Filt/deduped BAM -3779854396171609461->6359484704666184235 -3779854396171609461->-8140889805433520607 -3779854396171609461->-7288516283157858922 -1146306394762122061 chip.bam2ta_ctl 2064221542090847935 TAG-ALIGN -1146306394762122061->2064221542090847935 2064221542090847935->-3824267305412785550 9166990827142239244 Filt/deduped BAM 9166990827142239244->-1146306394762122061 9166990827142239244->-8140889805433520607 9166990827142239244->-7288516283157858922 -3228512544386455914 chip.bam2ta_ctl -446183125560243776 TAG-ALIGN -3228512544386455914->-446183125560243776 -446183125560243776->-3824267305412785550 -3524069072488088917 Filt/deduped BAM -3524069072488088917->-3228512544386455914 -3524069072488088917->-8140889805433520607 -3524069072488088917->-7288516283157858922 -6258926572447846345 IDR Plot ppr -7944137718163661881->-6258926572447846345 -914813141993921534 IDR Peak ppr -7944137718163661881->-914813141993921534 -914813141993921534->6995491197779409285 409762546106577129 IDR Plot rep1_vs_rep2 -7045677652214141690->409762546106577129 -4980267633731118802 IDR NPeak rep1_vs_rep2 -7045677652214141690->-4980267633731118802 -4980267633731118802->6995491197779409285 351275690299981465 Overlap Peak rep1_vs_rep2 1984547702402206683->351275690299981465 351275690299981465->669228673355339665 7357804078754536111 Overlap Peak optimal 669228673355339665->7357804078754536111 -1564901706911166618 Overlap reproducibility 669228673355339665->-1564901706911166618 -2847254318906901073 IDR Peak optimal 6995491197779409285->-2847254318906901073 5578991337216206756 IDR reproducibility 6995491197779409285->5578991337216206756 -8330857730509747876 Overlap Peak ppr -5854130170700135530->-8330857730509747876 -8330857730509747876->669228673355339665 4870222186320592655 JSD Plot -8140889805433520607->4870222186320592655 -7288516283157858922->4870222186320592655

UCSC browser tracks

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