File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF862OIP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF862OIP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF862OIP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF862OIP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF862OIP.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF120XAX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF120XAX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF120XAX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF120XAX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF120XAX.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.587M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF862OIP.crop_101-2bp.nodup.pr1_x_ctl.pooled.240M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF862OIP.crop_101-2bp.nodup.pr2_x_ctl.pooled.240M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF862OIP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF862OIP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF862OIP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF862OIP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF862OIP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF862OIP.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF120XAX.crop_101-2bp.nodup.pr1_x_ctl.pooled.347M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF120XAX.crop_101-2bp.nodup.pr2_x_ctl.pooled.347M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF120XAX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF120XAX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF120XAX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF120XAX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF120XAX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/840aa27a-becd-43a2-9f5e-54fd1b453e36/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF120XAX.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF862OIP.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/0cdc6b7d-5541-4268-9829-5445298e5c2a/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.587M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.587M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF862OIP.crop_101-2bp.nodup_x_ctl.pooled.240M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/87e13a8f-d2a4-4252-9681-b744d35d7fd4/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF120XAX.crop_101-2bp.nodup_x_ctl.pooled.347M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 4120818154657414128 chip.macs2_signal_track_pooled 6134097223583900463 BW FC 4120818154657414128->6134097223583900463 -6953846971190521540 BW p-val 4120818154657414128->-6953846971190521540 950249983198782538 chip.call_peak_pooled -636979009367507447 Peak (bfilt) 950249983198782538->-636979009367507447 1751636623578457432 Peak 950249983198782538->1751636623578457432 -6254527483659863929 chip.idr_ppr 1751636623578457432->-6254527483659863929 -346376573317022343 chip.idr 1751636623578457432->-346376573317022343 1022455062285789776 chip.overlap 1751636623578457432->1022455062285789776 7485123755792450217 chip.overlap_ppr 1751636623578457432->7485123755792450217 8538862705113168294 chip.pool_ta -9210961463516910145 TAG-ALIGN 8538862705113168294->-9210961463516910145 -9210961463516910145->4120818154657414128 -9210961463516910145->950249983198782538 -9210961463516910145->-6254527483659863929 -9210961463516910145->-346376573317022343 -9210961463516910145->1022455062285789776 -9210961463516910145->7485123755792450217 -3358290443262735885 chip.call_peak -1105887865805748819 Peak (bfilt) -3358290443262735885->-1105887865805748819 -4462497514013153646 Peak -3358290443262735885->-4462497514013153646 -4462497514013153646->-346376573317022343 -4462497514013153646->1022455062285789776 -3709354270606758171 chip.reproducibility_overlap -4462497514013153646->-3709354270606758171 6276769228090411890 chip.reproducibility_idr -4462497514013153646->6276769228090411890 4479302120803340817 chip.bam2ta 8092007974652880005 TAG-ALIGN 4479302120803340817->8092007974652880005 8092007974652880005->8538862705113168294 8092007974652880005->-3358290443262735885 8228895963180682122 chip.macs2_signal_track 8092007974652880005->8228895963180682122 8092007974652880005->-6254527483659863929 8092007974652880005->-3709354270606758171 8092007974652880005->6276769228090411890 8092007974652880005->7485123755792450217 8855030248638036402 chip.filter 2906746826544948371 SAMstats QC 8855030248638036402->2906746826544948371 -754573409823292723 Filt/deduped BAM 8855030248638036402->-754573409823292723 -913233819534184983 LibCmplx QC 8855030248638036402->-913233819534184983 -754573409823292723->4479302120803340817 1002663059188315451 chip.jsd -754573409823292723->1002663059188315451 517381928010527628 chip.align -1298298272735577512 SAMstats QC 517381928010527628->-1298298272735577512 -6699765444388684681 BAM 517381928010527628->-6699765444388684681 -6699765444388684681->8855030248638036402 -1618204866831484862 chip.xcor 4013074485559961890 XCOR Plot -1618204866831484862->4013074485559961890 1360651675871443712 BW FC 8228895963180682122->1360651675871443712 341176167320573486 BW p-val 8228895963180682122->341176167320573486 -2596737565229605070 FASTQ R1 (1) -2596737565229605070->517381928010527628 -2596737565229605070->-1618204866831484862 -9137514665139437996 FASTQ R2 (1) -9137514665139437996->517381928010527628 -724908847906719604 chip.call_peak 2114709632475869569 Peak (bfilt) -724908847906719604->2114709632475869569 -3607497784637154098 Peak -724908847906719604->-3607497784637154098 -3607497784637154098->-346376573317022343 -3607497784637154098->1022455062285789776 -3607497784637154098->-3709354270606758171 -3607497784637154098->6276769228090411890 8060309876202465182 chip.bam2ta 372401858277871000 TAG-ALIGN 8060309876202465182->372401858277871000 372401858277871000->8538862705113168294 372401858277871000->-724908847906719604 5524316799580215987 chip.macs2_signal_track 372401858277871000->5524316799580215987 372401858277871000->-6254527483659863929 372401858277871000->-3709354270606758171 372401858277871000->6276769228090411890 372401858277871000->7485123755792450217 6309644427901664120 chip.filter 6812093450075957026 SAMstats QC 6309644427901664120->6812093450075957026 -7625495932563128334 Filt/deduped BAM 6309644427901664120->-7625495932563128334 8462017714900739470 LibCmplx QC 6309644427901664120->8462017714900739470 -7625495932563128334->8060309876202465182 -7625495932563128334->1002663059188315451 -5735837214686770185 chip.align 4964443403492018286 SAMstats QC -5735837214686770185->4964443403492018286 -7110093860003292485 BAM -5735837214686770185->-7110093860003292485 -7110093860003292485->6309644427901664120 -7302769212083644622 chip.xcor -86132618367185353 XCOR Plot -7302769212083644622->-86132618367185353 -2924939868707718629 BW FC 5524316799580215987->-2924939868707718629 -6637604161482436872 BW p-val 5524316799580215987->-6637604161482436872 3596611780614008937 FASTQ R1 (1) 3596611780614008937->-5735837214686770185 3596611780614008937->-7302769212083644622 2132704477951980736 FASTQ R2 (1) 2132704477951980736->-5735837214686770185 8571001205346173375 chip.pool_ta_ctl -4354183132400000717 TAG-ALIGN 8571001205346173375->-4354183132400000717 -4354183132400000717->4120818154657414128 -4354183132400000717->950249983198782538 -4354183132400000717->-3358290443262735885 -4354183132400000717->8228895963180682122 -4354183132400000717->-724908847906719604 -4354183132400000717->5524316799580215987 -4354183132400000717->-6254527483659863929 -4354183132400000717->-3709354270606758171 -4354183132400000717->6276769228090411890 -4354183132400000717->7485123755792450217 5641871358384994929 chip.bam2ta_ctl 7290042892140099045 TAG-ALIGN 5641871358384994929->7290042892140099045 7290042892140099045->8571001205346173375 4002715235115098839 Filt/deduped BAM 4002715235115098839->5641871358384994929 4002715235115098839->1002663059188315451 859590469762749604 chip.bam2ta_ctl -8179359862751957181 TAG-ALIGN 859590469762749604->-8179359862751957181 -8179359862751957181->8571001205346173375 7885823141209885083 Filt/deduped BAM 7885823141209885083->859590469762749604 7885823141209885083->1002663059188315451 8419320487520531556 chip.bam2ta_ctl -4961639153745650823 TAG-ALIGN 8419320487520531556->-4961639153745650823 -4961639153745650823->8571001205346173375 -1248643604677126876 Filt/deduped BAM -1248643604677126876->8419320487520531556 -1248643604677126876->1002663059188315451 -4281085425960599377 chip.bam2ta_ctl 6172724119933383052 TAG-ALIGN -4281085425960599377->6172724119933383052 6172724119933383052->8571001205346173375 8659471075222612071 Filt/deduped BAM 8659471075222612071->-4281085425960599377 8659471075222612071->1002663059188315451 -2151455149364504200 chip.bam2ta_ctl -2503512572556914819 TAG-ALIGN -2151455149364504200->-2503512572556914819 -2503512572556914819->8571001205346173375 2794581968209980674 Filt/deduped BAM 2794581968209980674->-2151455149364504200 2794581968209980674->1002663059188315451 -7789460352986500045 chip.bam2ta_ctl -7997779034603687106 TAG-ALIGN -7789460352986500045->-7997779034603687106 -7997779034603687106->8571001205346173375 -7308730519419195725 Filt/deduped BAM -7308730519419195725->-7789460352986500045 -7308730519419195725->1002663059188315451 5170429836372236570 chip.bam2ta_ctl -5609146203496205771 TAG-ALIGN 5170429836372236570->-5609146203496205771 -5609146203496205771->8571001205346173375 4468691048446462626 Filt/deduped BAM 4468691048446462626->5170429836372236570 4468691048446462626->1002663059188315451 4835677512544121783 chip.bam2ta_ctl -7909170771357412318 TAG-ALIGN 4835677512544121783->-7909170771357412318 -7909170771357412318->8571001205346173375 -4506156640645447003 Filt/deduped BAM -4506156640645447003->4835677512544121783 -4506156640645447003->1002663059188315451 -7096365163753087714 chip.bam2ta_ctl -7330985353468224224 TAG-ALIGN -7096365163753087714->-7330985353468224224 -7330985353468224224->8571001205346173375 -8253151567867873269 Filt/deduped BAM -8253151567867873269->-7096365163753087714 -8253151567867873269->1002663059188315451 3853092913664788338 chip.bam2ta_ctl -7865064644634026505 TAG-ALIGN 3853092913664788338->-7865064644634026505 -7865064644634026505->8571001205346173375 7219217686233529045 Filt/deduped BAM 7219217686233529045->3853092913664788338 7219217686233529045->1002663059188315451 -2241541941706451549 chip.bam2ta_ctl -5705220638395629584 TAG-ALIGN -2241541941706451549->-5705220638395629584 -5705220638395629584->8571001205346173375 -2307082610353884184 Filt/deduped BAM -2307082610353884184->-2241541941706451549 -2307082610353884184->1002663059188315451 -2040618285207073804 chip.bam2ta_ctl -7511974987673629915 TAG-ALIGN -2040618285207073804->-7511974987673629915 -7511974987673629915->8571001205346173375 6630889274509973643 Filt/deduped BAM 6630889274509973643->-2040618285207073804 6630889274509973643->1002663059188315451 -7297368282726933516 chip.bam2ta_ctl 4925896476537050654 TAG-ALIGN -7297368282726933516->4925896476537050654 4925896476537050654->8571001205346173375 -9171298047556769465 Filt/deduped BAM -9171298047556769465->-7297368282726933516 -9171298047556769465->1002663059188315451 6237262587368252054 chip.bam2ta_ctl -3007011448768776783 TAG-ALIGN 6237262587368252054->-3007011448768776783 -3007011448768776783->8571001205346173375 -1299535299539868613 Filt/deduped BAM -1299535299539868613->6237262587368252054 -1299535299539868613->1002663059188315451 -5298526799421067551 chip.bam2ta_ctl -7299253357580415029 TAG-ALIGN -5298526799421067551->-7299253357580415029 -7299253357580415029->8571001205346173375 -6753462976350336381 Filt/deduped BAM -6753462976350336381->-5298526799421067551 -6753462976350336381->1002663059188315451 -1228743491170277877 chip.bam2ta_ctl 8425165649002394422 TAG-ALIGN -1228743491170277877->8425165649002394422 8425165649002394422->8571001205346173375 -1265684226163366395 Filt/deduped BAM -1265684226163366395->-1228743491170277877 -1265684226163366395->1002663059188315451 3081225500347558786 chip.bam2ta_ctl 6511677322512852670 TAG-ALIGN 3081225500347558786->6511677322512852670 6511677322512852670->8571001205346173375 5320372514417395705 Filt/deduped BAM 5320372514417395705->3081225500347558786 5320372514417395705->1002663059188315451 4554541088384526151 chip.bam2ta_ctl -1802952131178959158 TAG-ALIGN 4554541088384526151->-1802952131178959158 -1802952131178959158->8571001205346173375 -6683941477069128881 Filt/deduped BAM -6683941477069128881->4554541088384526151 -6683941477069128881->1002663059188315451 4713063713065110626 chip.bam2ta_ctl -1580187862097039685 TAG-ALIGN 4713063713065110626->-1580187862097039685 -1580187862097039685->8571001205346173375 -2411565099307249044 Filt/deduped BAM -2411565099307249044->4713063713065110626 -2411565099307249044->1002663059188315451 -2585353614307020393 chip.bam2ta_ctl -18561798939813671 TAG-ALIGN -2585353614307020393->-18561798939813671 -18561798939813671->8571001205346173375 -602722613524620520 Filt/deduped BAM -602722613524620520->-2585353614307020393 -602722613524620520->1002663059188315451 1802618159932038884 chip.bam2ta_ctl -5372359096327367391 TAG-ALIGN 1802618159932038884->-5372359096327367391 -5372359096327367391->8571001205346173375 9213600921421328386 Filt/deduped BAM 9213600921421328386->1802618159932038884 9213600921421328386->1002663059188315451 2509221712091839334 chip.bam2ta_ctl 8088686841856218282 TAG-ALIGN 2509221712091839334->8088686841856218282 8088686841856218282->8571001205346173375 3991438612618470526 Filt/deduped BAM 3991438612618470526->2509221712091839334 3991438612618470526->1002663059188315451 5692065035849841281 chip.bam2ta_ctl -4296690320366993427 TAG-ALIGN 5692065035849841281->-4296690320366993427 -4296690320366993427->8571001205346173375 -6832903082591303131 Filt/deduped BAM -6832903082591303131->5692065035849841281 -6832903082591303131->1002663059188315451 5904115910693545543 chip.bam2ta_ctl 442280351030340183 TAG-ALIGN 5904115910693545543->442280351030340183 442280351030340183->8571001205346173375 -2529788038106608450 Filt/deduped BAM -2529788038106608450->5904115910693545543 -2529788038106608450->1002663059188315451 7137975337689243460 IDR Plot ppr -6254527483659863929->7137975337689243460 7474824450524544181 IDR Peak ppr -6254527483659863929->7474824450524544181 7474824450524544181->6276769228090411890 55762681291982260 IDR Plot rep1_vs_rep2 -346376573317022343->55762681291982260 4980980275708005419 IDR NPeak rep1_vs_rep2 -346376573317022343->4980980275708005419 4980980275708005419->6276769228090411890 -5520327449430456202 Overlap Peak rep1_vs_rep2 1022455062285789776->-5520327449430456202 -5520327449430456202->-3709354270606758171 -1173993006708638847 Overlap Peak optimal -3709354270606758171->-1173993006708638847 -956272655791774135 Overlap reproducibility -3709354270606758171->-956272655791774135 8247295605802148302 IDR Peak optimal 6276769228090411890->8247295605802148302 380989259787881352 IDR reproducibility 6276769228090411890->380989259787881352 -4515241815161319029 Overlap Peak ppr 7485123755792450217->-4515241815161319029 -4515241815161319029->-3709354270606758171 5348187524864920363 JSD Plot 1002663059188315451->5348187524864920363

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