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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF631JSV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF631JSV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF631JSV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF631JSV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF631JSV.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF002OWA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF002OWA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF002OWA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF002OWA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF002OWA.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.692M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.692M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.692M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.692M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.692M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.692M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.692M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF631JSV.crop_101-2bp.nodup.pr1_x_ctl.pooled.351M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF631JSV.crop_101-2bp.nodup.pr2_x_ctl.pooled.351M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF631JSV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF631JSV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF631JSV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF631JSV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF631JSV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF631JSV.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF002OWA.crop_101-2bp.nodup.pr1_x_ctl.pooled.340M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF002OWA.crop_101-2bp.nodup.pr2_x_ctl.pooled.340M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF002OWA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF002OWA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF002OWA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF002OWA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF002OWA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/6d97bf44-61fb-429d-b9c7-e6bb9283a356/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF002OWA.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF631JSV.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.692M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.692M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF631JSV.crop_101-2bp.nodup_x_ctl.pooled.351M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/8fe5e5fd-7df8-4124-8b88-37b981dda4ce/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF002OWA.crop_101-2bp.nodup_x_ctl.pooled.340M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 65375310134101912 chip.macs2_signal_track_pooled 4427649984606939780 BW FC 65375310134101912->4427649984606939780 -7204046342269571277 BW p-val 65375310134101912->-7204046342269571277 7408194194346356103 chip.call_peak_pooled 1804094152261710022 Peak (bfilt) 7408194194346356103->1804094152261710022 7369440578895860653 Peak 7408194194346356103->7369440578895860653 -8093517845408670333 chip.idr_ppr 7369440578895860653->-8093517845408670333 -122918971766867134 chip.idr 7369440578895860653->-122918971766867134 6101533316389839272 chip.overlap 7369440578895860653->6101533316389839272 7579949397024444309 chip.overlap_ppr 7369440578895860653->7579949397024444309 8972933859733689907 chip.pool_ta 2912767203924662592 TAG-ALIGN 8972933859733689907->2912767203924662592 2912767203924662592->65375310134101912 2912767203924662592->7408194194346356103 2912767203924662592->-8093517845408670333 2912767203924662592->-122918971766867134 2912767203924662592->6101533316389839272 2912767203924662592->7579949397024444309 -1245960803926085403 chip.call_peak 4888540370955405773 Peak (bfilt) -1245960803926085403->4888540370955405773 4280121981307935575 Peak -1245960803926085403->4280121981307935575 4280121981307935575->-122918971766867134 4280121981307935575->6101533316389839272 -178008487396985298 chip.reproducibility_overlap 4280121981307935575->-178008487396985298 -680978870467539736 chip.reproducibility_idr 