File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF862OIP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF862OIP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF862OIP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF862OIP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF862OIP.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF120XAX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF120XAX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF120XAX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF120XAX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF120XAX.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.587M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.587M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.587M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.587M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.587M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.587M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.587M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF862OIP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF862OIP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF862OIP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF862OIP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF862OIP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF862OIP.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF120XAX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF120XAX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF120XAX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF120XAX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF120XAX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF120XAX.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF862OIP.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.587M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.587M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -8686471926686977786 chip.macs2_signal_track_pooled 6433316485682443149 BW FC -8686471926686977786->6433316485682443149 -2096090898198205998 BW p-val -8686471926686977786->-2096090898198205998 -6392091335584802899 chip.call_peak_pooled -6339828029809499718 Peak (bfilt) -6392091335584802899->-6339828029809499718 -3714720970994849316 Peak -6392091335584802899->-3714720970994849316 4075651150483370472 chip.idr_ppr -3714720970994849316->4075651150483370472 4312344279611979897 chip.idr -3714720970994849316->4312344279611979897 7569941605494172626 chip.overlap -3714720970994849316->7569941605494172626 -5154950423180959783 chip.overlap_ppr -3714720970994849316->-5154950423180959783 -6920069694827904838 chip.pool_ta 6038012113127165683 TAG-ALIGN -6920069694827904838->6038012113127165683 6038012113127165683->-8686471926686977786 6038012113127165683->-6392091335584802899 6038012113127165683->4075651150483370472 6038012113127165683->4312344279611979897 6038012113127165683->7569941605494172626 6038012113127165683->-5154950423180959783 611079958392539083 chip.call_peak -7834556026343051792 Peak (bfilt) 611079958392539083->-7834556026343051792 2852815136238586324 Peak 611079958392539083->2852815136238586324 2852815136238586324->4312344279611979897 2852815136238586324->7569941605494172626 2682685736883438777 chip.reproducibility_overlap 2852815136238586324->2682685736883438777 -6717532576266163087 chip.reproducibility_idr 2852815136238586324->-6717532576266163087 9081280130369570818 chip.bam2ta -5932816751007564546 TAG-ALIGN 9081280130369570818->-5932816751007564546 -5932816751007564546->-6920069694827904838 -5932816751007564546->611079958392539083 -7186790199041282784 chip.macs2_signal_track -5932816751007564546->-7186790199041282784 -5932816751007564546->4075651150483370472 -5932816751007564546->2682685736883438777 -5932816751007564546->-6717532576266163087 -5932816751007564546->-5154950423180959783 126179105532818565 chip.filter 474380338000161829 SAMstats QC 126179105532818565->474380338000161829 -5897889461228078135 Filt/deduped BAM 126179105532818565->-5897889461228078135 5966714054038013958 LibCmplx QC 126179105532818565->5966714054038013958 -5897889461228078135->9081280130369570818 8311888055831777669 chip.jsd -5897889461228078135->8311888055831777669 6548933739894954302 chip.align -2961638678493944626 SAMstats QC 6548933739894954302->-2961638678493944626 8707793230722169314 BAM 6548933739894954302->8707793230722169314 8707793230722169314->126179105532818565 1762417768762084077 chip.xcor 3578027535051076334 XCOR Plot 1762417768762084077->3578027535051076334 8703162487513211140 BW FC -7186790199041282784->8703162487513211140 4352881177618045637 BW p-val -7186790199041282784->4352881177618045637 -5364431594604798552 FASTQ R1 (1) -5364431594604798552->6548933739894954302 -5364431594604798552->1762417768762084077 8951027194465597957 FASTQ R2 (1) 8951027194465597957->6548933739894954302 5326944464634750439 chip.call_peak 709517411094961795 Peak (bfilt) 5326944464634750439->709517411094961795 3543270207674578009 Peak 5326944464634750439->3543270207674578009 3543270207674578009->4312344279611979897 3543270207674578009->7569941605494172626 3543270207674578009->2682685736883438777 3543270207674578009->-6717532576266163087 1524865525056700154 chip.bam2ta -4660135516895903946 TAG-ALIGN 1524865525056700154->-4660135516895903946 -4660135516895903946->-6920069694827904838 -4660135516895903946->5326944464634750439 3706629644009549772 chip.macs2_signal_track -4660135516895903946->3706629644009549772 -4660135516895903946->4075651150483370472 -4660135516895903946->2682685736883438777 -4660135516895903946->-6717532576266163087 -4660135516895903946->-5154950423180959783 -5488297802025178501 chip.filter 4441353711043370773 SAMstats QC -5488297802025178501->4441353711043370773 8494429014492466550 Filt/deduped BAM -5488297802025178501->8494429014492466550 170510516841869303 LibCmplx QC -5488297802025178501->170510516841869303 8494429014492466550->1524865525056700154 8494429014492466550->8311888055831777669 -4491172608622297044 chip.align 2727769573043401337 SAMstats QC -4491172608622297044->2727769573043401337 -8832301081997670444 BAM -4491172608622297044->-8832301081997670444 -8832301081997670444->-5488297802025178501 -1166627294654564499 chip.xcor 4528663150121936475 XCOR Plot -1166627294654564499->4528663150121936475 -4739721694793595371 BW FC 3706629644009549772->-4739721694793595371 -9061163899190125980 BW p-val 3706629644009549772->-9061163899190125980 -5735358110393954458 FASTQ R1 (1) -5735358110393954458->-4491172608622297044 -5735358110393954458->-1166627294654564499 4630711070558966167 FASTQ R2 (1) 4630711070558966167->-4491172608622297044 -3117514237043043886 chip.pool_ta_ctl 1046860515001738821 TAG-ALIGN -3117514237043043886->1046860515001738821 1046860515001738821->-8686471926686977786 1046860515001738821->-6392091335584802899 1046860515001738821->611079958392539083 1046860515001738821->-7186790199041282784 1046860515001738821->5326944464634750439 1046860515001738821->3706629644009549772 1046860515001738821->4075651150483370472 1046860515001738821->2682685736883438777 1046860515001738821->-6717532576266163087 1046860515001738821->-5154950423180959783 7865753419242028591 chip.bam2ta_ctl -7192501413865344563 TAG-ALIGN 7865753419242028591->-7192501413865344563 -7192501413865344563->-3117514237043043886 3782030851534283508 Filt/deduped BAM 3782030851534283508->7865753419242028591 3782030851534283508->8311888055831777669 5907675917779523606 chip.bam2ta_ctl 492646643460722830 TAG-ALIGN 5907675917779523606->492646643460722830 492646643460722830->-3117514237043043886 7557458903711911639 Filt/deduped BAM 