File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF962YIK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF962YIK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF962YIK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF962YIK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF962YIK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF574OQO.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF574OQO.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF574OQO.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF574OQO.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF574OQO.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.626M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.626M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.626M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF962YIK.crop_101-2bp.nodup.pr1_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF962YIK.crop_101-2bp.nodup.pr1_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF962YIK.crop_101-2bp.nodup.pr1_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF962YIK.crop_101-2bp.nodup.pr1_x_ctl.pooled.304M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF962YIK.crop_101-2bp.nodup.pr2_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF962YIK.crop_101-2bp.nodup.pr2_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF962YIK.crop_101-2bp.nodup.pr2_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF962YIK.crop_101-2bp.nodup.pr2_x_ctl.pooled.304M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF574OQO.crop_101-2bp.nodup.pr1_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF574OQO.crop_101-2bp.nodup.pr1_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF574OQO.crop_101-2bp.nodup.pr1_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF574OQO.crop_101-2bp.nodup.pr1_x_ctl.pooled.322M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF574OQO.crop_101-2bp.nodup.pr2_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF574OQO.crop_101-2bp.nodup.pr2_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF574OQO.crop_101-2bp.nodup.pr2_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF574OQO.crop_101-2bp.nodup.pr2_x_ctl.pooled.322M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.626M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF962YIK.crop_101-2bp.nodup.pr1_x_ctl.pooled.304M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF962YIK.crop_101-2bp.nodup.pr2_x_ctl.pooled.304M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF962YIK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF962YIK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF962YIK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF962YIK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF962YIK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF962YIK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF574OQO.crop_101-2bp.nodup.pr1_x_ctl.pooled.322M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF574OQO.crop_101-2bp.nodup.pr2_x_ctl.pooled.322M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF574OQO.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF574OQO.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF574OQO.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF574OQO.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF574OQO.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF574OQO.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF962YIK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/9b54d520-94fe-458b-badf-a7b0874bcbc6/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.626M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.626M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF574OQO.crop_101-2bp.nodup_x_ctl.pooled.322M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 438283455895248312 chip.macs2_signal_track_pooled -4828628039499136111 BW FC 438283455895248312->-4828628039499136111 -4166716879830212773 BW p-val 438283455895248312->-4166716879830212773 -9005521789183972866 chip.call_peak_pooled 1917951719783847169 Peak (bfilt) -9005521789183972866->1917951719783847169 -3127492411804739506 Peak -9005521789183972866->-3127492411804739506 7389705606846376141 chip.idr_ppr -3127492411804739506->7389705606846376141 -5226736910397048888 chip.idr -3127492411804739506->-5226736910397048888 -7407718462937411568 chip.overlap -3127492411804739506->-7407718462937411568 6171394591065384777 chip.overlap_ppr -3127492411804739506->6171394591065384777 