File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF853ZLC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF853ZLC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF853ZLC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF853ZLC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF853ZLC.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF919KAD.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF919KAD.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF919KAD.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF919KAD.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919KAD.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF853ZLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF853ZLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF853ZLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF853ZLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF853ZLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF853ZLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF853ZLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF853ZLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF919KAD.crop_101-2bp.nodup.pr1_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF919KAD.crop_101-2bp.nodup.pr1_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF919KAD.crop_101-2bp.nodup.pr1_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF919KAD.crop_101-2bp.nodup.pr1_x_ctl.pooled.242M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF919KAD.crop_101-2bp.nodup.pr2_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF919KAD.crop_101-2bp.nodup.pr2_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF919KAD.crop_101-2bp.nodup.pr2_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF919KAD.crop_101-2bp.nodup.pr2_x_ctl.pooled.242M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.502M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF853ZLC.crop_101-2bp.nodup.pr1_x_ctl.pooled.260M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF853ZLC.crop_101-2bp.nodup.pr2_x_ctl.pooled.260M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF853ZLC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF853ZLC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF853ZLC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF853ZLC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF853ZLC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF853ZLC.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF919KAD.crop_101-2bp.nodup.pr1_x_ctl.pooled.242M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF919KAD.crop_101-2bp.nodup.pr2_x_ctl.pooled.242M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF919KAD.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF919KAD.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF919KAD.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF919KAD.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF919KAD.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF919KAD.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF853ZLC.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/89b7884a-abc3-4d8d-b8b1-2c3e8512fd7b/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.502M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.502M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF853ZLC.crop_101-2bp.nodup_x_ctl.pooled.260M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/36a1d876-39ed-4c93-aca4-cfb041b1ee22/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF919KAD.crop_101-2bp.nodup_x_ctl.pooled.242M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 7616064125487522172 chip.macs2_signal_track_pooled 3357359395030416002 BW FC 7616064125487522172->3357359395030416002 1914852496669205108 BW p-val 7616064125487522172->1914852496669205108 583493680497920663 chip.call_peak_pooled 3394439680963892342 Peak (bfilt) 583493680497920663->3394439680963892342 -8994152158381577506 Peak 583493680497920663->-8994152158381577506 -7051230742605712368 chip.idr_ppr -8994152158381577506->-7051230742605712368 -2576747021146836858 chip.idr -8994152158381577506->-2576747021146836858 -7468312702297096790 chip.overlap -8994152158381577506->-7468312702297096790 -3389196770296162678 chip.overlap_ppr -8994152158381577506->-3389196770296162678 -3664787158440100066 chip.pool_ta -4165071960642330886 TAG-ALIGN -3664787158440100066->-4165071960642330886 -4165071960642330886->7616064125487522172 -4165071960642330886->583493680497920663 -4165071960642330886->-7051230742605712368 -4165071960642330886->-2576747021146836858 -4165071960642330886->-7468312702297096790 -4165071960642330886->-3389196770296162678 -3942719368232413308 chip.call_peak 1840423915213287106 Peak (bfilt) -3942719368232413308->1840423915213287106 8164471760190577442 Peak -3942719368232413308->8164471760190577442 8164471760190577442->-2576747021146836858 8164471760190577442->-7468312702297096790 3369967286990177751 chip.reproducibility_overlap 8164471760190577442->3369967286990177751 -240661412001454961 chip.reproducibility_idr 8164471760190577442->-240661412001454961 2707789577211956609 chip.bam2ta -9154627712295245060 TAG-ALIGN 2707789577211956609->-9154627712295245060 -9154627712295245060->-3664787158440100066 -9154627712295245060->-3942719368232413308 -2294735975699918499 chip.macs2_signal_track -9154627712295245060->-2294735975699918499 -9154627712295245060->-7051230742605712368 -9154627712295245060->3369967286990177751 -9154627712295245060->-240661412001454961 -9154627712295245060->-3389196770296162678 1744870698903451754 chip.filter -7537956087907418242 SAMstats QC 1744870698903451754->-7537956087907418242 -6479812790819022264 Filt/deduped BAM 1744870698903451754->-6479812790819022264 3885579238157811313 LibCmplx QC 1744870698903451754->3885579238157811313 -6479812790819022264->2707789577211956609 -510774560583070089 chip.jsd -6479812790819022264->-510774560583070089 1046441940174714706 chip.align -6707694731551363402 SAMstats QC 1046441940174714706->-6707694731551363402 -3982074663385616771 BAM 1046441940174714706->-3982074663385616771 -3982074663385616771->1744870698903451754 -3233067857274101487 chip.xcor -573343686489748239 XCOR Plot -3233067857274101487->-573343686489748239 6882699776540758018 BW FC -2294735975699918499->6882699776540758018 4478921243496181344 BW p-val -2294735975699918499->4478921243496181344 -264841954163801842 FASTQ R1 (1) -264841954163801842->1046441940174714706 -264841954163801842->-3233067857274101487 -7593351428756298446 FASTQ R2 (1) -7593351428756298446->1046441940174714706 -5035136619774891892 chip.call_peak 6297529491015418707 Peak (bfilt) -5035136619774891892->6297529491015418707 282474575108234319 Peak -5035136619774891892->282474575108234319 282474575108234319->-2576747021146836858 282474575108234319->-7468312702297096790 282474575108234319->3369967286990177751 282474575108234319->-240661412001454961 7820237571107992043 chip.bam2ta 9087914260656019225 TAG-ALIGN 7820237571107992043->9087914260656019225 9087914260656019225->-3664787158440100066 9087914260656019225->-5035136619774891892 8602816045836546486 chip.macs2_signal_track 9087914260656019225->8602816045836546486 9087914260656019225->-7051230742605712368 9087914260656019225->3369967286990177751 9087914260656019225->-240661412001454961 9087914260656019225->-3389196770296162678 2748456558799170980 chip.filter 2072263784277727620 SAMstats QC 2748456558799170980->2072263784277727620 -839101905334521990 Filt/deduped BAM 2748456558799170980->-839101905334521990 -5800332878151867306 LibCmplx QC 2748456558799170980->-5800332878151867306 -839101905334521990->7820237571107992043 -839101905334521990->-510774560583070089 -178676635655820703 chip.align -8202949766314287637 SAMstats QC -178676635655820703->-8202949766314287637 -8271312534184777013 BAM -178676635655820703->-8271312534184777013 -8271312534184777013->2748456558799170980 -6696015719642252180 chip.xcor -3764369798042192854 XCOR Plot -6696015719642252180->-3764369798042192854 -1070946343217011306 BW FC 8602816045836546486->-1070946343217011306 1453191900841881925 BW p-val 8602816045836546486->1453191900841881925 -2070286818287067341 FASTQ R1 (1) -2070286818287067341->-178676635655820703 -2070286818287067341->-6696015719642252180 