File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF139YAL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF139YAL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF139YAL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF139YAL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF139YAL.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF413XPW.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF413XPW.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413XPW.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413XPW.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF413XPW.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.482M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.482M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.482M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.482M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF139YAL.crop_101-2bp.nodup.pr1_x_ctl.pooled.257M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF139YAL.crop_101-2bp.nodup.pr2_x_ctl.pooled.257M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF139YAL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF139YAL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF139YAL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF139YAL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF139YAL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF139YAL.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413XPW.crop_101-2bp.nodup.pr1_x_ctl.pooled.224M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413XPW.crop_101-2bp.nodup.pr2_x_ctl.pooled.224M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF413XPW.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF413XPW.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF413XPW.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF413XPW.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413XPW.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413XPW.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF139YAL.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/282e8ed6-e481-46fd-ad95-772a03b3c0ac/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.482M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.482M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF413XPW.crop_101-2bp.nodup_x_ctl.pooled.224M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 3192988065768692515 chip.macs2_signal_track_pooled 8480382158070061470 BW FC 3192988065768692515->8480382158070061470 -3740208029620415746 BW p-val 3192988065768692515->-3740208029620415746 998666495531473217 chip.call_peak_pooled -8842206941226983457 Peak (bfilt) 998666495531473217->-8842206941226983457 6363359668670902338 Peak 998666495531473217->6363359668670902338 1356977786911400536 chip.idr_ppr 6363359668670902338->1356977786911400536 -6589520162127805602 chip.idr 6363359668670902338->-6589520162127805602 -6353234146732660838 chip.overlap 6363359668670902338->-6353234146732660838 -2261086337724294194 chip.overlap_ppr 6363359668670902338->-2261086337724294194 -3725691085039239624 chip.pool_ta 3252743800550670836 TAG-ALIGN -3725691085039239624->3252743800550670836 3252743800550670836->3192988065768692515 3252743800550670836->998666495531473217 3252743800550670836->1356977786911400536 3252743800550670836->-6589520162127805602 3252743800550670836->-6353234146732660838 3252743800550670836->-2261086337724294194 -7531373581339280592 chip.call_peak -7424127553904029510 Peak (bfilt) -7531373581339280592->-7424127553904029510 26839212853017085 Peak -7531373581339280592->26839212853017085 26839212853017085->-6589520162127805602 26839212853017085->-6353234146732660838 -1230632020070391338 chip.reproducibility_overlap 26839212853017085->-1230632020070391338 1564229285727050142 chip.reproducibility_idr 26839212853017085->1564229285727050142 -5836609854418660323 chip.bam2ta -8917244366028246532 TAG-ALIGN -5836609854418660323->-8917244366028246532 -8917244366028246532->-3725691085039239624 -8917244366028246532->-7531373581339280592 -568139058957177410 chip.macs2_signal_track -8917244366028246532->-568139058957177410 -8917244366028246532->1356977786911400536 -8917244366028246532->-1230632020070391338 -8917244366028246532->1564229285727050142 -8917244366028246532->-2261086337724294194 3054690621592445053 chip.filter 307481647884741830 SAMstats QC 3054690621592445053->307481647884741830 -3050997577158752800 Filt/deduped BAM 3054690621592445053->-3050997577158752800 -8939109088644104756 LibCmplx QC 3054690621592445053->-8939109088644104756 -3050997577158752800->-5836609854418660323 2460565415393570903 chip.jsd -3050997577158752800->2460565415393570903 -2386686816099849785 chip.align -1437218539788083757 SAMstats QC -2386686816099849785->-1437218539788083757 8249597282959487511 BAM -2386686816099849785->8249597282959487511 8249597282959487511->3054690621592445053 -7116782339124959841 chip.xcor -2700433721683330033 XCOR Plot -7116782339124959841->-2700433721683330033 8012158186830119238 BW FC -568139058957177410->8012158186830119238 -6823213129034454069 BW p-val -568139058957177410->-6823213129034454069 -3589644359220800195 FASTQ R1 (1) -3589644359220800195->-2386686816099849785 -3589644359220800195->-7116782339124959841 -1286222150304326168 FASTQ R2 (1) -1286222150304326168->-2386686816099849785 7869857498671459644 chip.call_peak -3175828741765880182 Peak (bfilt) 7869857498671459644->-3175828741765880182 4720957854477064321 Peak 7869857498671459644->4720957854477064321 4720957854477064321->-6589520162127805602 4720957854477064321->-6353234146732660838 4720957854477064321->-1230632020070391338 4720957854477064321->1564229285727050142 2152919677224144378 chip.bam2ta 7035346543679223334 TAG-ALIGN 2152919677224144378->7035346543679223334 7035346543679223334->-3725691085039239624 7035346543679223334->7869857498671459644 -924491589080493781 chip.macs2_signal_track 7035346543679223334->-924491589080493781 7035346543679223334->1356977786911400536 7035346543679223334->-1230632020070391338 7035346543679223334->1564229285727050142 7035346543679223334->-2261086337724294194 3762653740818825230 chip.filter 638022250536390741 SAMstats QC 3762653740818825230->638022250536390741 -4170935837144183970 Filt/deduped BAM 3762653740818825230->-4170935837144183970 5741129008590600389 LibCmplx QC 3762653740818825230->5741129008590600389 -4170935837144183970->2152919677224144378 -4170935837144183970->2460565415393570903 -594812896485600244 chip.align -8321243903622904895 SAMstats QC -594812896485600244->-8321243903622904895 -1432637660476020338 BAM -594812896485600244->-1432637660476020338 -1432637660476020338->3762653740818825230 1669232026839279727 chip.xcor 5608402240264653304 XCOR Plot 1669232026839279727->5608402240264653304 5488311223994925021 BW FC -924491589080493781->5488311223994925021 8336704765629698300 BW p-val -924491589080493781->8336704765629698300 2612544023744526974 FASTQ R1 (1) 2612544023744526974->-594812896485600244 2612544023744526974->1669232026839279727 -1012614957028831066 FASTQ R2 (1) -1012614957028831066->-594812896485600244 7972350603121656199 chip.pool_ta_ctl 6692983822150607567 TAG-ALIGN 7972350603121656199->6692983822150607567 6692983822150607567->3192988065768692515 6692983822150607567->998666495531473217 6692983822150607567->-7531373581339280592 6692983822150607567->-568139058957177410 6692983822150607567->7869857498671459644 6692983822150607567->-924491589080493781 6692983822150607567->1356977786911400536 6692983822150607567->-1230632020070391338 6692983822150607567->1564229285727050142 6692983822150607567->-2261086337724294194 -2627115221221758815 chip.bam2ta_ctl 8124164392397815061 TAG-ALIGN -2627115221221758815->8124164392397815061 8124164392397815061->7972350603121656199 -4315475328179430654 Filt/deduped BAM -4315475328179430654->-2627115221221758815 -4315475328179430654->2460565415393570903 96548430413947701 chip.bam2ta_ctl -8735398696697257818 TAG-ALIGN 96548430413947701->-8735398696697257818 -8735398696697257818->7972350603121656199 7595435269088936824 Filt/deduped BAM 7595435269088936824->96548430413947701 7595435269088936824->2460565415393570903 -8126309932010328939 chip.bam2ta_ctl 