File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF139YAL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF139YAL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF139YAL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF139YAL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF139YAL.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF413XPW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF413XPW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413XPW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413XPW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF413XPW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.482M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.482M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.482M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.482M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.482M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.482M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.482M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF139YAL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF139YAL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF139YAL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF139YAL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF139YAL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF139YAL.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF413XPW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF413XPW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF413XPW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF413XPW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413XPW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413XPW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF139YAL.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.482M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.482M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 4865216870898376859 chip.macs2_signal_track_pooled -7383693774057233292 BW FC 4865216870898376859->-7383693774057233292 -6152881938962973692 BW p-val 4865216870898376859->-6152881938962973692 8280045361394389622 chip.call_peak_pooled 323206725061930868 Peak (bfilt) 8280045361394389622->323206725061930868 6636301402445584949 Peak 8280045361394389622->6636301402445584949 4703097970669621024 chip.idr_ppr 6636301402445584949->4703097970669621024 -2504262248226326130 chip.idr 6636301402445584949->-2504262248226326130 -2019817282135416127 chip.overlap 6636301402445584949->-2019817282135416127 2639169726101125201 chip.overlap_ppr 6636301402445584949->2639169726101125201 -7954973295938034504 chip.pool_ta -314498245975287724 TAG-ALIGN -7954973295938034504->-314498245975287724 -314498245975287724->4865216870898376859 -314498245975287724->8280045361394389622 -314498245975287724->4703097970669621024 -314498245975287724->-2504262248226326130 -314498245975287724->-2019817282135416127 -314498245975287724->2639169726101125201 916890521092015644 chip.call_peak -2942303486668498628 Peak (bfilt) 916890521092015644->-2942303486668498628 -6828120460199069387 Peak 916890521092015644->-6828120460199069387 -6828120460199069387->-2504262248226326130 -6828120460199069387->-2019817282135416127 -5715211694947998485 chip.reproducibility_overlap -6828120460199069387->-5715211694947998485 6964931588802202833 chip.reproducibility_idr -6828120460199069387->6964931588802202833 -6312862690541484100 chip.bam2ta -4605701944413496001 TAG-ALIGN -6312862690541484100->-4605701944413496001 -4605701944413496001->-7954973295938034504 -4605701944413496001->916890521092015644 5458536585769143192 chip.macs2_signal_track -4605701944413496001->5458536585769143192 -4605701944413496001->4703097970669621024 -4605701944413496001->-5715211694947998485 -4605701944413496001->6964931588802202833 -4605701944413496001->2639169726101125201 3487047453104601674 chip.filter 1224281864359369027 SAMstats QC 3487047453104601674->1224281864359369027 -2170912263697203608 Filt/deduped BAM 3487047453104601674->-2170912263697203608 8483636334718517624 LibCmplx QC 3487047453104601674->8483636334718517624 -2170912263697203608->-6312862690541484100 -3386400735628238258 chip.jsd -2170912263697203608->-3386400735628238258 5776460212253866589 chip.align -5910153983650256424 SAMstats QC 5776460212253866589->-5910153983650256424 -7368327797791537298 BAM 5776460212253866589->-7368327797791537298 -7368327797791537298->3487047453104601674 154878154805320925 chip.xcor -4154229697432242665 XCOR Plot 154878154805320925->-4154229697432242665 2820406227596179156 BW FC 5458536585769143192->2820406227596179156 -2854418394191691960 BW p-val 5458536585769143192->-2854418394191691960 1827283013040601284 FASTQ R1 (1) 1827283013040601284->5776460212253866589 1827283013040601284->154878154805320925 -2714916510173445866 FASTQ R2 (1) -2714916510173445866->5776460212253866589 6735484282766391872 chip.call_peak 556178035078995226 Peak (bfilt) 