4280121981307935575->-680978870467539736 3368025084911372444 chip.bam2ta -9039641794755261220 TAG-ALIGN 3368025084911372444->-9039641794755261220 -9039641794755261220->8972933859733689907 -9039641794755261220->-1245960803926085403 -2199084184560216792 chip.macs2_signal_track -9039641794755261220->-2199084184560216792 -9039641794755261220->-8093517845408670333 -9039641794755261220->-178008487396985298 -9039641794755261220->-680978870467539736 -9039641794755261220->7579949397024444309 6687722971007798666 chip.filter -7434336193211390960 SAMstats QC 6687722971007798666->-7434336193211390960 4097461400572980711 Filt/deduped BAM 6687722971007798666->4097461400572980711 -1373281229543328136 LibCmplx QC 6687722971007798666->-1373281229543328136 4097461400572980711->3368025084911372444 1619780992668630101 chip.jsd 4097461400572980711->1619780992668630101 -709734727390088923 chip.jsd 4097461400572980711->-709734727390088923 6893186598112380405 chip.align -8585453311940199058 SAMstats QC 6893186598112380405->-8585453311940199058 -6574079977359447090 BAM 6893186598112380405->-6574079977359447090 -6574079977359447090->6687722971007798666 1608624741014216163 chip.xcor -4102161346488307582 XCOR Plot 1608624741014216163->-4102161346488307582 -2674925797621413622 BW FC -2199084184560216792->-2674925797621413622 -4340571405455460950 BW p-val -2199084184560216792->-4340571405455460950 -4914069256639353865 FASTQ R1 (1) -4914069256639353865->6893186598112380405 -4914069256639353865->1608624741014216163 -3502932480795653648 FASTQ R2 (1) -3502932480795653648->6893186598112380405 -1641402050831859349 chip.call_peak 7411138772073383400 Peak (bfilt) -1641402050831859349->7411138772073383400 -7902304311746421055 Peak -1641402050831859349->-7902304311746421055 -7902304311746421055->-122918971766867134 -7902304311746421055->6101533316389839272 -7902304311746421055->-178008487396985298 -7902304311746421055->-680978870467539736 3832305652096374648 chip.bam2ta -6691227354056865458 TAG-ALIGN 3832305652096374648->-6691227354056865458 -6691227354056865458->8972933859733689907 -6691227354056865458->-1641402050831859349 -4945019877582799235 chip.macs2_signal_track -6691227354056865458->-4945019877582799235 -6691227354056865458->-8093517845408670333 -6691227354056865458->-178008487396985298 -6691227354056865458->-680978870467539736 -6691227354056865458->7579949397024444309 5205736767188892615 chip.filter -5300634575396815809 SAMstats QC 5205736767188892615->-5300634575396815809 6647415998856315134 Filt/deduped BAM 5205736767188892615->6647415998856315134 7608727734262459937 LibCmplx QC 5205736767188892615->7608727734262459937 6647415998856315134->3832305652096374648 6647415998856315134->1619780992668630101 6647415998856315134->-709734727390088923 -3772860174127352689 chip.align -9187681673786433109 SAMstats QC -3772860174127352689->-9187681673786433109 -1718177856242736498 BAM -3772860174127352689->-1718177856242736498 -1718177856242736498->5205736767188892615 -4205314586972668683 chip.xcor -2570485746435739425 XCOR Plot -4205314586972668683->-2570485746435739425 -2883432064183248588 BW FC -4945019877582799235->-2883432064183248588 8614886584053227314 BW p-val -4945019877582799235->8614886584053227314 -4820444936609017355 FASTQ R1 (1) -4820444936609017355->-3772860174127352689 -4820444936609017355->-4205314586972668683 -1575982122454065862 FASTQ R2 (1) -1575982122454065862->-3772860174127352689 -1617292167909368951 chip.pool_ta_ctl -734270449857319094 TAG-ALIGN -1617292167909368951->-734270449857319094 -734270449857319094->65375310134101912 -734270449857319094->7408194194346356103 -734270449857319094->-1245960803926085403 -734270449857319094->-2199084184560216792 -734270449857319094->-1641402050831859349 -734270449857319094->-4945019877582799235 -734270449857319094->-8093517845408670333 -734270449857319094->-178008487396985298 -734270449857319094->-680978870467539736 -734270449857319094->7579949397024444309 -1485351642773088070 chip.bam2ta_ctl 1785015072324954310 TAG-ALIGN -1485351642773088070->1785015072324954310 1785015072324954310->-1617292167909368951 -4066952824068272568 Filt/deduped BAM -4066952824068272568->-1485351642773088070 -4066952824068272568->1619780992668630101 -4066952824068272568->-709734727390088923 -7049319780186064297 chip.bam2ta_ctl -1106728100408149625 TAG-ALIGN -7049319780186064297->-1106728100408149625 -1106728100408149625->-1617292167909368951 -3154719457940806535 Filt/deduped BAM -3154719457940806535->-7049319780186064297 -3154719457940806535->1619780992668630101 -3154719457940806535->-709734727390088923 1181854263180367262 chip.bam2ta_ctl -2449449893101232952 TAG-ALIGN 1181854263180367262->-2449449893101232952 -2449449893101232952->-1617292167909368951 624018962193620228 Filt/deduped BAM 624018962193620228->1181854263180367262 624018962193620228->1619780992668630101 624018962193620228->-709734727390088923 -5489689603749820809 chip.bam2ta_ctl -16263573118339500 TAG-ALIGN -5489689603749820809->-16263573118339500 -16263573118339500->-1617292167909368951 5425404969369960534 Filt/deduped BAM 5425404969369960534->-5489689603749820809 5425404969369960534->1619780992668630101 5425404969369960534->-709734727390088923 -5309343002890570767 chip.bam2ta_ctl -5987794572745888997 TAG-ALIGN -5309343002890570767->-5987794572745888997 -5987794572745888997->-1617292167909368951 -5062277609680228960 Filt/deduped BAM -5062277609680228960->-5309343002890570767 -5062277609680228960->1619780992668630101 -5062277609680228960->-709734727390088923 -5195235457971162646 chip.bam2ta_ctl 8597691946341972590 TAG-ALIGN -5195235457971162646->8597691946341972590 8597691946341972590->-1617292167909368951 -1254283719487709465 Filt/deduped BAM -1254283719487709465->-5195235457971162646 -1254283719487709465->1619780992668630101 -1254283719487709465->-709734727390088923 6920078882653723403 chip.bam2ta_ctl -7561675349632138365 TAG-ALIGN 6920078882653723403->-7561675349632138365 -7561675349632138365->-1617292167909368951 -4885946673743727176 Filt/deduped BAM -4885946673743727176->6920078882653723403 -4885946673743727176->1619780992668630101 -4885946673743727176->-709734727390088923 9132383558598846460 chip.bam2ta_ctl 255456382725034290 TAG-ALIGN 9132383558598846460->255456382725034290 255456382725034290->-1617292167909368951 -2741653833010573845 Filt/deduped BAM -2741653833010573845->9132383558598846460 -2741653833010573845->1619780992668630101 -2741653833010573845->-709734727390088923 5123147756298007630 chip.bam2ta_ctl 4804523086959492410 TAG-ALIGN 5123147756298007630->4804523086959492410 4804523086959492410->-1617292167909368951 -8959475580818328328 Filt/deduped BAM -8959475580818328328->5123147756298007630 -8959475580818328328->1619780992668630101 -8959475580818328328->-709734727390088923 3836986449458752464 chip.bam2ta_ctl -856411443214679919 TAG-ALIGN 3836986449458752464->-856411443214679919 -856411443214679919->-1617292167909368951 -5857959826166504800 Filt/deduped BAM -5857959826166504800->3836986449458752464 -5857959826166504800->1619780992668630101 -5857959826166504800->-709734727390088923 2258872251900424937 chip.bam2ta_ctl 1019273356185463245 TAG-ALIGN 2258872251900424937->1019273356185463245 1019273356185463245->-1617292167909368951 4647851533762531076 Filt/deduped BAM 4647851533762531076->2258872251900424937 4647851533762531076->1619780992668630101 4647851533762531076->-709734727390088923 7002633443103170568 chip.bam2ta_ctl -7037651532414320159 TAG-ALIGN 7002633443103170568->-7037651532414320159 -7037651532414320159->-1617292167909368951 3052002321844899654 Filt/deduped BAM 3052002321844899654->7002633443103170568 3052002321844899654->1619780992668630101 3052002321844899654->-709734727390088923 9163613758576590759 chip.bam2ta_ctl 9024188448312027662 TAG-ALIGN 9163613758576590759->9024188448312027662 9024188448312027662->-1617292167909368951 -6744489488948296823 Filt/deduped BAM -6744489488948296823->9163613758576590759 -6744489488948296823->1619780992668630101 -6744489488948296823->-709734727390088923 -642292514472763273 chip.bam2ta_ctl -4826974615163157223 TAG-ALIGN -642292514472763273->-4826974615163157223 -4826974615163157223->-1617292167909368951 7584887273993825567 Filt/deduped BAM 7584887273993825567->-642292514472763273 7584887273993825567->1619780992668630101 7584887273993825567->-709734727390088923 -5205560550854704983 chip.bam2ta_ctl -5952783780729461401 TAG-ALIGN -5205560550854704983->-5952783780729461401 -5952783780729461401->-1617292167909368951 20636869986714554 Filt/deduped BAM 20636869986714554->-5205560550854704983 20636869986714554->1619780992668630101 20636869986714554->-709734727390088923 -6256421807069593599 chip.bam2ta_ctl 2812212019806194692 TAG-ALIGN -6256421807069593599->2812212019806194692 2812212019806194692->-1617292167909368951 -4764837283701405440 Filt/deduped BAM -4764837283701405440->-6256421807069593599 -4764837283701405440->1619780992668630101 -4764837283701405440->-709734727390088923 -4385340581085933939 chip.bam2ta_ctl 1723447431047599959 TAG-ALIGN -4385340581085933939->1723447431047599959 1723447431047599959->-1617292167909368951 -6308694858274773868 Filt/deduped BAM -6308694858274773868->-4385340581085933939 -6308694858274773868->1619780992668630101 -6308694858274773868->-709734727390088923 -5440490673535439949 chip.bam2ta_ctl 7721705205011619474 TAG-ALIGN -5440490673535439949->7721705205011619474 7721705205011619474->-1617292167909368951 7308301696197494090 Filt/deduped BAM 7308301696197494090->-5440490673535439949 7308301696197494090->1619780992668630101 7308301696197494090->-709734727390088923 -4536365675691302746 chip.bam2ta_ctl 4396480033589071539 TAG-ALIGN -4536365675691302746->4396480033589071539 4396480033589071539->-1617292167909368951 7387393429687250817 Filt/deduped BAM 7387393429687250817->-4536365675691302746 7387393429687250817->1619780992668630101 7387393429687250817->-709734727390088923 -1353234810886281900 chip.bam2ta_ctl 1298004376014170599 TAG-ALIGN -1353234810886281900->1298004376014170599 1298004376014170599->-1617292167909368951 821135121452494516 Filt/deduped BAM 821135121452494516->-1353234810886281900 821135121452494516->1619780992668630101 821135121452494516->-709734727390088923 8872739163855678904 chip.bam2ta_ctl -6199455388365447357 TAG-ALIGN 8872739163855678904->-6199455388365447357 -6199455388365447357->-1617292167909368951 7146777138182482429 Filt/deduped BAM 7146777138182482429->8872739163855678904 7146777138182482429->1619780992668630101 7146777138182482429->-709734727390088923 -6860409977951101869 chip.bam2ta_ctl -7990500877074790503 TAG-ALIGN -6860409977951101869->-7990500877074790503 -7990500877074790503->-1617292167909368951 3860612340674203611 Filt/deduped BAM 3860612340674203611->-6860409977951101869 3860612340674203611->1619780992668630101 3860612340674203611->-709734727390088923 8923665938110057129 chip.bam2ta_ctl 7859263211699101308 TAG-ALIGN 8923665938110057129->7859263211699101308 7859263211699101308->-1617292167909368951 -8386952833298256189 Filt/deduped BAM -8386952833298256189->8923665938110057129 -8386952833298256189->1619780992668630101 -8386952833298256189->-709734727390088923 6501320845226678673 chip.bam2ta_ctl 2289544900875349575 TAG-ALIGN 6501320845226678673->2289544900875349575 2289544900875349575->-1617292167909368951 -619915579177741295 Filt/deduped BAM -619915579177741295->6501320845226678673 -619915579177741295->1619780992668630101 -619915579177741295->-709734727390088923 -8792061862082319443 IDR Plot ppr -8093517845408670333->-8792061862082319443 7979747925852718023 IDR Peak ppr -8093517845408670333->7979747925852718023 7979747925852718023->-680978870467539736 -7113465139253257028 IDR Plot rep1_vs_rep2 -122918971766867134->-7113465139253257028 -3561052597223319216 IDR NPeak rep1_vs_rep2 -122918971766867134->-3561052597223319216 -3561052597223319216->-680978870467539736 -1465268906842623407 Overlap Peak rep1_vs_rep2 6101533316389839272->-1465268906842623407 -1465268906842623407->-178008487396985298 -4493290765704383923 Overlap Peak optimal -178008487396985298->-4493290765704383923 5635147723641999748 Overlap reproducibility -178008487396985298->5635147723641999748 -2170815490521537876 IDR Peak optimal -680978870467539736->-2170815490521537876 7448030479697956356 IDR reproducibility -680978870467539736->7448030479697956356 -1603489874576728705 Overlap Peak ppr 7579949397024444309->-1603489874576728705 -1603489874576728705->-178008487396985298 -8969163343474992229 JSD Plot 1619780992668630101->-8969163343474992229 -709734727390088923->-8969163343474992229

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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