File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0dc84c9c-abd4-4d58-a4fb-7c9a709966bc/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/05dadee1-3e67-4bb5-91da-91fcf666e903/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF217XXN.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF217XXN.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF217XXN.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF217XXN.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF217XXN.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF183GXL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF183GXL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF183GXL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF183GXL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF183GXL.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF217XXN.crop_101-2bp.nodup.pr1_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF217XXN.crop_101-2bp.nodup.pr1_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF217XXN.crop_101-2bp.nodup.pr1_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF217XXN.crop_101-2bp.nodup.pr1_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF217XXN.crop_101-2bp.nodup.pr2_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF217XXN.crop_101-2bp.nodup.pr2_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF217XXN.crop_101-2bp.nodup.pr2_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF217XXN.crop_101-2bp.nodup.pr2_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF183GXL.crop_101-2bp.nodup.pr1_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF183GXL.crop_101-2bp.nodup.pr1_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF183GXL.crop_101-2bp.nodup.pr1_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF183GXL.crop_101-2bp.nodup.pr1_x_ctl.pooled.369M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF183GXL.crop_101-2bp.nodup.pr2_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF183GXL.crop_101-2bp.nodup.pr2_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF183GXL.crop_101-2bp.nodup.pr2_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF183GXL.crop_101-2bp.nodup.pr2_x_ctl.pooled.369M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF217XXN.crop_101-2bp.nodup.pr1_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF217XXN.crop_101-2bp.nodup.pr2_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF217XXN.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF217XXN.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF217XXN.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF217XXN.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF217XXN.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF217XXN.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF183GXL.crop_101-2bp.nodup.pr1_x_ctl.pooled.369M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF183GXL.crop_101-2bp.nodup.pr2_x_ctl.pooled.369M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF183GXL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF183GXL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF183GXL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF183GXL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF183GXL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF183GXL.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF217XXN.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/611c1654-a0cb-4e48-91d7-1d2925f99cec/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF217XXN.crop_101-2bp.nodup_x_ctl.pooled.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/7f2799a1-6cf3-4224-a465-9f369a6e3da4/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF183GXL.crop_101-2bp.nodup_x_ctl.pooled.369M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 -7777464607481515867 chip.macs2_signal_track_pooled 4581196744137615627 BW FC -7777464607481515867->4581196744137615627 -6251444440154137894 BW p-val -7777464607481515867->-6251444440154137894 5379672652690105982 chip.call_peak_pooled -485302015383459632 Peak (bfilt) 5379672652690105982->-485302015383459632 -3096803779426340547 Peak 5379672652690105982->-3096803779426340547 -4826371455998885653 chip.idr_ppr -3096803779426340547->-4826371455998885653 2352338034076656685 chip.idr -3096803779426340547->2352338034076656685 -3781285479778873778 chip.overlap -3096803779426340547->-3781285479778873778 7846762394070907360 chip.overlap_ppr -3096803779426340547->7846762394070907360 -3946456149040439600 chip.pool_ta 1254825177696077531 TAG-ALIGN -3946456149040439600->1254825177696077531 1254825177696077531->-7777464607481515867 1254825177696077531->5379672652690105982 1254825177696077531->-4826371455998885653 1254825177696077531->2352338034076656685 1254825177696077531->-3781285479778873778 1254825177696077531->7846762394070907360 423017631780679802 chip.call_peak -2863661607041907393 Peak (bfilt) 423017631780679802->-2863661607041907393 4726444489563295499 Peak 423017631780679802->4726444489563295499 4726444489563295499->2352338034076656685 4726444489563295499->-3781285479778873778 2956373471179658544 chip.reproducibility_overlap 4726444489563295499->2956373471179658544 8861373221471700543 chip.reproducibility_idr 4726444489563295499->8861373221471700543 6007034999124620404 chip.bam2ta -8635794512501692714 TAG-ALIGN 6007034999124620404->-8635794512501692714 -8635794512501692714->-3946456149040439600 -8635794512501692714->423017631780679802 -6139531006165676012 chip.macs2_signal_track -8635794512501692714->-6139531006165676012 -8635794512501692714->-4826371455998885653 -8635794512501692714->2956373471179658544 -8635794512501692714->8861373221471700543 -8635794512501692714->7846762394070907360 -8090839245826248890 chip.filter 3719779765021839870 SAMstats QC -8090839245826248890->3719779765021839870 557269951014437799 Filt/deduped BAM -8090839245826248890->557269951014437799 8986332005662670437 LibCmplx QC -8090839245826248890->8986332005662670437 557269951014437799->6007034999124620404 -6152905224797677599 chip.jsd 557269951014437799->-6152905224797677599 -7907542333197259536 chip.align 1759450182547909463 SAMstats QC -7907542333197259536->1759450182547909463 3266108540847115003 BAM -7907542333197259536->3266108540847115003 3266108540847115003->-8090839245826248890 4820790498344004173 chip.xcor -58310537501504099 XCOR Plot 4820790498344004173->-58310537501504099 8730607599025217837 BW FC -6139531006165676012->8730607599025217837 3581864494834885634 BW p-val -6139531006165676012->3581864494834885634 2605003829038080499 FASTQ R1 (1) 2605003829038080499->-7907542333197259536 2605003829038080499->4820790498344004173 3166137973854199720 FASTQ R2 (1) 3166137973854199720->-7907542333197259536 -4573967542632575023 chip.call_peak -543854637022472544 Peak (bfilt) -4573967542632575023->-543854637022472544 -9222126386152434368 Peak -4573967542632575023->-9222126386152434368 -9222126386152434368->2352338034076656685 -9222126386152434368->-3781285479778873778 -9222126386152434368->2956373471179658544 -9222126386152434368->8861373221471700543 -386769930826915330 chip.bam2ta -5675020632988250752 TAG-ALIGN -386769930826915330->-5675020632988250752 -5675020632988250752->-3946456149040439600 -5675020632988250752->-4573967542632575023 4831935767658077985 chip.macs2_signal_track -5675020632988250752->4831935767658077985 -5675020632988250752->-4826371455998885653 -5675020632988250752->2956373471179658544 -5675020632988250752->8861373221471700543 -5675020632988250752->7846762394070907360 -1907131023074775686 chip.filter -3470324115080383535 SAMstats QC -1907131023074775686->-3470324115080383535 -8849212649918385824 Filt/deduped BAM -1907131023074775686->-8849212649918385824 6377362647696632224 LibCmplx QC -1907131023074775686->6377362647696632224 -8849212649918385824->-386769930826915330 -8849212649918385824->-6152905224797677599 4605943157653260597 chip.align 7788365832263206827 SAMstats QC 4605943157653260597->7788365832263206827 2351198901654408795 BAM 4605943157653260597->2351198901654408795 2351198901654408795->-1907131023074775686 -7800824639211496153 chip.xcor 728173738692636371 XCOR Plot -7800824639211496153->728173738692636371 8153494818506385891 BW FC 4831935767658077985->8153494818506385891 157714681255512804 BW p-val 4831935767658077985->157714681255512804 -210172739111064295 FASTQ R1 (1) -210172739111064295->4605943157653260597 -210172739111064295->-7800824639211496153 -5964986805609825277 FASTQ R2 (1) -5964986805609825277->4605943157653260597 -7977475458571827081 chip.pool_ta_ctl -4904372998827902413 TAG-ALIGN -7977475458571827081->-4904372998827902413 -4904372998827902413->-7777464607481515867 -4904372998827902413->5379672652690105982 -4904372998827902413->423017631780679802 -4904372998827902413->-6139531006165676012 -4904372998827902413->-4573967542632575023 -4904372998827902413->4831935767658077985 -4904372998827902413->-4826371455998885653 -4904372998827902413->2956373471179658544 -4904372998827902413->8861373221471700543 -4904372998827902413->7846762394070907360 3372370889850603386 chip.bam2ta_ctl 7709549403968251711 TAG-ALIGN 3372370889850603386->7709549403968251711 7709549403968251711->-7977475458571827081 9034146431725390139 Filt/deduped BAM 9034146431725390139->3372370889850603386 9034146431725390139->-6152905224797677599 -4585112475595575361 chip.bam2ta_ctl -4519205295168737239 TAG-ALIGN -4585112475595575361->-4519205295168737239 -4519205295168737239->-7977475458571827081 3905245750531044195 Filt/deduped BAM 3905245750531044195->-4585112475595575361 3905245750531044195->-6152905224797677599 4514393423222968163 chip.bam2ta_ctl -7067011894685423728 TAG-ALIGN 4514393423222968163->-7067011894685423728 -7067011894685423728->-7977475458571827081 -1975678976120658515 Filt/deduped BAM -1975678976120658515->4514393423222968163 -1975678976120658515->-6152905224797677599 1585677114174477964 chip.bam2ta_ctl 9131406652246123583 TAG-ALIGN 1585677114174477964->9131406652246123583 9131406652246123583->-7977475458571827081 -5894366861890064764 Filt/deduped BAM -5894366861890064764->1585677114174477964 -5894366861890064764->-6152905224797677599 4784065708783755884 chip.bam2ta_ctl 2736555857717941937 TAG-ALIGN 4784065708783755884->2736555857717941937 2736555857717941937->-7977475458571827081 -4092081282743990385 Filt/deduped BAM -4092081282743990385->4784065708783755884 -4092081282743990385->-6152905224797677599 -6597275149536094472 chip.bam2ta_ctl 6715132412572929279 TAG-ALIGN -6597275149536094472->6715132412572929279 6715132412572929279->-7977475458571827081 -1358157576932804414 Filt/deduped BAM -1358157576932804414->-6597275149536094472 -1358157576932804414->-6152905224797677599 -4449680601971584026 IDR Plot ppr -4826371455998885653->-4449680601971584026 2201118184734927090 IDR Peak ppr -4826371455998885653->2201118184734927090 2201118184734927090->8861373221471700543 4267963437984287074 IDR Plot rep1_vs_rep2 2352338034076656685->4267963437984287074 -6762445385567942706 IDR NPeak rep1_vs_rep2 2352338034076656685->-6762445385567942706 -6762445385567942706->8861373221471700543 -3882673683419926390 Overlap Peak rep1_vs_rep2 -3781285479778873778->-3882673683419926390 -3882673683419926390->2956373471179658544 4504551790639213428 Overlap Peak optimal 2956373471179658544->4504551790639213428 354209217365675703 Overlap reproducibility 2956373471179658544->354209217365675703 -5791363315090856408 IDR Peak optimal 8861373221471700543->-5791363315090856408 8020682938859798603 IDR reproducibility 8861373221471700543->8020682938859798603 3068859419702268582 Overlap Peak ppr 7846762394070907360->3068859419702268582 3068859419702268582->2956373471179658544 -1549719427334956023 JSD Plot -6152905224797677599->-1549719427334956023

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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