6735484282766391872->556178035078995226 7880511513948439784 Peak 6735484282766391872->7880511513948439784 7880511513948439784->-2504262248226326130 7880511513948439784->-2019817282135416127 7880511513948439784->-5715211694947998485 7880511513948439784->6964931588802202833 -6202849239478553099 chip.bam2ta 6209220634227914245 TAG-ALIGN -6202849239478553099->6209220634227914245 6209220634227914245->-7954973295938034504 6209220634227914245->6735484282766391872 5285065320632305740 chip.macs2_signal_track 6209220634227914245->5285065320632305740 6209220634227914245->4703097970669621024 6209220634227914245->-5715211694947998485 6209220634227914245->6964931588802202833 6209220634227914245->2639169726101125201 3600911737382706036 chip.filter -8512216244893494923 SAMstats QC 3600911737382706036->-8512216244893494923 6266201592584012604 Filt/deduped BAM 3600911737382706036->6266201592584012604 -6395541770612655020 LibCmplx QC 3600911737382706036->-6395541770612655020 6266201592584012604->-6202849239478553099 6266201592584012604->-3386400735628238258 1376141793197141359 chip.align -8857220148845881986 SAMstats QC 1376141793197141359->-8857220148845881986 4216886983034538407 BAM 1376141793197141359->4216886983034538407 4216886983034538407->3600911737382706036 778465066530849704 chip.xcor -3354254183048323057 XCOR Plot 778465066530849704->-3354254183048323057 7970834325915444275 BW FC 5285065320632305740->7970834325915444275 -2293991852981933723 BW p-val 5285065320632305740->-2293991852981933723 -874580207649215032 FASTQ R1 (1) -874580207649215032->1376141793197141359 -874580207649215032->778465066530849704 8059291063673957722 FASTQ R2 (1) 8059291063673957722->1376141793197141359 -3331399447840185726 chip.pool_ta_ctl 1227497648557112762 TAG-ALIGN -3331399447840185726->1227497648557112762 1227497648557112762->4865216870898376859 1227497648557112762->8280045361394389622 1227497648557112762->916890521092015644 1227497648557112762->5458536585769143192 1227497648557112762->6735484282766391872 1227497648557112762->5285065320632305740 1227497648557112762->4703097970669621024 1227497648557112762->-5715211694947998485 1227497648557112762->6964931588802202833 1227497648557112762->2639169726101125201 -7835480426774594829 chip.bam2ta_ctl 649555169061211912 TAG-ALIGN -7835480426774594829->649555169061211912 649555169061211912->-3331399447840185726 3893525280544971364 Filt/deduped BAM 3893525280544971364->-7835480426774594829 3893525280544971364->-3386400735628238258 -4213461749470333085 chip.bam2ta_ctl -8637519027679476899 TAG-ALIGN -4213461749470333085->-8637519027679476899 -8637519027679476899->-3331399447840185726 -5167768855234586844 Filt/deduped BAM -5167768855234586844->-4213461749470333085 -5167768855234586844->-3386400735628238258 -1183811694291217255 chip.bam2ta_ctl -7449677205966978054 TAG-ALIGN -1183811694291217255->-7449677205966978054 -7449677205966978054->-3331399447840185726 -3662208577751243470 Filt/deduped BAM -3662208577751243470->-1183811694291217255 -3662208577751243470->-3386400735628238258 5187262177761559846 chip.bam2ta_ctl -4155017786337621134 TAG-ALIGN 5187262177761559846->-4155017786337621134 -4155017786337621134->-3331399447840185726 -6909962128561289326 Filt/deduped BAM -6909962128561289326->5187262177761559846 -6909962128561289326->-3386400735628238258 725766343469640485 chip.bam2ta_ctl -1359221490430243926 TAG-ALIGN 725766343469640485->-1359221490430243926 -1359221490430243926->-3331399447840185726 8267168149526294292 Filt/deduped BAM 8267168149526294292->725766343469640485 8267168149526294292->-3386400735628238258 -4380672587220067421 chip.bam2ta_ctl 1500228422531848537 TAG-ALIGN -4380672587220067421->1500228422531848537 1500228422531848537->-3331399447840185726 -8782818980035589876 Filt/deduped BAM -8782818980035589876->-4380672587220067421 -8782818980035589876->-3386400735628238258 -5994082635295287897 chip.bam2ta_ctl 3640916765855625429 TAG-ALIGN -5994082635295287897->3640916765855625429 3640916765855625429->-3331399447840185726 1474380014319297613 Filt/deduped BAM 1474380014319297613->-5994082635295287897 1474380014319297613->-3386400735628238258 4409184923351465763 chip.bam2ta_ctl 834496993011111048 TAG-ALIGN 4409184923351465763->834496993011111048 834496993011111048->-3331399447840185726 8863465357686303885 Filt/deduped BAM 8863465357686303885->4409184923351465763 8863465357686303885->-3386400735628238258 -5725250709574431894 chip.bam2ta_ctl 4019733554301841302 TAG-ALIGN -5725250709574431894->4019733554301841302 4019733554301841302->-3331399447840185726 -6890489129196760069 Filt/deduped BAM -6890489129196760069->-5725250709574431894 -6890489129196760069->-3386400735628238258 9148859588394247749 chip.bam2ta_ctl -2483958245164256121 TAG-ALIGN 9148859588394247749->-2483958245164256121 -2483958245164256121->-3331399447840185726 1460435048566867160 Filt/deduped BAM 1460435048566867160->9148859588394247749 1460435048566867160->-3386400735628238258 -820490079985129734 chip.bam2ta_ctl -5258506556722979399 TAG-ALIGN -820490079985129734->-5258506556722979399 -5258506556722979399->-3331399447840185726 7551113421154677192 Filt/deduped BAM 7551113421154677192->-820490079985129734 7551113421154677192->-3386400735628238258 7354094087956650430 chip.bam2ta_ctl -3790861469136613776 TAG-ALIGN 7354094087956650430->-3790861469136613776 -3790861469136613776->-3331399447840185726 7606486558674152532 Filt/deduped BAM 7606486558674152532->7354094087956650430 7606486558674152532->-3386400735628238258 2265519664806434843 chip.bam2ta_ctl -9024217777901190494 TAG-ALIGN 2265519664806434843->-9024217777901190494 -9024217777901190494->-3331399447840185726 7348698903598937038 Filt/deduped BAM 7348698903598937038->2265519664806434843 7348698903598937038->-3386400735628238258 205165881562363447 chip.bam2ta_ctl 2137691645323191911 TAG-ALIGN 205165881562363447->2137691645323191911 2137691645323191911->-3331399447840185726 -7710772811175616342 Filt/deduped BAM -7710772811175616342->205165881562363447 -7710772811175616342->-3386400735628238258 -394831409624631638 chip.bam2ta_ctl -5912231743999909302 TAG-ALIGN -394831409624631638->-5912231743999909302 -5912231743999909302->-3331399447840185726 4767266764182394937 Filt/deduped BAM 4767266764182394937->-394831409624631638 4767266764182394937->-3386400735628238258 9087385617327619225 chip.bam2ta_ctl -9061596465483977716 TAG-ALIGN 9087385617327619225->-9061596465483977716 -9061596465483977716->-3331399447840185726 8011548649816930443 Filt/deduped BAM 8011548649816930443->9087385617327619225 8011548649816930443->-3386400735628238258 -8498747571144188626 chip.bam2ta_ctl -6675454774898810325 TAG-ALIGN -8498747571144188626->-6675454774898810325 -6675454774898810325->-3331399447840185726 -5661273275888016612 Filt/deduped BAM -5661273275888016612->-8498747571144188626 -5661273275888016612->-3386400735628238258 3453934794094340412 chip.bam2ta_ctl -3503371841268383122 TAG-ALIGN 3453934794094340412->-3503371841268383122 -3503371841268383122->-3331399447840185726 -501951131665358798 Filt/deduped BAM -501951131665358798->3453934794094340412 -501951131665358798->-3386400735628238258 -3719968788757926980 chip.bam2ta_ctl 7308901779032811786 TAG-ALIGN -3719968788757926980->7308901779032811786 7308901779032811786->-3331399447840185726 -7578102947415562049 Filt/deduped BAM -7578102947415562049->-3719968788757926980 -7578102947415562049->-3386400735628238258 6037485408019821801 chip.bam2ta_ctl -2763922391308206499 TAG-ALIGN 6037485408019821801->-2763922391308206499 -2763922391308206499->-3331399447840185726 -1003565204487236060 Filt/deduped BAM -1003565204487236060->6037485408019821801 -1003565204487236060->-3386400735628238258 -8642208829663052275 chip.bam2ta_ctl -3213195378686821395 TAG-ALIGN -8642208829663052275->-3213195378686821395 -3213195378686821395->-3331399447840185726 -1932537400281269803 Filt/deduped BAM -1932537400281269803->-8642208829663052275 -1932537400281269803->-3386400735628238258 4090528493975244508 chip.bam2ta_ctl -4985162009782159855 TAG-ALIGN 4090528493975244508->-4985162009782159855 -4985162009782159855->-3331399447840185726 -3673897005613694969 Filt/deduped BAM -3673897005613694969->4090528493975244508 -3673897005613694969->-3386400735628238258 -1945041113866309105 chip.bam2ta_ctl -3919280359688420441 TAG-ALIGN -1945041113866309105->-3919280359688420441 -3919280359688420441->-3331399447840185726 -8272771291703922961 Filt/deduped BAM -8272771291703922961->-1945041113866309105 -8272771291703922961->-3386400735628238258 2929490672521121961 chip.bam2ta_ctl -8869370410512094753 TAG-ALIGN 2929490672521121961->-8869370410512094753 -8869370410512094753->-3331399447840185726 422988053979797510 Filt/deduped BAM 422988053979797510->2929490672521121961 422988053979797510->-3386400735628238258 5986954010315475132 IDR Plot ppr 4703097970669621024->5986954010315475132 -3782540854593282480 IDR Peak ppr 4703097970669621024->-3782540854593282480 -3782540854593282480->6964931588802202833 8476817420864811895 IDR Plot rep1_vs_rep2 -2504262248226326130->8476817420864811895 -6633590708432708940 IDR NPeak rep1_vs_rep2 -2504262248226326130->-6633590708432708940 -6633590708432708940->6964931588802202833 -4973639711572571282 Overlap Peak rep1_vs_rep2 -2019817282135416127->-4973639711572571282 -4973639711572571282->-5715211694947998485 5651179515609120829 Overlap Peak optimal -5715211694947998485->5651179515609120829 -3197951345791623371 Overlap reproducibility -5715211694947998485->-3197951345791623371 7918548031626712367 IDR Peak optimal 6964931588802202833->7918548031626712367 1016453501338377018 IDR reproducibility 6964931588802202833->1016453501338377018 3751326123254701558 Overlap Peak ppr 2639169726101125201->3751326123254701558 3751326123254701558->-5715211694947998485 6046668546186147660 JSD Plot -3386400735628238258->6046668546186147660

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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