5282558236853808236 chip.pool_ta -5304520656579764935 TAG-ALIGN 5282558236853808236->-5304520656579764935 -5304520656579764935->438283455895248312 -5304520656579764935->-9005521789183972866 -5304520656579764935->7389705606846376141 -5304520656579764935->-5226736910397048888 -5304520656579764935->-7407718462937411568 -5304520656579764935->6171394591065384777 4981194776560766350 chip.call_peak 9076721890168983142 Peak (bfilt) 4981194776560766350->9076721890168983142 -7912265013175833009 Peak 4981194776560766350->-7912265013175833009 -7912265013175833009->-5226736910397048888 -7912265013175833009->-7407718462937411568 -3871241133519482569 chip.reproducibility_overlap -7912265013175833009->-3871241133519482569 -8097488297182406841 chip.reproducibility_idr -7912265013175833009->-8097488297182406841 -8977204980909829088 chip.bam2ta -7086598591802740887 TAG-ALIGN -8977204980909829088->-7086598591802740887 -7086598591802740887->5282558236853808236 -7086598591802740887->4981194776560766350 345756057840550285 chip.macs2_signal_track -7086598591802740887->345756057840550285 -7086598591802740887->7389705606846376141 -7086598591802740887->-3871241133519482569 -7086598591802740887->-8097488297182406841 -7086598591802740887->6171394591065384777 8803916219890185261 chip.filter 5119109478448946552 SAMstats QC 8803916219890185261->5119109478448946552 -6078383551069789607 Filt/deduped BAM 8803916219890185261->-6078383551069789607 -7323562748847892303 LibCmplx QC 8803916219890185261->-7323562748847892303 -6078383551069789607->-8977204980909829088 2390402533999301201 chip.jsd -6078383551069789607->2390402533999301201 -3994503685450228035 chip.align 3434873657267411580 SAMstats QC -3994503685450228035->3434873657267411580 5803166557452614038 BAM -3994503685450228035->5803166557452614038 5803166557452614038->8803916219890185261 5606427561600806292 chip.xcor 2256736832599830125 XCOR Plot 5606427561600806292->2256736832599830125 1019581697366174247 BW FC 345756057840550285->1019581697366174247 -2517969930128384279 BW p-val 345756057840550285->-2517969930128384279 1949832549654213257 FASTQ R1 (1) 1949832549654213257->-3994503685450228035 1949832549654213257->5606427561600806292 6929402589590915196 FASTQ R2 (1) 6929402589590915196->-3994503685450228035 -997284818620835706 chip.call_peak 1118009333815381398 Peak (bfilt) -997284818620835706->1118009333815381398 1602477577307190970 Peak -997284818620835706->1602477577307190970 1602477577307190970->-5226736910397048888 1602477577307190970->-7407718462937411568 1602477577307190970->-3871241133519482569 1602477577307190970->-8097488297182406841 710564536783386554 chip.bam2ta -8071331863949113229 TAG-ALIGN 710564536783386554->-8071331863949113229 -8071331863949113229->5282558236853808236 -8071331863949113229->-997284818620835706 960961083506021551 chip.macs2_signal_track -8071331863949113229->960961083506021551 -8071331863949113229->7389705606846376141 -8071331863949113229->-3871241133519482569 -8071331863949113229->-8097488297182406841 -8071331863949113229->6171394591065384777 -7606137693715369989 chip.filter -8241883289308587526 SAMstats QC -7606137693715369989->-8241883289308587526 -1836491858324459966 Filt/deduped BAM -7606137693715369989->-1836491858324459966 -363923440855753359 LibCmplx QC -7606137693715369989->-363923440855753359 -1836491858324459966->710564536783386554 -1836491858324459966->2390402533999301201 -7538028990328003885 chip.align 1615275443742422175 SAMstats QC -7538028990328003885->1615275443742422175 8055673345710037627 BAM -7538028990328003885->8055673345710037627 8055673345710037627->-7606137693715369989 -542734592363395861 chip.xcor -6052308814902788146 XCOR Plot -542734592363395861->-6052308814902788146 -2987689895660274622 BW FC 960961083506021551->-2987689895660274622 871866371129555603 BW p-val 960961083506021551->871866371129555603 -8234831351412663570 FASTQ R1 (1) -8234831351412663570->-7538028990328003885 -8234831351412663570->-542734592363395861 551755795985558961 FASTQ R2 (1) 551755795985558961->-7538028990328003885 1504873153198913613 chip.pool_ta_ctl -4268805913710029156 TAG-ALIGN 1504873153198913613->-4268805913710029156 -4268805913710029156->438283455895248312 -4268805913710029156->-9005521789183972866 -4268805913710029156->4981194776560766350 -4268805913710029156->345756057840550285 -4268805913710029156->-997284818620835706 -4268805913710029156->960961083506021551 -4268805913710029156->7389705606846376141 -4268805913710029156->-3871241133519482569 -4268805913710029156->-8097488297182406841 -4268805913710029156->6171394591065384777 224207107601015228 chip.bam2ta_ctl 1853020048700944788 TAG-ALIGN 224207107601015228->1853020048700944788 1853020048700944788->1504873153198913613 -5089946421651380385 Filt/deduped BAM -5089946421651380385->224207107601015228 -5089946421651380385->2390402533999301201 3124953365433574876 chip.bam2ta_ctl -4905982733569394641 TAG-ALIGN 3124953365433574876->-4905982733569394641 -4905982733569394641->1504873153198913613 -2456333599502570439 Filt/deduped BAM -2456333599502570439->3124953365433574876 -2456333599502570439->2390402533999301201 -7900398498191079547 chip.bam2ta_ctl -8357719690595767295 TAG-ALIGN -7900398498191079547->-8357719690595767295 -8357719690595767295->1504873153198913613 -7369619889131898253 Filt/deduped BAM -7369619889131898253->-7900398498191079547 -7369619889131898253->2390402533999301201 2641555645579150640 chip.bam2ta_ctl 5218983052901706990 TAG-ALIGN 2641555645579150640->5218983052901706990 5218983052901706990->1504873153198913613 9054871364236620052 Filt/deduped BAM 9054871364236620052->2641555645579150640 9054871364236620052->2390402533999301201 -1065449500703863745 chip.bam2ta_ctl -6788266594394587560 TAG-ALIGN -1065449500703863745->-6788266594394587560 -6788266594394587560->1504873153198913613 -8701840396404788136 Filt/deduped BAM -8701840396404788136->-1065449500703863745 -8701840396404788136->2390402533999301201 -2242855134429888062 chip.bam2ta_ctl -766782109642641323 TAG-ALIGN -2242855134429888062->-766782109642641323 -766782109642641323->1504873153198913613 -5643332527130407327 Filt/deduped BAM -5643332527130407327->-2242855134429888062 -5643332527130407327->2390402533999301201 -438889227162942060 chip.bam2ta_ctl -4276554016233899784 TAG-ALIGN -438889227162942060->-4276554016233899784 -4276554016233899784->1504873153198913613 -7734805713047157787 Filt/deduped BAM -7734805713047157787->-438889227162942060 -7734805713047157787->2390402533999301201 -818739505537189950 chip.bam2ta_ctl 4304374733396433094 TAG-ALIGN -818739505537189950->4304374733396433094 4304374733396433094->1504873153198913613 -8950066553957031430 Filt/deduped BAM -8950066553957031430->-818739505537189950 -8950066553957031430->2390402533999301201 -8010598709334943640 chip.bam2ta_ctl -4881478478913215276 TAG-ALIGN -8010598709334943640->-4881478478913215276 -4881478478913215276->1504873153198913613 6522431573050358107 Filt/deduped BAM 6522431573050358107->-8010598709334943640 6522431573050358107->2390402533999301201 527479450828755637 chip.bam2ta_ctl 1056090756879900561 TAG-ALIGN 527479450828755637->1056090756879900561 1056090756879900561->1504873153198913613 -4817406803135057886 Filt/deduped BAM -4817406803135057886->527479450828755637 -4817406803135057886->2390402533999301201 -7048175863106279661 chip.bam2ta_ctl 8516823620291442639 TAG-ALIGN -7048175863106279661->8516823620291442639 8516823620291442639->1504873153198913613 7134127324579653183 Filt/deduped BAM 7134127324579653183->-7048175863106279661 7134127324579653183->2390402533999301201 -4242447523020071860 chip.bam2ta_ctl 227755134047017896 TAG-ALIGN -4242447523020071860->227755134047017896 227755134047017896->1504873153198913613 -14737410718602546 Filt/deduped BAM -14737410718602546->-4242447523020071860 -14737410718602546->2390402533999301201 -1455736881445010203 chip.bam2ta_ctl -5095257661101873881 TAG-ALIGN -1455736881445010203->-5095257661101873881 -5095257661101873881->1504873153198913613 -3033171320464759089 Filt/deduped BAM -3033171320464759089->-1455736881445010203 -3033171320464759089->2390402533999301201 -3030904208576951019 chip.bam2ta_ctl -4938001828592265101 TAG-ALIGN -3030904208576951019->-4938001828592265101 -4938001828592265101->1504873153198913613 3610198108869807012 Filt/deduped BAM 3610198108869807012->-3030904208576951019 3610198108869807012->2390402533999301201 -1145615368703669928 chip.bam2ta_ctl 1141364724675193249 TAG-ALIGN -1145615368703669928->1141364724675193249 1141364724675193249->1504873153198913613 -4049318589624261614 Filt/deduped BAM -4049318589624261614->-1145615368703669928 -4049318589624261614->2390402533999301201 1189321921613265841 chip.bam2ta_ctl -6450419503171141463 TAG-ALIGN 1189321921613265841->-6450419503171141463 -6450419503171141463->1504873153198913613 2867070453875478076 Filt/deduped BAM 2867070453875478076->1189321921613265841 2867070453875478076->2390402533999301201 