3415971429263784854 FASTQ R2 (1) 3415971429263784854->-178676635655820703 36367885181997194 chip.pool_ta_ctl 5963735756350084585 TAG-ALIGN 36367885181997194->5963735756350084585 5963735756350084585->7616064125487522172 5963735756350084585->583493680497920663 5963735756350084585->-3942719368232413308 5963735756350084585->-2294735975699918499 5963735756350084585->-5035136619774891892 5963735756350084585->8602816045836546486 5963735756350084585->-7051230742605712368 5963735756350084585->3369967286990177751 5963735756350084585->-240661412001454961 5963735756350084585->-3389196770296162678 -4392028807674060633 chip.bam2ta_ctl 4669845007386400866 TAG-ALIGN -4392028807674060633->4669845007386400866 4669845007386400866->36367885181997194 -885446220889586076 Filt/deduped BAM -885446220889586076->-4392028807674060633 -885446220889586076->-510774560583070089 -6487825258099118845 chip.bam2ta_ctl 738724569330662502 TAG-ALIGN -6487825258099118845->738724569330662502 738724569330662502->36367885181997194 1387568801114603803 Filt/deduped BAM 1387568801114603803->-6487825258099118845 1387568801114603803->-510774560583070089 1644666794753990683 chip.bam2ta_ctl -2198582001117462426 TAG-ALIGN 1644666794753990683->-2198582001117462426 -2198582001117462426->36367885181997194 -5626305128829779466 Filt/deduped BAM -5626305128829779466->1644666794753990683 -5626305128829779466->-510774560583070089 5830140295844885179 chip.bam2ta_ctl 9163549342158580397 TAG-ALIGN 5830140295844885179->9163549342158580397 9163549342158580397->36367885181997194 -5452984042189928732 Filt/deduped BAM -5452984042189928732->5830140295844885179 -5452984042189928732->-510774560583070089 -9080949669735482904 chip.bam2ta_ctl 7056411687045849406 TAG-ALIGN -9080949669735482904->7056411687045849406 7056411687045849406->36367885181997194 7816688521868880751 Filt/deduped BAM 7816688521868880751->-9080949669735482904 7816688521868880751->-510774560583070089 2065785704532221325 chip.bam2ta_ctl -6972390064485226837 TAG-ALIGN 2065785704532221325->-6972390064485226837 -6972390064485226837->36367885181997194 2819927310518821582 Filt/deduped BAM 2819927310518821582->2065785704532221325 2819927310518821582->-510774560583070089 -4899809132459506108 chip.bam2ta_ctl -7482989245179697402 TAG-ALIGN -4899809132459506108->-7482989245179697402 -7482989245179697402->36367885181997194 -928754865477017571 Filt/deduped BAM -928754865477017571->-4899809132459506108 -928754865477017571->-510774560583070089 -6999521270286766783 chip.bam2ta_ctl 3046349047950704479 TAG-ALIGN -6999521270286766783->3046349047950704479 3046349047950704479->36367885181997194 4529865018469439276 Filt/deduped BAM 4529865018469439276->-6999521270286766783 4529865018469439276->-510774560583070089 5580838443719657675 chip.bam2ta_ctl 3559733905977042296 TAG-ALIGN 5580838443719657675->3559733905977042296 3559733905977042296->36367885181997194 4289319075604151538 Filt/deduped BAM 4289319075604151538->5580838443719657675 4289319075604151538->-510774560583070089 -5097782434313762356 chip.bam2ta_ctl 7018677396282677159 TAG-ALIGN -5097782434313762356->7018677396282677159 7018677396282677159->36367885181997194 -2987637861722640329 Filt/deduped BAM -2987637861722640329->-5097782434313762356 -2987637861722640329->-510774560583070089 2518938525622101950 chip.bam2ta_ctl -59207848852725068 TAG-ALIGN 2518938525622101950->-59207848852725068 -59207848852725068->36367885181997194 -89812117180523079 Filt/deduped BAM -89812117180523079->2518938525622101950 -89812117180523079->-510774560583070089 975417153703732007 chip.bam2ta_ctl -3225255155771825290 TAG-ALIGN 975417153703732007->-3225255155771825290 -3225255155771825290->36367885181997194 -8101157691774938071 Filt/deduped BAM -8101157691774938071->975417153703732007 -8101157691774938071->-510774560583070089 3746458800470558615 chip.bam2ta_ctl -8904756429520915019 TAG-ALIGN 3746458800470558615->-8904756429520915019 -8904756429520915019->36367885181997194 -7907963878176461919 Filt/deduped BAM -7907963878176461919->3746458800470558615 -7907963878176461919->-510774560583070089 -3410268332005252958 