8167587847624754659 TAG-ALIGN -8126309932010328939->8167587847624754659 8167587847624754659->7972350603121656199 7699034329844172366 Filt/deduped BAM 7699034329844172366->-8126309932010328939 7699034329844172366->2460565415393570903 5171195794630368964 chip.bam2ta_ctl -8748479637281326027 TAG-ALIGN 5171195794630368964->-8748479637281326027 -8748479637281326027->7972350603121656199 -820700480509444254 Filt/deduped BAM -820700480509444254->5171195794630368964 -820700480509444254->2460565415393570903 7902662906617166226 chip.bam2ta_ctl 7558735303264079878 TAG-ALIGN 7902662906617166226->7558735303264079878 7558735303264079878->7972350603121656199 -3496568029869374368 Filt/deduped BAM -3496568029869374368->7902662906617166226 -3496568029869374368->2460565415393570903 -2222944975531556119 chip.bam2ta_ctl 5516422815389386232 TAG-ALIGN -2222944975531556119->5516422815389386232 5516422815389386232->7972350603121656199 3771262956858218434 Filt/deduped BAM 3771262956858218434->-2222944975531556119 3771262956858218434->2460565415393570903 -5232584431055550384 chip.bam2ta_ctl 1713010682015427608 TAG-ALIGN -5232584431055550384->1713010682015427608 1713010682015427608->7972350603121656199 2773214592751738250 Filt/deduped BAM 2773214592751738250->-5232584431055550384 2773214592751738250->2460565415393570903 -3535287701188026595 chip.bam2ta_ctl -4788106214548452922 TAG-ALIGN -3535287701188026595->-4788106214548452922 -4788106214548452922->7972350603121656199 -3264508317956072258 Filt/deduped BAM -3264508317956072258->-3535287701188026595 -3264508317956072258->2460565415393570903 -6702136150146050655 chip.bam2ta_ctl 2726716652457575044 TAG-ALIGN -6702136150146050655->2726716652457575044 2726716652457575044->7972350603121656199 1341265189380992613 Filt/deduped BAM 1341265189380992613->-6702136150146050655 1341265189380992613->2460565415393570903 -1373446007466509051 chip.bam2ta_ctl -972179710265851450 TAG-ALIGN -1373446007466509051->-972179710265851450 -972179710265851450->7972350603121656199 -6342644501244994608 Filt/deduped BAM -6342644501244994608->-1373446007466509051 -6342644501244994608->2460565415393570903 8562682449228521840 chip.bam2ta_ctl -2987017977169364579 TAG-ALIGN 8562682449228521840->-2987017977169364579 -2987017977169364579->7972350603121656199 4914351830952648597 Filt/deduped BAM 4914351830952648597->8562682449228521840 4914351830952648597->2460565415393570903 2194247536540858187 chip.bam2ta_ctl -3260082869871080414 TAG-ALIGN 2194247536540858187->-3260082869871080414 -3260082869871080414->7972350603121656199 7023831575035235068 Filt/deduped BAM 7023831575035235068->2194247536540858187 7023831575035235068->2460565415393570903 -8656741872886119538 chip.bam2ta_ctl -9085119908992559185 TAG-ALIGN -8656741872886119538->-9085119908992559185 -9085119908992559185->7972350603121656199 8842470556463938927 Filt/deduped BAM 8842470556463938927->-8656741872886119538 8842470556463938927->2460565415393570903 -7898348020247752220 chip.bam2ta_ctl 422813317175245752 TAG-ALIGN -7898348020247752220->422813317175245752 422813317175245752->7972350603121656199 7976451663431202967 Filt/deduped BAM 7976451663431202967->-7898348020247752220 7976451663431202967->2460565415393570903 -1473848657032103270 chip.bam2ta_ctl -2385017761549642486 TAG-ALIGN -1473848657032103270->-2385017761549642486 -2385017761549642486->7972350603121656199 -9117336938604058730 Filt/deduped BAM -9117336938604058730->-1473848657032103270 -9117336938604058730->2460565415393570903 -8106440172432127274 chip.bam2ta_ctl 4122838481314799993 TAG-ALIGN -8106440172432127274->4122838481314799993 4122838481314799993->7972350603121656199 4716894477554156488 Filt/deduped BAM 4716894477554156488->-8106440172432127274 4716894477554156488->2460565415393570903 9093687272685837934 chip.bam2ta_ctl 6203605931964485658 TAG-ALIGN 9093687272685837934->6203605931964485658 6203605931964485658->7972350603121656199 -8356910829060278852 Filt/deduped BAM -8356910829060278852->9093687272685837934 -8356910829060278852->2460565415393570903 2563372406498342982 chip.bam2ta_ctl 7727476646821506089 TAG-ALIGN 