File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF240PRL.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF240PRL.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF240PRL.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF240PRL.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF240PRL.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF573IJP.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF573IJP.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF573IJP.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF573IJP.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF573IJP.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF240PRL.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF240PRL.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF240PRL.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF240PRL.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF240PRL.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF240PRL.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF240PRL.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF240PRL.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF573IJP.crop_101-2bp.nodup.pr1_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF573IJP.crop_101-2bp.nodup.pr1_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF573IJP.crop_101-2bp.nodup.pr1_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF573IJP.crop_101-2bp.nodup.pr1_x_ctl.pooled.266M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF573IJP.crop_101-2bp.nodup.pr2_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF573IJP.crop_101-2bp.nodup.pr2_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF573IJP.crop_101-2bp.nodup.pr2_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF573IJP.crop_101-2bp.nodup.pr2_x_ctl.pooled.266M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.528M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF240PRL.crop_101-2bp.nodup.pr1_x_ctl.pooled.262M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF240PRL.crop_101-2bp.nodup.pr2_x_ctl.pooled.262M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF240PRL.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF240PRL.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF240PRL.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF240PRL.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF240PRL.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF240PRL.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF573IJP.crop_101-2bp.nodup.pr1_x_ctl.pooled.266M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF573IJP.crop_101-2bp.nodup.pr2_x_ctl.pooled.266M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF573IJP.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF573IJP.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF573IJP.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF573IJP.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF573IJP.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF573IJP.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/bebdb43c-b6f5-4953-87ba-06b57d6fb03d/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF240PRL.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/b5a3136c-146c-4ea2-a6c2-96f84c0a0b69/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.528M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.528M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF240PRL.crop_101-2bp.nodup_x_ctl.pooled.262M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/4cb109e4-0087-4c7c-803c-a7171698269d/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF573IJP.crop_101-2bp.nodup_x_ctl.pooled.266M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -8051567785166111074 chip.macs2_signal_track_pooled -3120588605550997294 BW FC -8051567785166111074->-3120588605550997294 -7021359081406288877 BW p-val -8051567785166111074->-7021359081406288877 6567746537988367181 chip.call_peak_pooled -228326717788279545 Peak (bfilt) 6567746537988367181->-228326717788279545 2520501678768846325 Peak 6567746537988367181->2520501678768846325 -5020825383207054139 chip.idr_ppr 2520501678768846325->-5020825383207054139 -2332004355814671002 chip.idr 2520501678768846325->-2332004355814671002 4439237701518034799 chip.overlap 2520501678768846325->4439237701518034799 6600379183268718988 chip.overlap_ppr 2520501678768846325->6600379183268718988 4641743757636271847 chip.pool_ta 521127032969172117 TAG-ALIGN 4641743757636271847->521127032969172117 521127032969172117->-8051567785166111074 521127032969172117->6567746537988367181 521127032969172117->-5020825383207054139 521127032969172117->-2332004355814671002 521127032969172117->4439237701518034799 521127032969172117->6600379183268718988 -253978605741181994 chip.call_peak 8336465861326088837 Peak (bfilt) -253978605741181994->8336465861326088837 8156383082889787656 Peak -253978605741181994->8156383082889787656 8156383082889787656->-2332004355814671002 8156383082889787656->4439237701518034799 8818240107310169940 chip.reproducibility_overlap 8156383082889787656->8818240107310169940 -7241999723935546309 chip.reproducibility_idr 8156383082889787656->-7241999723935546309 5646243872525219166 chip.bam2ta 3478298958519367704 TAG-ALIGN 5646243872525219166->3478298958519367704 3478298958519367704->4641743757636271847 3478298958519367704->-253978605741181994 629035464375907876 chip.macs2_signal_track 3478298958519367704->629035464375907876 3478298958519367704->-5020825383207054139 3478298958519367704->8818240107310169940 3478298958519367704->-7241999723935546309 3478298958519367704->6600379183268718988 7718556753922244734 chip.filter -3100946602139816036 SAMstats QC 7718556753922244734->-3100946602139816036 -3350579745646904141 Filt/deduped BAM 7718556753922244734->-3350579745646904141 -2706206539682149766 LibCmplx QC 7718556753922244734->-2706206539682149766 -3350579745646904141->5646243872525219166 -1030376134827937057 chip.jsd -3350579745646904141->-1030376134827937057 -2008892304865202212 chip.align 6674818280467643423 SAMstats QC -2008892304865202212->6674818280467643423 -1979790349893610030 BAM -2008892304865202212->-1979790349893610030 -1979790349893610030->7718556753922244734 -8910618765820713102 chip.xcor 4048927856700850810 XCOR Plot -8910618765820713102->4048927856700850810 -2421603699296604619 BW FC 629035464375907876->-2421603699296604619 7024074353941881591 BW p-val 629035464375907876->7024074353941881591 3660656589718309536 FASTQ R1 (1) 3660656589718309536->-2008892304865202212 3660656589718309536->-8910618765820713102 2732907315052637728 FASTQ R2 (1) 2732907315052637728->-2008892304865202212 2422734427800114743 chip.call_peak 7730724334307262997 Peak (bfilt) 2422734427800114743->7730724334307262997 9104612615715093608 Peak 2422734427800114743->9104612615715093608 9104612615715093608->-2332004355814671002 9104612615715093608->4439237701518034799 9104612615715093608->8818240107310169940 9104612615715093608->-7241999723935546309 4256625487730783176 chip.bam2ta -4675875374363968371 TAG-ALIGN 4256625487730783176->-4675875374363968371 -4675875374363968371->4641743757636271847 -4675875374363968371->2422734427800114743 3337695810125973204 chip.macs2_signal_track -4675875374363968371->3337695810125973204 -4675875374363968371->-5020825383207054139 -4675875374363968371->8818240107310169940 -4675875374363968371->-7241999723935546309 -4675875374363968371->6600379183268718988 -7615820133927877409 chip.filter -7541094951990337406 SAMstats QC -7615820133927877409->-7541094951990337406 -6956463039117605775 Filt/deduped BAM -7615820133927877409->-6956463039117605775 -8807759041838639466 LibCmplx QC -7615820133927877409->-8807759041838639466 -6956463039117605775->4256625487730783176 -6956463039117605775->-1030376134827937057 8832010702400225277 chip.align 2008457786013098938 SAMstats QC 8832010702400225277->2008457786013098938 -5219359366160744823 BAM 8832010702400225277->-5219359366160744823 -5219359366160744823->-7615820133927877409 2264873271247288765 chip.xcor 9167013769418456667 XCOR Plot 2264873271247288765->9167013769418456667 -3620967607448773477 BW FC 3337695810125973204->-3620967607448773477 -1158932720856345381 BW p-val 3337695810125973204->-1158932720856345381 1948774234544087932 FASTQ R1 (1) 1948774234544087932->8832010702400225277 