chip.bam2ta_ctl -1308537158275798202 TAG-ALIGN -3410268332005252958->-1308537158275798202 -1308537158275798202->36367885181997194 -4695306071668781142 Filt/deduped BAM -4695306071668781142->-3410268332005252958 -4695306071668781142->-510774560583070089 3085086150983926802 chip.bam2ta_ctl -5039550232820186103 TAG-ALIGN 3085086150983926802->-5039550232820186103 -5039550232820186103->36367885181997194 3897766076803788730 Filt/deduped BAM 3897766076803788730->3085086150983926802 3897766076803788730->-510774560583070089 7363061978872460629 chip.bam2ta_ctl 7468572791579509101 TAG-ALIGN 7363061978872460629->7468572791579509101 7468572791579509101->36367885181997194 -6615832923529914790 Filt/deduped BAM -6615832923529914790->7363061978872460629 -6615832923529914790->-510774560583070089 -2328893927098852922 chip.bam2ta_ctl -9218110121100320318 TAG-ALIGN -2328893927098852922->-9218110121100320318 -9218110121100320318->36367885181997194 -2657241777166480811 Filt/deduped BAM -2657241777166480811->-2328893927098852922 -2657241777166480811->-510774560583070089 451479371755719231 chip.bam2ta_ctl 6112176780232802695 TAG-ALIGN 451479371755719231->6112176780232802695 6112176780232802695->36367885181997194 1536269390947088616 Filt/deduped BAM 1536269390947088616->451479371755719231 1536269390947088616->-510774560583070089 -3392626270228927849 chip.bam2ta_ctl 2348208656044596444 TAG-ALIGN -3392626270228927849->2348208656044596444 2348208656044596444->36367885181997194 909679936128180800 Filt/deduped BAM 909679936128180800->-3392626270228927849 909679936128180800->-510774560583070089 -891196888525524048 chip.bam2ta_ctl -7262703939346121068 TAG-ALIGN -891196888525524048->-7262703939346121068 -7262703939346121068->36367885181997194 -3142494219535465068 Filt/deduped BAM -3142494219535465068->-891196888525524048 -3142494219535465068->-510774560583070089 3417339124474144875 chip.bam2ta_ctl -9167209661795464812 TAG-ALIGN 3417339124474144875->-9167209661795464812 -9167209661795464812->36367885181997194 5961536534013820962 Filt/deduped BAM 5961536534013820962->3417339124474144875 5961536534013820962->-510774560583070089 -5931677645155316067 chip.bam2ta_ctl -3533365274641389265 TAG-ALIGN -5931677645155316067->-3533365274641389265 -3533365274641389265->36367885181997194 1461879500388630402 Filt/deduped BAM 1461879500388630402->-5931677645155316067 1461879500388630402->-510774560583070089 -6781512358262941011 chip.bam2ta_ctl -530052149407513778 TAG-ALIGN -6781512358262941011->-530052149407513778 -530052149407513778->36367885181997194 2755064984097585592 Filt/deduped BAM 2755064984097585592->-6781512358262941011 2755064984097585592->-510774560583070089 706160370957406421 chip.bam2ta_ctl -4309214354124475167 TAG-ALIGN 706160370957406421->-4309214354124475167 -4309214354124475167->36367885181997194 7144205651094083014 Filt/deduped BAM 7144205651094083014->706160370957406421 7144205651094083014->-510774560583070089 3350237392455401531 IDR Plot ppr -7051230742605712368->3350237392455401531 -4881876861794523506 IDR Peak ppr -7051230742605712368->-4881876861794523506 -4881876861794523506->-240661412001454961 -3137838146702243294 IDR Plot rep1_vs_rep2 -2576747021146836858->-3137838146702243294 -6694132879968620578 IDR NPeak rep1_vs_rep2 -2576747021146836858->-6694132879968620578 -6694132879968620578->-240661412001454961 -565666120767170301 Overlap Peak rep1_vs_rep2 -7468312702297096790->-565666120767170301 -565666120767170301->3369967286990177751 4015447135693314058 Overlap Peak optimal 3369967286990177751->4015447135693314058 2588616362848825771 Overlap reproducibility 3369967286990177751->2588616362848825771 -1496922239565928654 IDR Peak optimal -240661412001454961->-1496922239565928654 5150330071226760995 IDR reproducibility -240661412001454961->5150330071226760995 -9029659969270814578 Overlap Peak ppr -3389196770296162678->-9029659969270814578 -9029659969270814578->3369967286990177751 1286256311258739151 JSD Plot -510774560583070089->1286256311258739151

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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