1234653072369006123 chip.bam2ta_ctl -1404885963112771642 TAG-ALIGN 1234653072369006123->-1404885963112771642 -1404885963112771642->1504873153198913613 -6800359553820099658 Filt/deduped BAM -6800359553820099658->1234653072369006123 -6800359553820099658->2390402533999301201 -8033375615210048206 chip.bam2ta_ctl 4104033010580210294 TAG-ALIGN -8033375615210048206->4104033010580210294 4104033010580210294->1504873153198913613 -6352140350919027424 Filt/deduped BAM -6352140350919027424->-8033375615210048206 -6352140350919027424->2390402533999301201 2874598281947115963 chip.bam2ta_ctl -638250577500551269 TAG-ALIGN 2874598281947115963->-638250577500551269 -638250577500551269->1504873153198913613 993392148703419579 Filt/deduped BAM 993392148703419579->2874598281947115963 993392148703419579->2390402533999301201 5530843947371439379 chip.bam2ta_ctl -3678233247659078549 TAG-ALIGN 5530843947371439379->-3678233247659078549 -3678233247659078549->1504873153198913613 -288741685251909228 Filt/deduped BAM -288741685251909228->5530843947371439379 -288741685251909228->2390402533999301201 -4038184359665787570 chip.bam2ta_ctl -4289111524187994037 TAG-ALIGN -4038184359665787570->-4289111524187994037 -4289111524187994037->1504873153198913613 -6487154275271130800 Filt/deduped BAM -6487154275271130800->-4038184359665787570 -6487154275271130800->2390402533999301201 5022060605210522772 chip.bam2ta_ctl -1041961567056192530 TAG-ALIGN 5022060605210522772->-1041961567056192530 -1041961567056192530->1504873153198913613 -1910027668702589398 Filt/deduped BAM -1910027668702589398->5022060605210522772 -1910027668702589398->2390402533999301201 7177859281568298611 chip.bam2ta_ctl 7553073895156843486 TAG-ALIGN 7177859281568298611->7553073895156843486 7553073895156843486->1504873153198913613 -7141266906592590188 Filt/deduped BAM -7141266906592590188->7177859281568298611 -7141266906592590188->2390402533999301201 -1055738610822924853 chip.bam2ta_ctl -8711046007833233630 TAG-ALIGN -1055738610822924853->-8711046007833233630 -8711046007833233630->1504873153198913613 -5020390292645275557 Filt/deduped BAM -5020390292645275557->-1055738610822924853 -5020390292645275557->2390402533999301201 5074757738049521238 IDR Plot ppr 7389705606846376141->5074757738049521238 5978323463469274502 IDR Peak ppr 7389705606846376141->5978323463469274502 5978323463469274502->-8097488297182406841 7574331852717533337 IDR Plot rep1_vs_rep2 -5226736910397048888->7574331852717533337 7340371142522244011 IDR NPeak rep1_vs_rep2 -5226736910397048888->7340371142522244011 7340371142522244011->-8097488297182406841 -7591199508478179058 Overlap Peak rep1_vs_rep2 -7407718462937411568->-7591199508478179058 -7591199508478179058->-3871241133519482569 -3558419560305718714 Overlap Peak optimal -3871241133519482569->-3558419560305718714 -2740943151455030219 Overlap reproducibility -3871241133519482569->-2740943151455030219 -8375304515120390665 IDR Peak optimal -8097488297182406841->-8375304515120390665 3039369430454620268 IDR reproducibility -8097488297182406841->3039369430454620268 726041545763719383 Overlap Peak ppr 6171394591065384777->726041545763719383 726041545763719383->-3871241133519482569 1052597517929937650 JSD Plot 2390402533999301201->1052597517929937650

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF962YIK.crop_101-2bp.nodup_x_ctl.pooled.304M.fc.signal.bigwig?Expires=1601333691&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=Xig13bhyCRYtrWuaRTgl8P%2BqNeKqB3CqWIlNcmwe%2FKVSe87Axu4V8in2u4qwngXYg4fjTlY%2BFzOJgRyC5p2HcAmaUVe5uo90ffQME2LVe1u5ZlOsGr0A6ETufSv3pKbfVCsZgbqLK0SJ8aCPbvh1YghgO%2FdgWuIF%2B%2BOWtUZ8vud5%2FwSMQgyBC3bSoiFNSZD6osl221Dp7dIYz40LXrHaBWv1kRVsS9OM7MYU2SgZYzleSZ899pfJyu6EBxFrZ07UHj547kx9naMaSfxfYRHiYcw9N%2BgoAwu%2FGsu10Ox7Ug4VLsuu92hQfiD6IPs00xkp%2FFWmAWQMZpG2V0jHqgqIAw%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/d1f07dd9-a109-4437-b393-2a7cf006a513/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.626M.pval.signal.bigwig?Expires=1601333692&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=M1KSKpWnkhDaEw7%2FJTT7p6Il70kWnnFSfqykl5M5Ot%2FEz6t00V7PrlHYe7Q1uVp4XqvuAO51MdTDjWWNgu84dhykBJXGjInWVlKG1PtHHQK65a6XAobM0ETSdBGIvVVMQwBoV8uljNf%2BGGc33Y110c48Qyxmn7DpHyPfQ1TinwaxDYcPC%2F7reAi%2FftvATHDczX%2FVmrUx7PWqHWCoQyumoVtyhejQeYKxzadCt5FjTHMe8up0snf0GwErA6xVO1YptqfiNIC6e0U9kdv%2BvGdrLeR9YQQe2%2B%2Byf8qz12xl1%2B0AFqwA7zKsTSLGrcVLj63%2BipzdkV06EwgT5bWWgQnI8A%3D%3D"
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