7557458903711911639->5907675917779523606 7557458903711911639->8311888055831777669 4342063991091653471 chip.bam2ta_ctl -2520010674366551613 TAG-ALIGN 4342063991091653471->-2520010674366551613 -2520010674366551613->-3117514237043043886 4105405516042568920 Filt/deduped BAM 4105405516042568920->4342063991091653471 4105405516042568920->8311888055831777669 -6822792811968926439 chip.bam2ta_ctl -276938258266183519 TAG-ALIGN -6822792811968926439->-276938258266183519 -276938258266183519->-3117514237043043886 8813189047389343447 Filt/deduped BAM 8813189047389343447->-6822792811968926439 8813189047389343447->8311888055831777669 -5964926716400899279 chip.bam2ta_ctl -4720018497188350699 TAG-ALIGN -5964926716400899279->-4720018497188350699 -4720018497188350699->-3117514237043043886 -2362080343877155670 Filt/deduped BAM -2362080343877155670->-5964926716400899279 -2362080343877155670->8311888055831777669 504329035586143509 chip.bam2ta_ctl 7091171629919690061 TAG-ALIGN 504329035586143509->7091171629919690061 7091171629919690061->-3117514237043043886 -1347892446048709075 Filt/deduped BAM -1347892446048709075->504329035586143509 -1347892446048709075->8311888055831777669 1412688851004389959 chip.bam2ta_ctl -6883737046920128285 TAG-ALIGN 1412688851004389959->-6883737046920128285 -6883737046920128285->-3117514237043043886 2732370210276737724 Filt/deduped BAM 2732370210276737724->1412688851004389959 2732370210276737724->8311888055831777669 296145919379281190 chip.bam2ta_ctl 5205172441893496726 TAG-ALIGN 296145919379281190->5205172441893496726 5205172441893496726->-3117514237043043886 -6205586740271812939 Filt/deduped BAM -6205586740271812939->296145919379281190 -6205586740271812939->8311888055831777669 7421823794643109738 chip.bam2ta_ctl 5670573137858438318 TAG-ALIGN 7421823794643109738->5670573137858438318 5670573137858438318->-3117514237043043886 -6635681189513601936 Filt/deduped BAM -6635681189513601936->7421823794643109738 -6635681189513601936->8311888055831777669 6947416336262469112 chip.bam2ta_ctl 6655370164952482929 TAG-ALIGN 6947416336262469112->6655370164952482929 6655370164952482929->-3117514237043043886 -1842856259168436084 Filt/deduped BAM -1842856259168436084->6947416336262469112 -1842856259168436084->8311888055831777669 -8217633358059211586 chip.bam2ta_ctl 4716666636568914510 TAG-ALIGN -8217633358059211586->4716666636568914510 4716666636568914510->-3117514237043043886 -1862864879746565546 Filt/deduped BAM -1862864879746565546->-8217633358059211586 -1862864879746565546->8311888055831777669 4536872470885543568 chip.bam2ta_ctl 707898379216981724 TAG-ALIGN 4536872470885543568->707898379216981724 707898379216981724->-3117514237043043886 1752579020620112517 Filt/deduped BAM 1752579020620112517->4536872470885543568 1752579020620112517->8311888055831777669 5984270405688639573 chip.bam2ta_ctl -1417121142593377213 TAG-ALIGN 5984270405688639573->-1417121142593377213 -1417121142593377213->-3117514237043043886 2652174391046958320 Filt/deduped BAM 2652174391046958320->5984270405688639573 2652174391046958320->8311888055831777669 4883725963916653555 chip.bam2ta_ctl -3550922474528895120 TAG-ALIGN 4883725963916653555->-3550922474528895120 -3550922474528895120->-3117514237043043886 -595076622721858284 Filt/deduped BAM -595076622721858284->4883725963916653555 -595076622721858284->8311888055831777669 -1386936205918796944 chip.bam2ta_ctl -8991340597778899658 TAG-ALIGN -1386936205918796944->-8991340597778899658 -8991340597778899658->-3117514237043043886 -4491482888080981308 Filt/deduped BAM -4491482888080981308->-1386936205918796944 -4491482888080981308->8311888055831777669 761580657980306253 chip.bam2ta_ctl -3622624788947485322 TAG-ALIGN 761580657980306253->-3622624788947485322 -3622624788947485322->-3117514237043043886 -9045025818920024854 Filt/deduped BAM -9045025818920024854->761580657980306253 -9045025818920024854->8311888055831777669 6547442393412171990 chip.bam2ta_ctl 8641971331197496542 TAG-ALIGN 6547442393412171990->8641971331197496542 8641971331197496542->-3117514237043043886 -5228543209555490364 Filt/deduped BAM -5228543209555490364->6547442393412171990 -5228543209555490364->8311888055831777669 4172346289308358828 chip.bam2ta_ctl -6110132877455100869 TAG-ALIGN 4172346289308358828->-6110132877455100869 -6110132877455100869->-3117514237043043886 -6374886757208671590 Filt/deduped BAM -6374886757208671590->4172346289308358828 -6374886757208671590->8311888055831777669 2911868071437711711 chip.bam2ta_ctl -8424577708010455036 TAG-ALIGN 2911868071437711711->-8424577708010455036 -8424577708010455036->-3117514237043043886 -4576225427102080059 Filt/deduped BAM -4576225427102080059->2911868071437711711 -4576225427102080059->8311888055831777669 8207812844821617867 chip.bam2ta_ctl 848963339882905046 TAG-ALIGN 8207812844821617867->848963339882905046 848963339882905046->-3117514237043043886 -8705894370066663172 Filt/deduped BAM -8705894370066663172->8207812844821617867 -8705894370066663172->8311888055831777669 -6940187109565780735 chip.bam2ta_ctl -7976264125129667204 TAG-ALIGN -6940187109565780735->-7976264125129667204 -7976264125129667204->-3117514237043043886 -6199240218081126639 Filt/deduped BAM -6199240218081126639->-6940187109565780735 -6199240218081126639->8311888055831777669 -3070093763194403575 chip.bam2ta_ctl -2669631867862428206 TAG-ALIGN -3070093763194403575->-2669631867862428206 -2669631867862428206->-3117514237043043886 -4449228939913163984 Filt/deduped BAM -4449228939913163984->-3070093763194403575 -4449228939913163984->8311888055831777669 4400960877714724885 chip.bam2ta_ctl 2637137938581526363 TAG-ALIGN 4400960877714724885->2637137938581526363 2637137938581526363->-3117514237043043886 2147611016000610586 Filt/deduped BAM 2147611016000610586->4400960877714724885 2147611016000610586->8311888055831777669 3895506578361791480 chip.bam2ta_ctl 1511019805326650720 TAG-ALIGN 3895506578361791480->1511019805326650720 1511019805326650720->-3117514237043043886 -1801565288899668851 Filt/deduped BAM -1801565288899668851->3895506578361791480 -1801565288899668851->8311888055831777669 1160601568554164774 IDR Plot ppr 4075651150483370472->1160601568554164774 -4303943524366959738 IDR Peak ppr 4075651150483370472->-4303943524366959738 -4303943524366959738->-6717532576266163087 3818420599075786616 IDR Plot rep1_vs_rep2 4312344279611979897->3818420599075786616 -922684037857016634 IDR NPeak rep1_vs_rep2 4312344279611979897->-922684037857016634 -922684037857016634->-6717532576266163087 -6996495968372625589 Overlap Peak rep1_vs_rep2 7569941605494172626->-6996495968372625589 -6996495968372625589->2682685736883438777 2003975894997811023 Overlap Peak optimal 2682685736883438777->2003975894997811023 6534339723057169929 Overlap reproducibility 2682685736883438777->6534339723057169929 -8079615408781058847 IDR Peak optimal -6717532576266163087->-8079615408781058847 5361627010154976642 IDR reproducibility -6717532576266163087->5361627010154976642 5860257502186202828 Overlap Peak ppr -5154950423180959783->5860257502186202828 5860257502186202828->2682685736883438777 -7909059938027175629 JSD Plot 8311888055831777669->-7909059938027175629

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.587M.pval.signal.bigwig?Expires=1601338933&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=q8rhewc8mU1GSOALsG5RsJbeMdwcJPQ2NiKQjkwSaIH9yN9wr1DQbiAmjSh9y3g1NUY0TJdEexeARokae%2F0JNwMRKFMEev1rE2KieCYeCG0oTbLzqOr%2FyJVYtHQeKdfOIOkUNR4ZBKKL5qUt7tXkV391bzZij4ezKAqo%2BMCNMmMiJVLdwptcjIikBM4AqrVtjyTLdL2qqBCORRUlqgQjjuI7zRUMw3jJiIpbsNCgQ%2Bw4wK7H2Crx22f8%2FEJP3xSXs%2F5jjlomtuGDN2x2cWVgzv290fj91L8eYh%2F33TdNySalAT0p4%2Fe42VBV7KRnb5WJHkMiIjB4ObC10QxpRySdVA%3D%3D"
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