1948774234544087932->2264873271247288765 9082833987545672968 FASTQ R2 (1) 9082833987545672968->8832010702400225277 683754602924885407 chip.pool_ta_ctl 2381666386157107456 TAG-ALIGN 683754602924885407->2381666386157107456 2381666386157107456->-8051567785166111074 2381666386157107456->6567746537988367181 2381666386157107456->-253978605741181994 2381666386157107456->629035464375907876 2381666386157107456->2422734427800114743 2381666386157107456->3337695810125973204 2381666386157107456->-5020825383207054139 2381666386157107456->8818240107310169940 2381666386157107456->-7241999723935546309 2381666386157107456->6600379183268718988 638459206147425694 chip.bam2ta_ctl 2714322928085007692 TAG-ALIGN 638459206147425694->2714322928085007692 2714322928085007692->683754602924885407 -4519635601615674386 Filt/deduped BAM -4519635601615674386->638459206147425694 -4519635601615674386->-1030376134827937057 -1161931521089304224 chip.bam2ta_ctl 6725098118331932317 TAG-ALIGN -1161931521089304224->6725098118331932317 6725098118331932317->683754602924885407 -2322325094651310048 Filt/deduped BAM -2322325094651310048->-1161931521089304224 -2322325094651310048->-1030376134827937057 -4815400958198124124 chip.bam2ta_ctl 1097653795122650448 TAG-ALIGN -4815400958198124124->1097653795122650448 1097653795122650448->683754602924885407 -8326520925265559938 Filt/deduped BAM -8326520925265559938->-4815400958198124124 -8326520925265559938->-1030376134827937057 -2321675548683397833 chip.bam2ta_ctl 5458868729300684227 TAG-ALIGN -2321675548683397833->5458868729300684227 5458868729300684227->683754602924885407 5875472343738070179 Filt/deduped BAM 5875472343738070179->-2321675548683397833 5875472343738070179->-1030376134827937057 8019086789858654064 chip.bam2ta_ctl 3012912857682759216 TAG-ALIGN 8019086789858654064->3012912857682759216 3012912857682759216->683754602924885407 2101197650821359472 Filt/deduped BAM 2101197650821359472->8019086789858654064 2101197650821359472->-1030376134827937057 -7325307547169463040 chip.bam2ta_ctl 8396828286007759115 TAG-ALIGN -7325307547169463040->8396828286007759115 8396828286007759115->683754602924885407 -2430248800662992662 Filt/deduped BAM -2430248800662992662->-7325307547169463040 -2430248800662992662->-1030376134827937057 -6066829765296959852 chip.bam2ta_ctl 4378430745232604806 TAG-ALIGN -6066829765296959852->4378430745232604806 4378430745232604806->683754602924885407 -7352630725051526564 Filt/deduped BAM -7352630725051526564->-6066829765296959852 -7352630725051526564->-1030376134827937057 281801910087795086 chip.bam2ta_ctl -2351819174792146984 TAG-ALIGN 281801910087795086->-2351819174792146984 -2351819174792146984->683754602924885407 3101369151380146623 Filt/deduped BAM 3101369151380146623->281801910087795086 3101369151380146623->-1030376134827937057 9083239600205766922 chip.bam2ta_ctl 413147853977700741 TAG-ALIGN 9083239600205766922->413147853977700741 413147853977700741->683754602924885407 -505705711240981715 Filt/deduped BAM -505705711240981715->9083239600205766922 -505705711240981715->-1030376134827937057 -2597803608337524360 chip.bam2ta_ctl 8977726330247671189 TAG-ALIGN -2597803608337524360->8977726330247671189 8977726330247671189->683754602924885407 -1984167387704323208 Filt/deduped BAM -1984167387704323208->-2597803608337524360 -1984167387704323208->-1030376134827937057 1554230083231192529 chip.bam2ta_ctl 6695943888647969198 TAG-ALIGN 1554230083231192529->6695943888647969198 6695943888647969198->683754602924885407 3000233045511531425 Filt/deduped BAM 3000233045511531425->1554230083231192529 3000233045511531425->-1030376134827937057 6267691289017093735 chip.bam2ta_ctl -6321822659842093954 TAG-ALIGN 6267691289017093735->-6321822659842093954 -6321822659842093954->683754602924885407 -3520649666668472408 Filt/deduped BAM -3520649666668472408->6267691289017093735 -3520649666668472408->-1030376134827937057 -1579110171482002964 chip.bam2ta_ctl 1554389122834317705 TAG-ALIGN -1579110171482002964->1554389122834317705 1554389122834317705->683754602924885407 6958933352261780575 Filt/deduped BAM 6958933352261780575->-1579110171482002964 6958933352261780575->-1030376134827937057 -8721596466498984668 