2563372406498342982->7727476646821506089 7727476646821506089->7972350603121656199 5988440668076946158 Filt/deduped BAM 5988440668076946158->2563372406498342982 5988440668076946158->2460565415393570903 -5919793456395657736 chip.bam2ta_ctl -6610300355918353385 TAG-ALIGN -5919793456395657736->-6610300355918353385 -6610300355918353385->7972350603121656199 8125575275431718039 Filt/deduped BAM 8125575275431718039->-5919793456395657736 8125575275431718039->2460565415393570903 -9021107813253830060 chip.bam2ta_ctl 532253569678961760 TAG-ALIGN -9021107813253830060->532253569678961760 532253569678961760->7972350603121656199 5561423475112682445 Filt/deduped BAM 5561423475112682445->-9021107813253830060 5561423475112682445->2460565415393570903 -4933919751467371580 chip.bam2ta_ctl -4609513718246190041 TAG-ALIGN -4933919751467371580->-4609513718246190041 -4609513718246190041->7972350603121656199 -2424289063591574919 Filt/deduped BAM -2424289063591574919->-4933919751467371580 -2424289063591574919->2460565415393570903 7292726494680250219 chip.bam2ta_ctl -5887541407662291136 TAG-ALIGN 7292726494680250219->-5887541407662291136 -5887541407662291136->7972350603121656199 2492598715945816436 Filt/deduped BAM 2492598715945816436->7292726494680250219 2492598715945816436->2460565415393570903 -106672091572547351 chip.bam2ta_ctl 1375841705711679462 TAG-ALIGN -106672091572547351->1375841705711679462 1375841705711679462->7972350603121656199 9189419615127830749 Filt/deduped BAM 9189419615127830749->-106672091572547351 9189419615127830749->2460565415393570903 -5034153726393962386 chip.bam2ta_ctl -174826375982753049 TAG-ALIGN -5034153726393962386->-174826375982753049 -174826375982753049->7972350603121656199 8804832709156735154 Filt/deduped BAM 8804832709156735154->-5034153726393962386 8804832709156735154->2460565415393570903 -8157054163478243292 IDR Plot ppr 1356977786911400536->-8157054163478243292 5086014953699244163 IDR Peak ppr 1356977786911400536->5086014953699244163 5086014953699244163->1564229285727050142 8128319373122379835 IDR Plot rep1_vs_rep2 -6589520162127805602->8128319373122379835 7086634030335194274 IDR NPeak rep1_vs_rep2 -6589520162127805602->7086634030335194274 7086634030335194274->1564229285727050142 4661827418080522029 Overlap Peak rep1_vs_rep2 -6353234146732660838->4661827418080522029 4661827418080522029->-1230632020070391338 610434117526763261 Overlap Peak optimal -1230632020070391338->610434117526763261 -5609433119339281156 Overlap reproducibility -1230632020070391338->-5609433119339281156 5162385021376325616 IDR Peak optimal 1564229285727050142->5162385021376325616 4330013139883132977 IDR reproducibility 1564229285727050142->4330013139883132977 1438639911847163696 Overlap Peak ppr -2261086337724294194->1438639911847163696 1438639911847163696->-1230632020070391338 172810041651726173 JSD Plot 2460565415393570903->172810041651726173

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF139YAL.crop_101-2bp.nodup_x_ctl.pooled.257M.fc.signal.bigwig?Expires=1601331207&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=XqJ7SoWLLihwJM6MqQntRWn1B47Up7JNrBsDJIuedzvifAbxh99pWFiV1OGF6GlK%2BEV7i6olzFfyFVljBZkaPUOBkKxWrRCChLlSnWz2JqTcOrhI2DfOrK7mqnklDupwVQdW2a01Hnud%2FrUSF%2F%2B%2FHktC59oWm47LNau9ogAmnu6BneP%2FjQZhFcXPAuxA7FBEYJ73vhEIAr4ALeW7N%2FRpJWDELyUGtYCyixUH0Mp%2B8n2LbX%2FLE6IeJr3A%2Fd%2FX5zWKwoZ4vurzAzHV8VSL6bCIDjRLOV1T10ZfOsYdLO9FELnhZv5dhidoSsrwBQsba0V5Av2GvRDLQDlFLMQNvdCAAQ%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/0f5c2075-408e-4364-96f0-78aca66832ed/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.482M.pval.signal.bigwig?Expires=1601331208&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=kD869Ghkn0Zr2te6GLC2dX4Xt0yKMMakqIL0YCasM4hAVmyNJRleqWMvx5m0BHXizOCFr5JxTKpCQvbDdz%2F9N%2FwbEQJ%2FajZBz8JqRVWON7UjlNnG94hjpb0laCGyMSHupPoycqkWwxnVzAsCf2aPjdFuAhWOq4JwaiGc%2FdqkN5pz1DblA6Q8qE%2F%2BTE3zMJWxx0Q4Xyxs7L9gUzhIRic9Fo1S%2Bc4h0bqw3WVo15vZH%2FpOFDaWpbHETAU9o9zEuZY1nNvXIfsXhSB6XK12l0jpcJfAqEg9v%2BMR2f9pKNxxbzh%2FUofE%2BlFuOOEct8lKnWn%2ByIdyDjh74Ze6gsY6OBEeGQ%3D%3D"
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