chip.bam2ta_ctl 9205494309320110171 TAG-ALIGN -8721596466498984668->9205494309320110171 9205494309320110171->683754602924885407 -8604267617100727642 Filt/deduped BAM -8604267617100727642->-8721596466498984668 -8604267617100727642->-1030376134827937057 5071644069293555479 chip.bam2ta_ctl 2785006741756560216 TAG-ALIGN 5071644069293555479->2785006741756560216 2785006741756560216->683754602924885407 -8016403964534784471 Filt/deduped BAM -8016403964534784471->5071644069293555479 -8016403964534784471->-1030376134827937057 -1643996538480365419 chip.bam2ta_ctl -7592138267463265408 TAG-ALIGN -1643996538480365419->-7592138267463265408 -7592138267463265408->683754602924885407 1094818041443777532 Filt/deduped BAM 1094818041443777532->-1643996538480365419 1094818041443777532->-1030376134827937057 7878022639889852882 chip.bam2ta_ctl -3047816270932676942 TAG-ALIGN 7878022639889852882->-3047816270932676942 -3047816270932676942->683754602924885407 -144765570708354820 Filt/deduped BAM -144765570708354820->7878022639889852882 -144765570708354820->-1030376134827937057 -5429120540906943020 chip.bam2ta_ctl -7882530314034884319 TAG-ALIGN -5429120540906943020->-7882530314034884319 -7882530314034884319->683754602924885407 -4988078726734478488 Filt/deduped BAM -4988078726734478488->-5429120540906943020 -4988078726734478488->-1030376134827937057 -5230418360143765780 chip.bam2ta_ctl -1629397630290004830 TAG-ALIGN -5230418360143765780->-1629397630290004830 -1629397630290004830->683754602924885407 -6243216091507508916 Filt/deduped BAM -6243216091507508916->-5230418360143765780 -6243216091507508916->-1030376134827937057 -1305574739787673257 chip.bam2ta_ctl -4050192366873257037 TAG-ALIGN -1305574739787673257->-4050192366873257037 -4050192366873257037->683754602924885407 -1545815893738416413 Filt/deduped BAM -1545815893738416413->-1305574739787673257 -1545815893738416413->-1030376134827937057 -8177816679401123404 chip.bam2ta_ctl 969028573123965676 TAG-ALIGN -8177816679401123404->969028573123965676 969028573123965676->683754602924885407 -625695622498156480 Filt/deduped BAM -625695622498156480->-8177816679401123404 -625695622498156480->-1030376134827937057 7604361289370674389 chip.bam2ta_ctl -711024472430054637 TAG-ALIGN 7604361289370674389->-711024472430054637 -711024472430054637->683754602924885407 -5192401073313940945 Filt/deduped BAM -5192401073313940945->7604361289370674389 -5192401073313940945->-1030376134827937057 -4119624084681768957 chip.bam2ta_ctl 4941831588407708521 TAG-ALIGN -4119624084681768957->4941831588407708521 4941831588407708521->683754602924885407 -7649754156253566886 Filt/deduped BAM -7649754156253566886->-4119624084681768957 -7649754156253566886->-1030376134827937057 4425493391149844036 chip.bam2ta_ctl 6652938997916454691 TAG-ALIGN 4425493391149844036->6652938997916454691 6652938997916454691->683754602924885407 9170552358824041648 Filt/deduped BAM 9170552358824041648->4425493391149844036 9170552358824041648->-1030376134827937057 7113712948699357259 IDR Plot ppr -5020825383207054139->7113712948699357259 -842764772229196517 IDR Peak ppr -5020825383207054139->-842764772229196517 -842764772229196517->-7241999723935546309 -7523892114703322858 IDR Plot rep1_vs_rep2 -2332004355814671002->-7523892114703322858 -9043615233885585318 IDR NPeak rep1_vs_rep2 -2332004355814671002->-9043615233885585318 -9043615233885585318->-7241999723935546309 7187040160378165169 Overlap Peak rep1_vs_rep2 4439237701518034799->7187040160378165169 7187040160378165169->8818240107310169940 -8401488847160243122 Overlap Peak optimal 8818240107310169940->-8401488847160243122 -3418882050634503315 Overlap reproducibility 8818240107310169940->-3418882050634503315 326378360133335835 IDR Peak optimal -7241999723935546309->326378360133335835 -2227459847482707889 IDR reproducibility -7241999723935546309->-2227459847482707889 -7247548506552877764 Overlap Peak ppr 6600379183268718988->-7247548506552877764 -7247548506552877764->8818240107310169940 3884909803481215105 JSD Plot -1030376134827937057->3884909803481215105

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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